Wall clock time and date at job start Fri Apr 10 2020 14:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 S 1.81003 * 109.46853 * 179.97438 * 7 5 4 9 9 C 1.76196 * 99.99846 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00030 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99637 * 180.02562 * 9 8 7 12 12 N 1.31628 * 120.00513 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99570 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46946 * 90.00549 * 13 11 9 15 15 H 1.48504 * 109.46826 * 210.00017 * 13 11 9 16 16 H 1.48496 * 109.47486 * 329.99998 * 13 11 9 17 17 C 1.50694 * 109.47384 * 239.99869 * 2 1 3 18 18 C 1.38264 * 119.96388 * 279.72984 * 17 2 1 19 19 C 1.38214 * 120.07094 * 179.72168 * 18 17 2 20 20 C 1.38423 * 119.99764 * 0.54841 * 19 18 17 21 21 F 1.35097 * 120.03279 * 179.74512 * 20 19 18 22 22 C 1.38648 * 119.92805 * 359.72234 * 20 19 18 23 23 F 1.35099 * 120.03206 * 180.02562 * 22 20 19 24 24 C 1.38217 * 119.96607 * 99.99681 * 17 2 1 25 25 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 27 27 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 28 28 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 29 29 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 30 30 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 31 31 H 0.96995 * 120.00407 * 180.02562 * 12 11 9 32 32 H 1.07996 * 119.96381 * 359.97438 * 18 17 2 33 33 H 1.07993 * 119.99901 * 180.27328 * 19 18 17 34 34 H 1.07999 * 119.99770 * 0.02795 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 16 2.7105 0.4346 4.9731 9 6 3.3121 -0.6309 6.2408 10 1 3.5201 -1.6677 6.0212 11 6 3.5178 -0.1380 7.5220 12 7 3.2629 1.1252 7.7900 13 14 4.1550 -1.2680 8.8662 14 1 5.6395 -1.2306 8.8817 15 1 3.6347 -0.8151 10.1813 16 1 3.6974 -2.6562 8.6042 17 6 2.0324 -0.7104 -1.2304 18 6 2.0717 -2.0921 -1.2623 19 6 2.5267 -2.7460 -2.3918 20 6 2.9542 -2.0174 -3.4883 21 9 3.4039 -2.6558 -4.5908 22 6 2.9200 -0.6318 -3.4542 23 9 3.3362 0.0814 -4.5234 24 6 2.4585 0.0200 -2.3237 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.2490 -1.6316 1.1527 29 1 1.9759 -1.5504 3.8327 30 1 3.6480 -1.1212 3.3986 31 1 3.4070 1.4697 8.6852 32 1 1.7428 -2.6610 -0.4053 33 1 2.5528 -3.8254 -2.4171 34 1 2.4317 1.0993 -2.2957 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032697344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:58 Heat of formation + Delta-G solvation = -107.496056 kcal Electronic energy + Delta-G solvation = -20822.469085 eV Core-core repulsion = 17096.427330 eV Total energy + Delta-G solvation = -3726.041755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.069 amu Computer time = 6.29 seconds Orbital eigenvalues (eV) -49.81218 -48.88807 -40.23406 -38.81440 -35.40450 -32.45845 -32.08446 -31.16525 -29.60024 -28.48118 -25.52261 -24.27482 -23.77744 -21.61561 -20.29856 -18.52526 -17.90580 -17.55706 -17.32618 -16.66128 -16.45420 -15.85186 -15.29879 -15.07964 -14.86918 -14.82925 -14.71684 -14.31138 -14.08757 -13.74037 -13.33372 -13.14307 -12.93048 -12.71250 -12.33115 -12.06105 -11.93067 -11.75051 -11.23781 -11.08694 -11.05311 -10.78871 -9.85182 -9.55744 -9.50018 -9.14981 -9.08683 -8.98359 -8.27777 -6.53598 -6.24570 -3.95478 0.44276 0.54887 2.80439 2.98595 3.02945 3.20494 3.25523 3.28995 3.36942 3.62536 3.95582 4.04332 4.17188 4.17587 4.52899 4.66275 4.92488 5.03930 5.10818 5.15964 5.26777 5.35699 5.39424 5.50164 5.55775 5.62340 5.66471 5.83117 5.95000 6.06587 6.09210 6.29454 6.50632 7.55989 7.57824 8.32245 8.50582 9.20894 10.82834 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.028914 B = 0.002652 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.158063 B =10555.296616 C =10984.601714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.184 3.816 3 H 0.102 0.898 4 N -0.735 5.735 5 C 0.535 3.465 6 O -0.514 6.514 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.066 4.066 18 C -0.095 4.095 19 C -0.120 4.120 20 C 0.064 3.936 21 F -0.129 7.129 22 C 0.072 3.928 23 F -0.128 7.128 24 C -0.114 4.114 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.397 0.603 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.269 0.731 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 -7.993 -21.610 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.079 3.921 3 H 0.120 0.880 4 N -0.391 5.391 5 C 0.321 3.679 6 O -0.387 6.387 7 C -0.305 4.305 8 S 0.168 5.832 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C -0.067 4.067 18 C -0.113 4.113 19 C -0.138 4.138 20 C 0.044 3.956 21 F -0.108 7.108 22 C 0.052 3.948 23 F -0.106 7.106 24 C -0.133 4.133 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.232 0.768 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.864 -5.860 -21.452 22.571 hybrid contribution 1.073 -2.575 0.297 2.805 sum -2.791 -8.435 -21.155 22.945 Atomic orbital electron populations 1.22193 0.93706 1.02632 1.03254 1.19728 0.94507 0.97034 0.80880 0.87986 1.46170 1.69738 1.13964 1.09208 1.20333 0.76663 0.87235 0.83625 1.90708 1.48034 1.15660 1.84327 1.23542 1.03731 1.04943 0.98261 1.85404 1.86363 1.12763 0.98717 1.22861 1.51129 0.98119 0.96337 0.90907 1.24994 0.95056 0.95552 0.97964 1.70009 1.45408 1.13244 1.21603 0.86168 0.79016 0.80180 0.80132 1.20258 1.20745 1.19684 1.19941 0.97703 0.93729 0.95343 1.20925 0.98752 0.93693 0.97965 1.21084 0.99789 1.01256 0.91705 1.17729 1.03336 0.88869 0.85709 1.91536 1.86812 1.81607 1.50841 1.17632 1.03122 0.87865 0.86191 1.91545 1.87849 1.77800 1.53411 1.20967 0.99418 1.01700 0.91236 0.92157 0.90800 0.91515 0.76757 0.89119 0.89149 0.92147 0.84055 0.83383 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.46 37.16 0.35 -1.15 16 2 C 0.18 1.87 2.78 -69.09 -0.19 1.68 16 3 H 0.10 1.20 7.44 -51.93 -0.39 0.81 16 4 N -0.74 -8.62 5.03 -54.94 -0.28 -8.89 16 5 C 0.54 9.18 7.81 -10.98 -0.09 9.09 16 6 O -0.51 -10.83 15.52 5.56 0.09 -10.75 16 7 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 8 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 9 C -0.54 -14.95 9.50 30.94 0.29 -14.65 16 10 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 11 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 12 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 13 Si 0.92 21.05 29.55 -169.99 -5.02 16.02 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 C -0.07 -0.55 4.96 -104.62 -0.52 -1.07 16 18 C -0.09 -0.65 9.06 -39.58 -0.36 -1.01 16 19 C -0.12 -0.84 10.02 -39.52 -0.40 -1.23 16 20 C 0.06 0.58 7.31 -39.36 -0.29 0.30 16 21 F -0.13 -1.33 17.18 2.25 0.04 -1.29 16 22 C 0.07 0.69 7.31 -39.37 -0.29 0.40 16 23 F -0.13 -1.38 17.18 2.25 0.04 -1.34 16 24 C -0.11 -0.97 9.65 -39.52 -0.38 -1.35 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.40 3.50 6.85 -40.82 -0.28 3.22 16 29 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 30 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.14 0.69 6.89 -52.49 -0.36 0.33 16 33 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 34 H 0.15 1.08 8.04 -52.49 -0.42 0.66 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -33.52 323.18 -7.01 -40.53 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -3.53 Total: -0.60 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -1.74 Total: -9.73 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.46 Total: -33.95 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.08 Total: -2.63 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.52 -7.01 -40.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032697344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.966 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.29 seconds