Wall clock time and date at job start Fri Apr 10 2020 14:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46716 * 2 1 4 4 N 1.46492 * 109.47155 * 120.00240 * 2 1 3 5 5 C 1.34781 * 120.00059 * 275.00062 * 4 2 1 6 6 O 1.21281 * 120.00141 * 0.02562 * 5 4 2 7 7 C 1.50696 * 119.99934 * 180.02562 * 5 4 2 8 8 S 1.81007 * 109.47265 * 179.97438 * 7 5 4 9 9 C 1.76202 * 100.00144 * 180.02562 * 8 7 5 10 10 H 1.07990 * 119.99792 * 0.02562 * 9 8 7 11 11 C 1.38794 * 119.99466 * 180.02562 * 9 8 7 12 12 N 1.31628 * 120.00751 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99490 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47463 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47065 * 120.00105 * 13 11 9 16 16 H 1.48506 * 109.47279 * 239.99650 * 13 11 9 17 17 C 1.50699 * 109.47057 * 240.00581 * 2 1 3 18 18 C 1.38212 * 119.99671 * 264.99995 * 17 2 1 19 19 C 1.38430 * 119.99791 * 180.27991 * 18 17 2 20 20 F 1.35097 * 120.00016 * 179.74882 * 19 18 17 21 21 C 1.38468 * 119.99789 * 359.52640 * 19 18 17 22 22 C 1.38167 * 120.00434 * 0.43067 * 21 19 18 23 23 C 1.38425 * 120.00323 * 85.02119 * 17 2 1 24 24 F 1.35104 * 120.00041 * 359.95285 * 23 17 2 25 25 H 1.08997 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47246 * 299.99525 * 1 2 3 27 27 H 1.09001 * 109.47275 * 60.00079 * 1 2 3 28 28 H 0.97003 * 120.00031 * 95.00343 * 4 2 1 29 29 H 1.08994 * 109.47609 * 299.99880 * 7 5 4 30 30 H 1.08999 * 109.47105 * 60.00348 * 7 5 4 31 31 H 0.96997 * 120.00320 * 180.02562 * 12 11 9 32 32 H 1.08002 * 119.99812 * 359.97438 * 18 17 2 33 33 H 1.08004 * 120.00230 * 180.23547 * 21 19 18 34 34 H 1.07992 * 119.99977 * 179.81327 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1583 2.4118 7 6 2.6500 -0.7286 3.5874 8 16 2.7115 0.4345 4.9729 9 6 3.3159 -0.6305 6.2399 10 1 3.5259 -1.6667 6.0196 11 6 3.5222 -0.1376 7.5208 12 7 3.2668 1.1255 7.7891 13 14 4.1623 -1.2668 8.8641 14 1 4.3681 -2.6289 8.3095 15 1 5.4523 -0.7415 9.3793 16 1 3.1750 -1.3278 9.9718 17 6 2.0324 -0.7103 -1.2305 18 6 2.3611 -2.0513 -1.1685 19 6 2.8280 -2.7024 -2.2974 20 9 3.1541 -4.0119 -2.2356 21 6 2.9564 -2.0125 -3.4911 22 6 2.6270 -0.6721 -3.5533 23 6 2.1650 -0.0196 -2.4228 24 9 1.8432 1.2912 -2.4835 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.2491 -1.6318 1.1525 29 1 1.9779 -1.5509 3.8324 30 1 3.6493 -1.1203 3.3977 31 1 3.4113 1.4700 8.6843 32 1 2.2583 -2.5900 -0.2381 33 1 3.3171 -2.5213 -4.3728 34 1 2.7301 -0.1334 -4.4836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040090285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:24 Heat of formation + Delta-G solvation = -103.870198 kcal Electronic energy + Delta-G solvation = -21112.429585 eV Core-core repulsion = 17386.545059 eV Total energy + Delta-G solvation = -3725.884526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.069 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -49.31142 -49.26831 -40.08392 -38.78755 -35.60192 -32.44375 -32.05405 -30.89379 -29.75179 -28.48375 -25.51018 -24.59420 -23.39505 -21.62731 -20.31432 -18.45504 -17.79496 -17.62150 -17.44403 -16.28608 -16.22405 -15.89936 -15.69484 -15.04326 -14.84894 -14.81586 -14.76708 -14.06776 -14.01754 -13.57951 -13.45535 -13.03869 -12.97533 -12.67162 -12.40336 -12.16407 -11.96235 -11.61587 -11.19685 -11.07840 -11.03317 -10.76732 -9.82750 -9.65798 -9.46281 -9.14170 -9.07547 -8.89014 -8.25474 -6.51795 -6.23093 -3.93856 0.48839 0.54027 2.84372 2.96564 3.02383 3.20962 3.26610 3.31126 3.60948 3.67503 3.77235 4.02167 4.18382 4.19893 4.49794 4.66367 4.94118 5.07854 5.12403 5.16084 5.21977 5.41675 5.46991 5.50377 5.57298 5.58962 5.64603 5.84819 5.90250 6.07928 6.10688 6.31398 6.50803 7.56776 7.59208 8.34139 8.52056 9.22468 10.84364 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.023380 B = 0.003063 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.298134 B = 9138.873883 C =10004.534287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.184 3.816 3 H 0.106 0.894 4 N -0.736 5.736 5 C 0.535 3.465 6 O -0.512 6.512 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.089 4.089 18 C -0.124 4.124 19 C 0.097 3.903 20 F -0.133 7.133 21 C -0.128 4.128 22 C -0.119 4.119 23 C 0.100 3.900 24 F -0.128 7.128 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.396 0.604 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.268 0.732 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 -7.786 -23.916 25.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.079 3.921 3 H 0.124 0.876 4 N -0.393 5.393 5 C 0.321 3.679 6 O -0.386 6.386 7 C -0.305 4.305 8 S 0.168 5.832 9 C -0.684 4.684 10 H 0.092 0.908 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.091 4.091 18 C -0.143 4.143 19 C 0.077 3.923 20 F -0.112 7.112 21 C -0.147 4.147 22 C -0.138 4.138 23 C 0.080 3.920 24 F -0.106 7.106 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.233 0.767 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.030 -5.663 -23.667 24.523 hybrid contribution 0.907 -2.605 0.736 2.855 sum -2.123 -8.268 -22.931 24.469 Atomic orbital electron populations 1.22164 0.93437 1.02617 1.03412 1.19643 0.94691 0.97077 0.80697 0.87568 1.46209 1.69841 1.13953 1.09286 1.20344 0.76694 0.87242 0.83590 1.90712 1.47923 1.15640 1.84279 1.23540 1.03738 1.04952 0.98231 1.85412 1.86276 1.12796 0.98726 1.22906 1.50913 0.98213 0.96354 0.90848 1.24993 0.95081 0.95546 0.97968 1.70023 1.45545 1.13217 1.21467 0.86113 0.78529 0.80127 0.80697 1.19607 1.20554 1.20561 1.19917 1.00407 0.93872 0.94917 1.20787 1.00950 0.93914 0.98617 1.17596 1.01111 0.78856 0.94728 1.91541 1.90209 1.32397 1.97014 1.21010 1.01986 0.94243 0.97494 1.21000 1.00091 0.94488 0.98250 1.17415 1.01598 0.78882 0.94134 1.91550 1.90192 1.32006 1.96866 0.92121 0.90601 0.91508 0.76729 0.89087 0.89124 0.92212 0.83693 0.83568 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.47 37.16 0.35 -1.39 16 2 C 0.18 2.22 2.56 -69.08 -0.18 2.04 16 3 H 0.11 1.51 7.23 -51.93 -0.38 1.13 16 4 N -0.74 -9.65 5.00 -54.94 -0.27 -9.93 16 5 C 0.53 9.73 7.81 -10.99 -0.09 9.65 16 6 O -0.51 -11.33 15.53 5.56 0.09 -11.25 16 7 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 8 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 9 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 10 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 13 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 C -0.09 -0.88 5.06 -104.56 -0.53 -1.41 16 18 C -0.12 -1.07 9.21 -39.52 -0.36 -1.44 16 19 C 0.10 0.81 7.30 -39.43 -0.29 0.52 16 20 F -0.13 -1.22 17.27 2.25 0.04 -1.18 16 21 C -0.13 -0.87 10.02 -39.52 -0.40 -1.26 16 22 C -0.12 -0.84 10.02 -39.52 -0.40 -1.23 16 23 C 0.10 0.93 7.24 -39.43 -0.29 0.65 16 24 F -0.13 -1.36 16.56 2.25 0.04 -1.32 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.40 4.05 6.21 -40.82 -0.25 3.80 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 30 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.15 1.07 6.07 -52.49 -0.32 0.75 16 33 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 34 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 LS Contribution 321.31 15.07 4.84 4.84 Total: -1.00 -33.67 321.31 -6.97 -40.65 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -3.45 Total: 0.59 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -1.75 Total: -9.59 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.46 Total: -35.25 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.08 Total: -2.50 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.67 -6.97 -40.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040090285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.224 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds