Wall clock time and date at job start Fri Apr 10 2020 14:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86800 * 120.00143 * 2 1 4 4 H 1.48501 * 109.46848 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47367 * 300.00558 * 3 2 1 6 6 H 1.48506 * 109.46816 * 60.00392 * 3 2 1 7 7 C 1.39910 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99948 * 175.40055 * 7 2 1 9 9 C 1.41130 * 120.00209 * 355.38878 * 7 2 1 10 10 C 1.40888 * 120.16368 * 214.84918 * 9 7 2 11 11 C 1.36361 * 119.83016 * 180.02562 * 10 9 7 12 12 C 1.39511 * 120.16579 * 0.02562 * 11 10 9 13 13 N 1.39129 * 119.83174 * 179.97438 * 12 11 10 14 14 C 1.34771 * 120.00550 * 35.22265 * 13 12 11 15 15 O 1.21558 * 119.99688 * 355.37465 * 14 13 12 16 16 C 1.47795 * 120.00052 * 175.63755 * 14 13 12 17 17 C 1.39621 * 120.14184 * 359.73937 * 16 14 13 18 18 C 1.37932 * 119.87631 * 179.74095 * 17 16 14 19 19 C 1.38363 * 120.16481 * 0.50019 * 18 17 16 20 20 C 1.38457 * 120.28228 * 359.76878 * 19 18 17 21 21 Cl 1.73602 * 119.94052 * 179.97438 * 20 19 18 22 22 C 1.38092 * 120.12050 * 359.97438 * 20 19 18 23 23 C 1.39515 * 120.33221 * 0.22878 * 12 11 10 24 24 C 1.36362 * 120.16038 * 359.48729 * 23 12 11 25 25 H 0.96998 * 119.99559 * 359.97438 * 1 2 3 26 26 H 1.07991 * 120.08114 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.91859 * 179.97438 * 11 10 9 28 28 H 0.97011 * 119.99197 * 215.22779 * 13 12 11 29 29 H 1.08004 * 120.06070 * 359.96244 * 17 16 14 30 30 H 1.08005 * 119.92024 * 180.22382 * 18 17 16 31 31 H 1.07999 * 119.86086 * 179.74665 * 19 18 17 32 32 H 1.07998 * 120.08217 * 180.02562 * 22 20 19 33 33 H 1.07995 * 119.91676 * 179.72475 * 23 12 11 34 34 H 1.08000 * 120.08212 * 180.22722 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8840 2.3965 -1.2124 6 1 1.8841 2.3964 1.2126 7 6 2.0082 -1.2117 -0.0005 8 1 3.0856 -1.2133 -0.0755 9 6 1.3060 -2.4320 0.0972 10 6 1.8665 -3.5170 0.7996 11 6 1.1822 -4.6931 0.8893 12 6 -0.0695 -4.8236 0.2873 13 7 -0.7614 -6.0269 0.3827 14 6 -0.6768 -6.7656 1.5067 15 8 0.0688 -6.4240 2.4039 16 6 -1.4864 -7.9942 1.6462 17 6 -2.3438 -8.3894 0.6176 18 6 -3.0929 -9.5399 0.7513 19 6 -3.0042 -10.2970 1.9061 20 6 -2.1603 -9.9083 2.9326 21 17 -2.0564 -10.8645 4.3779 22 6 -1.4011 -8.7615 2.8090 23 6 -0.6287 -3.7553 -0.4145 24 6 0.0413 -2.5712 -0.5077 25 1 -0.4849 0.8401 0.0004 26 1 2.8355 -3.4175 1.2657 27 1 1.6107 -5.5260 1.4270 28 1 -1.3046 -6.3342 -0.3600 29 1 -2.4177 -7.7973 -0.2826 30 1 -3.7536 -9.8482 -0.0454 31 1 -3.5959 -11.1947 2.0073 32 1 -0.7427 -8.4591 3.6099 33 1 -1.5961 -3.8651 -0.8817 34 1 -0.3944 -1.7438 -1.0482 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009514773.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:16:03 Heat of formation + Delta-G solvation = 5.218987 kcal Electronic energy + Delta-G solvation = -20220.226956 eV Core-core repulsion = 16915.425622 eV Total energy + Delta-G solvation = -3304.801335 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.061 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32246 -38.77644 -37.21621 -36.61845 -34.57259 -33.07257 -31.47034 -31.01159 -29.60722 -28.80179 -25.43655 -23.77973 -22.83290 -21.61389 -20.87026 -19.81364 -18.21978 -17.33849 -16.52448 -16.29576 -15.63675 -15.27684 -14.99442 -14.78922 -14.08874 -13.95968 -13.85415 -13.60376 -13.01002 -12.70936 -12.23468 -12.11762 -11.82083 -11.72273 -11.68254 -11.40552 -11.20565 -11.18018 -11.00400 -10.76812 -10.08312 -9.55118 -9.50516 -9.31383 -9.20925 -9.05391 -8.93680 -7.58678 -6.90648 -6.65266 -4.37478 0.55313 0.91116 1.83106 2.52740 2.91514 3.05953 3.08432 3.13593 3.19167 3.53622 3.76408 3.96097 4.49350 4.55340 4.67222 4.78253 4.87567 5.06392 5.28791 5.53992 5.61975 5.87991 5.94537 5.99834 6.15091 6.37848 6.41698 6.68996 6.87530 7.03253 7.15937 7.25813 7.60388 7.68723 7.81561 8.02927 8.18785 8.27801 8.56778 8.65683 8.89450 8.95801 10.25693 Molecular weight = 301.06amu Principal moments of inertia in cm(-1) A = 0.037696 B = 0.002662 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.598036 B =10517.791118 C =10918.986967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.101 3.899 10 C -0.205 4.205 11 C -0.083 4.083 12 C -0.001 4.001 13 N -0.640 5.640 14 C 0.539 3.461 15 O -0.523 6.523 16 C -0.108 4.108 17 C -0.086 4.086 18 C -0.113 4.113 19 C -0.094 4.094 20 C -0.043 4.043 21 Cl -0.067 7.067 22 C -0.055 4.055 23 C -0.118 4.118 24 C -0.142 4.142 25 H 0.278 0.722 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.395 0.605 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.779 -16.515 0.033 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.099 3.901 10 C -0.226 4.226 11 C -0.103 4.103 12 C -0.094 4.094 13 N -0.283 5.283 14 C 0.326 3.674 15 O -0.401 6.401 16 C -0.112 4.112 17 C -0.105 4.105 18 C -0.132 4.132 19 C -0.113 4.113 20 C -0.069 4.069 21 Cl -0.038 7.038 22 C -0.075 4.075 23 C -0.138 4.138 24 C -0.162 4.162 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.230 0.770 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.165 0.835 33 H 0.110 0.890 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.437 -16.173 0.807 17.819 hybrid contribution -0.105 0.535 -0.119 0.558 sum -7.542 -15.638 0.689 17.376 Atomic orbital electron populations 1.69769 1.07305 1.28678 1.37980 1.25900 0.94958 1.01243 0.92527 0.86135 0.80604 0.80763 0.78416 1.18555 1.19972 1.19960 1.19551 0.94836 0.90199 1.44360 0.90487 1.17750 0.92263 0.92022 0.88112 1.20815 1.01270 0.94929 1.05539 1.20418 0.92693 0.97900 0.99297 1.17246 0.94330 0.85675 1.12107 1.42857 1.48322 1.21280 1.15845 1.18109 0.83082 0.83508 0.82684 1.90776 1.38472 1.70500 1.40305 1.20079 0.99291 0.96552 0.95262 1.21489 0.94494 0.96366 0.98163 1.21063 0.99801 0.94730 0.97568 1.21229 0.97427 1.00265 0.92356 1.20821 1.01115 0.95037 0.89976 1.98379 1.97561 1.71064 1.36807 1.21189 0.96989 0.91605 0.97689 1.20310 0.98317 0.93102 1.02095 1.21198 0.97296 0.95543 1.02157 0.91147 0.88493 0.87371 0.77018 0.84812 0.84404 0.84610 0.83476 0.89026 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.86 10.60 55.55 0.59 -20.28 16 2 C 0.07 1.73 5.42 -17.33 -0.09 1.63 16 3 Si 0.92 18.85 29.56 -169.99 -5.03 13.83 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.46 -12.13 9.02 -37.86 -0.34 -12.47 16 8 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 9 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 10 C -0.21 -5.17 9.74 -39.26 -0.38 -5.55 16 11 C -0.08 -1.98 8.61 -39.78 -0.34 -2.32 16 12 C 0.00 -0.03 6.31 -83.60 -0.53 -0.56 16 13 N -0.64 -11.07 5.25 -10.61 -0.06 -11.13 16 14 C 0.54 9.51 7.61 -12.35 -0.09 9.42 16 15 O -0.52 -11.30 13.75 5.31 0.07 -11.23 16 16 C -0.11 -1.46 5.87 -104.98 -0.62 -2.07 16 17 C -0.09 -0.86 9.54 -39.18 -0.37 -1.23 16 18 C -0.11 -0.91 10.03 -39.65 -0.40 -1.31 16 19 C -0.09 -0.81 9.82 -39.45 -0.39 -1.20 16 20 C -0.04 -0.46 6.31 -39.55 -0.25 -0.71 16 21 Cl -0.07 -0.68 28.95 -51.86 -1.50 -2.18 16 22 C -0.06 -0.71 9.38 -39.14 -0.37 -1.08 16 23 C -0.12 -2.64 9.90 -39.78 -0.39 -3.03 16 24 C -0.14 -3.60 8.61 -39.26 -0.34 -3.94 16 25 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 26 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 27 H 0.11 2.54 6.20 -52.49 -0.33 2.22 16 28 H 0.39 5.21 6.86 -40.82 -0.28 4.93 16 29 H 0.13 1.04 6.41 -52.48 -0.34 0.71 16 30 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 31 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.15 2.02 7.65 -52.49 -0.40 1.62 16 33 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.13 3.46 6.13 -52.49 -0.32 3.14 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -29.96 312.78 -9.61 -39.57 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -2.90 Total: 9.04 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -5.50 Total: -22.34 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.53 Total: -31.40 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.07 Total: -11.23 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.83 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.96 -9.61 -39.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009514773.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.787 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds