Wall clock time and date at job start Fri Apr 10 2020 14:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99824 * 2 1 4 4 C 1.50696 * 109.46828 * 270.00394 * 3 2 1 5 5 H 1.07997 * 120.00729 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99836 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00126 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00171 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47143 * 59.99715 * 8 6 4 10 10 H 1.48496 * 109.47091 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46787 * 299.99523 * 8 6 4 12 12 C 1.34771 * 119.99891 * 180.02562 * 2 1 3 13 13 O 1.21284 * 120.00031 * 179.97438 * 12 2 1 14 14 C 1.50700 * 120.00081 * 359.97438 * 12 2 1 15 15 S 1.81407 * 109.47171 * 180.02562 * 14 12 2 16 16 C 1.76200 * 102.99726 * 179.97438 * 15 14 12 17 17 C 1.38867 * 120.07696 * 0.02562 * 16 15 14 18 18 C 1.38333 * 119.92390 * 179.97438 * 17 16 15 19 19 F 1.35102 * 119.96781 * 180.02562 * 18 17 16 20 20 C 1.38501 * 120.06397 * 0.02562 * 18 17 16 21 21 C 1.38290 * 120.14499 * 359.95681 * 20 18 17 22 22 C 1.38254 * 120.08029 * 0.04502 * 21 20 18 23 23 F 1.35103 * 120.03477 * 180.25773 * 22 21 20 24 24 H 1.09001 * 109.46596 * 269.99934 * 1 2 3 25 25 H 1.09002 * 109.47378 * 29.99718 * 1 2 3 26 26 H 1.08996 * 109.47708 * 150.00086 * 1 2 3 27 27 H 1.08994 * 109.46815 * 30.00358 * 3 2 1 28 28 H 1.08995 * 109.46628 * 150.00387 * 3 2 1 29 29 H 0.96996 * 120.00192 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47457 * 60.00156 * 14 12 2 31 31 H 1.09007 * 109.46911 * 299.99984 * 14 12 2 32 32 H 1.08007 * 120.03700 * 359.95552 * 17 16 15 33 33 H 1.07994 * 119.92551 * 180.02562 * 20 18 17 34 34 H 1.08001 * 119.96318 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1267 2.8775 -1.6728 7 7 3.5541 3.6177 -0.6732 8 14 3.4386 3.4165 -3.4340 9 1 2.1412 3.5943 -4.1343 10 1 4.1820 4.7020 -3.4340 11 1 4.2411 2.3812 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 16 2.5642 -3.8511 -0.0005 16 6 1.5167 -5.2680 0.0002 17 6 0.1367 -5.1132 0.0001 18 6 -0.6827 -6.2278 0.0002 19 9 -2.0254 -6.0783 -0.0004 20 6 -0.1279 -7.4968 0.0009 21 6 1.2461 -7.6541 0.0007 22 6 2.0706 -6.5443 0.0006 23 9 3.4127 -6.6990 -0.0049 24 1 -0.3632 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1384 0.5138 29 1 4.0315 4.4432 -0.8504 30 1 0.7584 -2.5299 -0.8902 31 1 0.7590 -2.5302 0.8898 32 1 -0.2964 -4.1238 0.0003 33 1 -0.7696 -8.3654 0.0006 34 1 1.6756 -8.6450 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035121672.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:23 Heat of formation + Delta-G solvation = -111.697019 kcal Electronic energy + Delta-G solvation = -21089.792849 eV Core-core repulsion = 17363.568927 eV Total energy + Delta-G solvation = -3726.223922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.069 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.99655 -49.97933 -40.69209 -39.67777 -36.71542 -34.80977 -32.85222 -31.57801 -30.93588 -29.24111 -27.32810 -24.92974 -24.66094 -23.70385 -20.57836 -19.34984 -18.74084 -18.56259 -18.22678 -18.03147 -17.32700 -17.02710 -16.90564 -16.71935 -16.40338 -16.11367 -15.42564 -15.12121 -14.81958 -14.77196 -14.36521 -14.24288 -13.94681 -13.69474 -13.68839 -13.49784 -13.18236 -13.16640 -12.82433 -12.57841 -12.28549 -12.19953 -11.76028 -11.33684 -11.00283 -10.88452 -10.66117 -9.84209 -9.53214 -8.63832 -8.25047 -6.39992 -0.22223 -0.11056 0.06371 1.14236 1.35977 1.40519 1.47345 1.61351 2.21772 2.21871 2.39893 3.05176 3.06835 3.13553 3.47013 3.54488 3.86156 3.87605 3.98824 4.07057 4.32246 4.39078 4.68489 4.69505 4.85503 4.91692 4.92581 4.96111 5.00022 5.18743 5.49502 5.66044 5.76057 6.01530 6.56721 6.69539 7.18510 7.34159 8.82114 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.023100 B = 0.003281 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.843861 B = 8532.557023 C = 9088.147424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.601 5.601 3 C 0.260 3.740 4 C -0.547 4.547 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.511 3.489 13 O -0.581 6.581 14 C -0.130 4.130 15 S -0.059 6.059 16 C -0.116 4.116 17 C -0.151 4.151 18 C 0.107 3.893 19 F -0.134 7.134 20 C -0.122 4.122 21 C -0.093 4.093 22 C 0.082 3.918 23 F -0.139 7.139 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.030 0.970 28 H -0.001 1.001 29 H 0.268 0.732 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.181 0.819 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 -22.971 1.855 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.332 5.332 3 C 0.139 3.861 4 C -0.585 4.585 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.791 3.209 9 H -0.183 1.183 10 H -0.204 1.204 11 H -0.204 1.204 12 C 0.298 3.702 13 O -0.461 6.461 14 C -0.281 4.281 15 S 0.186 5.814 16 C -0.231 4.231 17 C -0.176 4.176 18 C 0.086 3.914 19 F -0.113 7.113 20 C -0.143 4.143 21 C -0.112 4.112 22 C 0.056 3.944 23 F -0.118 7.118 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.048 0.952 28 H 0.017 0.983 29 H 0.077 0.923 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.176 0.824 33 H 0.198 0.802 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.548 -22.533 1.910 25.392 hybrid contribution -0.698 0.880 -0.668 1.307 sum -12.246 -21.653 1.242 24.908 Atomic orbital electron populations 1.22066 0.77298 1.04484 1.03152 1.48078 1.08690 1.05820 1.70598 1.18816 0.91222 0.79931 0.96178 1.21678 1.37161 1.06658 0.93022 0.92671 1.25856 0.94820 0.96418 1.01981 1.70037 1.38729 1.14845 1.33122 0.85478 0.78919 0.77341 0.79157 1.18265 1.20352 1.20450 1.20134 0.87462 0.85499 0.77110 1.90710 1.16036 1.87477 1.51915 1.23879 1.01561 0.92369 1.10275 1.86996 1.09322 0.94087 1.91004 1.22012 0.97408 0.96812 1.06853 1.21154 0.90591 1.00673 1.05146 1.17638 0.77082 0.94366 1.02363 1.91537 1.29349 1.96607 1.93786 1.21362 0.95087 0.96809 1.01070 1.21244 0.92515 0.98636 0.98852 1.17464 0.77677 0.92862 1.06357 1.91518 1.30108 1.96219 1.93932 0.90474 0.91050 0.88532 0.95219 0.98282 0.92322 0.83789 0.83269 0.82434 0.80206 0.80203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.91 10.24 127.77 1.31 3.22 16 2 N -0.60 -24.40 2.86 -851.14 -2.43 -26.83 16 3 C 0.26 13.80 5.16 85.63 0.44 14.24 16 4 C -0.55 -31.23 9.39 25.60 0.24 -30.99 16 5 H 0.06 3.10 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.49 5.46 84.65 0.46 0.95 16 7 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 8 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 9 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 C 0.51 20.70 7.69 87.66 0.67 21.37 16 13 O -0.58 -30.20 15.44 -3.04 -0.05 -30.25 16 14 C -0.13 -3.45 3.37 71.24 0.24 -3.21 16 15 S -0.06 -1.81 20.66 -56.49 -1.17 -2.98 16 16 C -0.12 -2.65 6.11 22.64 0.14 -2.51 16 17 C -0.15 -2.68 9.34 22.44 0.21 -2.47 16 18 C 0.11 1.63 7.29 22.36 0.16 1.79 16 19 F -0.13 -2.14 17.27 44.97 0.78 -1.37 16 20 C -0.12 -1.35 10.02 22.34 0.22 -1.13 16 21 C -0.09 -1.20 10.02 22.29 0.22 -0.98 16 22 C 0.08 1.73 7.28 22.49 0.16 1.90 16 23 F -0.14 -3.53 16.76 44.97 0.75 -2.78 16 24 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 26 H 0.10 1.78 6.44 -2.39 -0.02 1.77 16 27 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 28 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.14 2.94 7.01 -2.39 -0.02 2.93 16 31 H 0.15 2.84 7.71 -2.39 -0.02 2.82 16 32 H 0.16 2.26 5.88 -2.91 -0.02 2.24 16 33 H 0.18 0.81 8.06 -2.91 -0.02 0.78 16 34 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -76.89 319.48 5.82 -71.07 By element: Atomic # 1 Polarization: -1.24 SS G_CDS: 1.14 Total: -0.11 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 4.49 Total: 2.19 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -2.15 Total: -82.55 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.05 Total: -30.25 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 1.53 Total: -4.14 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -1.17 Total: -2.98 kcal Total: -76.89 5.82 -71.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035121672.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.629 kcal (2) G-P(sol) polarization free energy of solvation -76.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds