Wall clock time and date at job start Fri Apr 10 2020 14:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 5 5 C 1.34777 * 120.00199 * 85.00207 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 S 1.80999 * 109.46903 * 179.72354 * 7 5 4 9 9 C 1.76200 * 99.99730 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00351 * 0.02562 * 9 8 7 11 11 C 1.38796 * 120.00095 * 179.97438 * 9 8 7 12 12 N 1.31634 * 119.99941 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00384 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46990 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47522 * 119.99735 * 13 11 9 16 16 H 1.48500 * 109.47073 * 240.00101 * 13 11 9 17 17 C 1.50697 * 109.46811 * 119.99346 * 2 1 3 18 18 C 1.38258 * 119.96649 * 259.99601 * 17 2 1 19 19 C 1.38214 * 120.07053 * 180.02562 * 18 17 2 20 20 C 1.38419 * 119.99856 * 0.02562 * 19 18 17 21 21 F 1.35096 * 120.03210 * 180.02562 * 20 19 18 22 22 C 1.38643 * 119.92921 * 359.97438 * 20 19 18 23 23 F 1.35103 * 120.03473 * 179.97438 * 22 20 19 24 24 C 1.38212 * 119.96466 * 79.73498 * 17 2 1 25 25 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 27 27 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 28 28 H 0.97000 * 119.99484 * 264.99304 * 4 2 1 29 29 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 30 30 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 31 31 H 0.97002 * 120.00288 * 179.97438 * 12 11 9 32 32 H 1.07995 * 119.96620 * 359.97438 * 18 17 2 33 33 H 1.08002 * 120.00335 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.00002 * 359.96997 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6435 -0.7303 -3.5891 8 16 2.6982 0.4311 -4.9762 9 6 3.2960 -0.6356 -6.2449 10 1 3.5060 -1.6719 -6.0247 11 6 3.4959 -0.1444 -7.5276 12 7 3.2385 1.1182 -7.7964 13 14 4.1289 -1.2754 -8.8728 14 1 4.3383 -2.6365 -8.3172 15 1 3.1360 -1.3376 -9.9752 16 1 5.4163 -0.7511 -9.3952 17 6 2.0322 -0.7103 1.2305 18 6 2.4586 0.0205 2.3240 19 6 2.9201 -0.6287 3.4536 20 6 2.9564 -2.0119 3.4906 21 9 3.4069 -2.6472 4.5945 22 6 2.5288 -2.7447 2.3940 23 9 2.5638 -4.0948 2.4276 24 6 2.0611 -2.0916 1.2668 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 2.2491 -1.6318 -1.1525 29 1 3.6436 -1.1225 -3.4039 30 1 1.9697 -1.5525 -3.8299 31 1 3.3785 1.4616 -8.6927 32 1 2.4317 1.0997 2.2953 33 1 3.2533 -0.0568 4.3070 34 1 1.7234 -2.6614 0.4137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032697347.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:08 Heat of formation + Delta-G solvation = -128.818519 kcal Electronic energy + Delta-G solvation = -20885.216157 eV Core-core repulsion = 17158.249791 eV Total energy + Delta-G solvation = -3726.966366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.069 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.54504 -49.62957 -41.17833 -39.86865 -36.46264 -34.57623 -33.02998 -31.91392 -30.62651 -29.59539 -27.65096 -25.14099 -24.32999 -22.49306 -21.48036 -19.94298 -19.10631 -18.36529 -18.18711 -17.50713 -17.38473 -17.18139 -16.87268 -16.42922 -16.05196 -15.91029 -15.56486 -15.20469 -15.07233 -14.83561 -14.54036 -14.44659 -14.01900 -13.70904 -13.34622 -13.15907 -13.14348 -12.91092 -12.73678 -12.58659 -12.34287 -12.11465 -11.70024 -11.15158 -10.96424 -10.26484 -10.24426 -10.13066 -9.72005 -8.64757 -8.34311 -6.11472 -0.22328 -0.05729 1.27942 1.41750 1.47725 1.58692 1.61633 2.15081 2.27762 2.39123 2.71447 3.00090 3.21524 3.32603 3.36104 3.55281 3.94751 3.96476 4.01741 4.23612 4.33161 4.34758 4.52869 4.57749 4.72988 4.78041 4.80570 4.94336 4.99967 5.19051 5.28879 5.43226 5.50140 5.66100 6.20785 6.44757 7.07636 7.21978 8.74983 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.025558 B = 0.002791 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.294576 B =10030.864647 C =10696.875956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.185 3.815 3 H 0.095 0.905 4 N -0.713 5.713 5 C 0.540 3.460 6 O -0.557 6.557 7 C -0.133 4.133 8 S -0.147 6.147 9 C -0.546 4.546 10 H 0.082 0.918 11 C 0.014 3.986 12 N -0.910 5.910 13 Si 0.997 3.003 14 H -0.258 1.258 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.068 4.068 18 C -0.079 4.079 19 C -0.111 4.111 20 C 0.051 3.949 21 F -0.140 7.140 22 C 0.054 3.946 23 F -0.140 7.140 24 C -0.118 4.118 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.412 0.588 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.271 0.729 32 H 0.169 0.831 33 H 0.175 0.825 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.627 -6.992 23.901 25.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.081 3.919 3 H 0.113 0.887 4 N -0.368 5.368 5 C 0.326 3.674 6 O -0.434 6.434 7 C -0.284 4.284 8 S 0.081 5.919 9 C -0.694 4.694 10 H 0.100 0.900 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.819 3.181 14 H -0.181 1.181 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.069 4.069 18 C -0.097 4.097 19 C -0.129 4.129 20 C 0.031 3.969 21 F -0.118 7.118 22 C 0.034 3.966 23 F -0.118 7.118 24 C -0.137 4.137 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.250 0.750 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.186 0.814 33 H 0.192 0.808 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.099 -4.996 23.752 24.468 hybrid contribution 0.855 -2.628 -0.710 2.853 sum -2.243 -7.624 23.041 24.373 Atomic orbital electron populations 1.22168 0.93029 1.03273 1.03020 1.19836 0.95042 0.96586 0.80425 0.88676 1.45958 1.67929 1.14529 1.08377 1.19955 0.76503 0.86574 0.84365 1.90697 1.50241 1.17424 1.85070 1.23401 1.05563 1.03339 0.96132 1.85524 1.86860 1.17142 1.02415 1.23240 1.50912 0.98489 0.96744 0.90011 1.26099 0.95089 0.97184 1.00735 1.70181 1.46890 1.15472 1.22166 0.84924 0.77837 0.78246 0.77063 1.18123 1.19963 1.19988 1.19780 0.98771 0.92512 0.95867 1.21285 0.95429 1.02278 0.90714 1.21365 0.99991 0.90469 1.01122 1.18037 1.03446 0.92055 0.83403 1.91509 1.86968 1.82496 1.50858 1.17809 1.05647 0.77142 0.95971 1.91515 1.94600 1.28870 1.96860 1.20958 1.00613 0.94797 0.97337 0.91138 0.89226 0.93520 0.75023 0.87369 0.87210 0.92001 0.81350 0.80801 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.46 71.98 0.68 -2.00 16 2 C 0.19 3.39 2.77 44.24 0.12 3.52 16 3 H 0.10 2.00 7.44 -2.38 -0.02 1.98 16 4 N -0.71 -15.92 5.03 -446.09 -2.24 -18.16 16 5 C 0.54 18.33 7.81 87.66 0.68 19.02 16 6 O -0.56 -23.74 15.53 -3.04 -0.05 -23.79 16 7 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 8 S -0.15 -7.93 20.57 -56.49 -1.16 -9.09 16 9 C -0.55 -30.72 9.50 67.95 0.65 -30.07 16 10 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 11 C 0.01 0.77 5.49 84.86 0.47 1.24 16 12 N -0.91 -55.28 13.22 21.65 0.29 -55.00 16 13 Si 1.00 43.20 29.55 68.60 2.03 45.22 16 14 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 C -0.07 -0.95 4.95 -19.87 -0.10 -1.05 16 18 C -0.08 -0.85 9.66 22.27 0.22 -0.63 16 19 C -0.11 -1.23 10.02 22.31 0.22 -1.01 16 20 C 0.05 0.84 7.31 22.41 0.16 1.00 16 21 F -0.14 -2.71 17.18 44.97 0.77 -1.94 16 22 C 0.05 0.96 7.31 22.41 0.16 1.12 16 23 F -0.14 -2.92 17.18 44.97 0.77 -2.15 16 24 C -0.12 -1.71 9.03 22.30 0.20 -1.51 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.41 6.85 6.88 -92.71 -0.64 6.21 16 29 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 31 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.17 1.05 8.03 -2.91 -0.02 1.02 16 33 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 34 H 0.16 1.82 6.93 -2.91 -0.02 1.80 16 Total: -1.00 -74.79 323.23 4.82 -69.97 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.51 Total: 9.90 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 3.91 Total: -14.97 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -1.96 Total: -73.16 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 1.55 Total: -4.09 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.09 kcal Total: -74.79 4.82 -69.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032697347.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.849 kcal (2) G-P(sol) polarization free energy of solvation -74.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds