Wall clock time and date at job start Fri Apr 10 2020 14:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 S 1.81003 * 109.46853 * 179.97438 * 7 5 4 9 9 C 1.76196 * 99.99846 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00030 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99637 * 180.02562 * 9 8 7 12 12 N 1.31628 * 120.00513 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99570 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46946 * 90.00549 * 13 11 9 15 15 H 1.48504 * 109.46826 * 210.00017 * 13 11 9 16 16 H 1.48496 * 109.47486 * 329.99998 * 13 11 9 17 17 C 1.50694 * 109.47384 * 239.99869 * 2 1 3 18 18 C 1.38264 * 119.96388 * 279.72984 * 17 2 1 19 19 C 1.38214 * 120.07094 * 179.72168 * 18 17 2 20 20 C 1.38423 * 119.99764 * 0.54841 * 19 18 17 21 21 F 1.35097 * 120.03279 * 179.74512 * 20 19 18 22 22 C 1.38648 * 119.92805 * 359.72234 * 20 19 18 23 23 F 1.35099 * 120.03206 * 180.02562 * 22 20 19 24 24 C 1.38217 * 119.96607 * 99.99681 * 17 2 1 25 25 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 27 27 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 28 28 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 29 29 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 30 30 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 31 31 H 0.96995 * 120.00407 * 180.02562 * 12 11 9 32 32 H 1.07996 * 119.96381 * 359.97438 * 18 17 2 33 33 H 1.07993 * 119.99901 * 180.27328 * 19 18 17 34 34 H 1.07999 * 119.99770 * 0.02795 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 16 2.7105 0.4346 4.9731 9 6 3.3121 -0.6309 6.2408 10 1 3.5201 -1.6677 6.0212 11 6 3.5178 -0.1380 7.5220 12 7 3.2629 1.1252 7.7900 13 14 4.1550 -1.2680 8.8662 14 1 5.6395 -1.2306 8.8817 15 1 3.6347 -0.8151 10.1813 16 1 3.6974 -2.6562 8.6042 17 6 2.0324 -0.7104 -1.2304 18 6 2.0717 -2.0921 -1.2623 19 6 2.5267 -2.7460 -2.3918 20 6 2.9542 -2.0174 -3.4883 21 9 3.4039 -2.6558 -4.5908 22 6 2.9200 -0.6318 -3.4542 23 9 3.3362 0.0814 -4.5234 24 6 2.4585 0.0200 -2.3237 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.2490 -1.6316 1.1527 29 1 1.9759 -1.5504 3.8327 30 1 3.6480 -1.1212 3.3986 31 1 3.4070 1.4697 8.6852 32 1 1.7428 -2.6610 -0.4053 33 1 2.5528 -3.8254 -2.4171 34 1 2.4317 1.0993 -2.2957 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032697344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:56 Heat of formation + Delta-G solvation = -128.815856 kcal Electronic energy + Delta-G solvation = -20823.393581 eV Core-core repulsion = 17096.427330 eV Total energy + Delta-G solvation = -3726.966251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.069 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -50.55107 -49.63550 -41.18064 -39.86376 -36.44162 -34.56343 -33.10725 -31.89275 -30.55958 -29.60942 -27.63666 -25.06705 -24.41728 -22.53168 -21.44235 -19.93196 -19.09032 -18.34831 -18.20737 -17.70758 -17.39231 -16.89911 -16.85465 -16.41638 -16.05884 -15.81999 -15.58935 -15.49754 -14.99863 -14.77736 -14.53137 -14.45464 -13.94043 -13.77931 -13.33845 -13.14876 -13.10245 -12.87660 -12.68694 -12.56814 -12.55658 -11.99142 -11.70600 -11.12413 -10.95324 -10.26393 -10.24253 -10.10041 -9.73603 -8.63689 -8.32808 -6.10146 -0.23087 -0.05928 1.29105 1.44029 1.49108 1.58915 1.63660 2.15061 2.29252 2.37417 2.72402 3.01637 3.23722 3.33302 3.36225 3.56539 3.91813 3.97896 4.06467 4.20179 4.29076 4.37134 4.55497 4.62152 4.72714 4.79115 4.83427 4.91982 4.97328 5.18545 5.28851 5.44291 5.50294 5.65581 6.21902 6.49262 7.08972 7.25315 8.76255 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.028914 B = 0.002652 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.158063 B =10555.296616 C =10984.601714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.186 3.814 3 H 0.084 0.916 4 N -0.709 5.709 5 C 0.539 3.461 6 O -0.560 6.560 7 C -0.131 4.131 8 S -0.152 6.152 9 C -0.545 4.545 10 H 0.084 0.916 11 C 0.013 3.987 12 N -0.912 5.912 13 Si 0.997 3.003 14 H -0.269 1.269 15 H -0.280 1.280 16 H -0.257 1.257 17 C -0.068 4.068 18 C -0.084 4.084 19 C -0.108 4.108 20 C 0.051 3.949 21 F -0.139 7.139 22 C 0.053 3.947 23 F -0.141 7.141 24 C -0.114 4.114 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.416 0.584 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.270 0.730 32 H 0.169 0.831 33 H 0.176 0.824 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 -11.023 -22.023 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.081 3.919 3 H 0.102 0.898 4 N -0.364 5.364 5 C 0.325 3.675 6 O -0.438 6.438 7 C -0.282 4.282 8 S 0.075 5.925 9 C -0.693 4.693 10 H 0.102 0.898 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.819 3.181 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.180 1.180 17 C -0.069 4.069 18 C -0.103 4.103 19 C -0.127 4.127 20 C 0.031 3.969 21 F -0.118 7.118 22 C 0.033 3.967 23 F -0.119 7.119 24 C -0.133 4.133 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.254 0.746 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.079 0.921 32 H 0.187 0.813 33 H 0.194 0.806 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.817 -8.939 -21.916 23.975 hybrid contribution 1.027 -1.667 0.276 1.977 sum -2.790 -10.606 -21.640 24.261 Atomic orbital electron populations 1.22153 0.92787 1.03730 1.02696 1.19735 0.95157 0.96279 0.80701 0.89837 1.45871 1.67915 1.14632 1.07994 1.20016 0.76500 0.86555 0.84474 1.90704 1.50375 1.17638 1.85089 1.23388 1.05671 1.03274 0.95858 1.85592 1.86735 1.17313 1.02850 1.23213 1.50799 0.98486 0.96775 0.89790 1.26114 0.95126 0.97162 1.00787 1.70178 1.46883 1.15511 1.22276 0.84971 0.78444 0.78318 0.76360 1.19448 1.20489 1.18045 1.19729 0.98509 0.94387 0.94226 1.21207 0.97398 0.92967 0.98689 1.21364 0.98243 1.02522 0.90542 1.18034 1.03830 0.88843 0.86161 1.91510 1.87051 1.81703 1.51534 1.17826 1.04312 0.88278 0.86302 1.91507 1.88182 1.78172 1.54068 1.21025 0.99081 1.02198 0.91036 0.90188 0.93578 0.89902 0.74556 0.86851 0.87171 0.92056 0.81323 0.80626 0.82616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.46 71.98 0.68 -1.95 16 2 C 0.19 3.44 2.78 44.24 0.12 3.57 16 3 H 0.08 1.93 7.44 -2.39 -0.02 1.91 16 4 N -0.71 -14.83 5.03 -446.11 -2.24 -17.08 16 5 C 0.54 17.90 7.81 87.66 0.68 18.59 16 6 O -0.56 -24.04 15.52 -3.03 -0.05 -24.09 16 7 C -0.13 -4.78 6.16 71.24 0.44 -4.34 16 8 S -0.15 -8.16 20.57 -56.49 -1.16 -9.32 16 9 C -0.54 -30.26 9.50 67.96 0.65 -29.62 16 10 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 11 C 0.01 0.72 5.49 84.86 0.47 1.18 16 12 N -0.91 -55.27 13.22 21.65 0.29 -54.99 16 13 Si 1.00 42.69 29.55 68.60 2.03 44.72 16 14 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 15 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 17 C -0.07 -0.95 4.96 -19.86 -0.10 -1.05 16 18 C -0.08 -0.82 9.06 22.27 0.20 -0.62 16 19 C -0.11 -1.13 10.02 22.31 0.22 -0.91 16 20 C 0.05 0.85 7.31 22.41 0.16 1.01 16 21 F -0.14 -2.69 17.18 44.97 0.77 -1.92 16 22 C 0.05 0.96 7.31 22.41 0.16 1.13 16 23 F -0.14 -3.03 17.18 44.97 0.77 -2.26 16 24 C -0.11 -1.79 9.65 22.31 0.22 -1.57 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.42 5.62 6.85 -92.71 -0.64 4.99 16 29 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 31 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.17 0.72 6.89 -2.91 -0.02 0.70 16 33 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.16 2.15 8.04 -2.91 -0.02 2.13 16 Total: -1.00 -75.59 323.18 4.83 -70.77 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.51 Total: 8.75 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 3.91 Total: -14.59 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.96 Total: -72.07 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 1.55 Total: -4.18 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.32 kcal Total: -75.59 4.83 -70.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032697344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.050 kcal (2) G-P(sol) polarization free energy of solvation -75.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds