Wall clock time and date at job start Fri Apr 10 2020 14:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46716 * 2 1 4 4 N 1.46492 * 109.47155 * 120.00240 * 2 1 3 5 5 C 1.34781 * 120.00059 * 275.00062 * 4 2 1 6 6 O 1.21281 * 120.00141 * 0.02562 * 5 4 2 7 7 C 1.50696 * 119.99934 * 180.02562 * 5 4 2 8 8 S 1.81007 * 109.47265 * 179.97438 * 7 5 4 9 9 C 1.76202 * 100.00144 * 180.02562 * 8 7 5 10 10 H 1.07990 * 119.99792 * 0.02562 * 9 8 7 11 11 C 1.38794 * 119.99466 * 180.02562 * 9 8 7 12 12 N 1.31628 * 120.00751 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99490 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47463 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47065 * 120.00105 * 13 11 9 16 16 H 1.48506 * 109.47279 * 239.99650 * 13 11 9 17 17 C 1.50699 * 109.47057 * 240.00581 * 2 1 3 18 18 C 1.38212 * 119.99671 * 264.99995 * 17 2 1 19 19 C 1.38430 * 119.99791 * 180.27991 * 18 17 2 20 20 F 1.35097 * 120.00016 * 179.74882 * 19 18 17 21 21 C 1.38468 * 119.99789 * 359.52640 * 19 18 17 22 22 C 1.38167 * 120.00434 * 0.43067 * 21 19 18 23 23 C 1.38425 * 120.00323 * 85.02119 * 17 2 1 24 24 F 1.35104 * 120.00041 * 359.95285 * 23 17 2 25 25 H 1.08997 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47246 * 299.99525 * 1 2 3 27 27 H 1.09001 * 109.47275 * 60.00079 * 1 2 3 28 28 H 0.97003 * 120.00031 * 95.00343 * 4 2 1 29 29 H 1.08994 * 109.47609 * 299.99880 * 7 5 4 30 30 H 1.08999 * 109.47105 * 60.00348 * 7 5 4 31 31 H 0.96997 * 120.00320 * 180.02562 * 12 11 9 32 32 H 1.08002 * 119.99812 * 359.97438 * 18 17 2 33 33 H 1.08004 * 120.00230 * 180.23547 * 21 19 18 34 34 H 1.07992 * 119.99977 * 179.81327 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1583 2.4118 7 6 2.6500 -0.7286 3.5874 8 16 2.7115 0.4345 4.9729 9 6 3.3159 -0.6305 6.2399 10 1 3.5259 -1.6667 6.0196 11 6 3.5222 -0.1376 7.5208 12 7 3.2668 1.1255 7.7891 13 14 4.1623 -1.2668 8.8641 14 1 4.3681 -2.6289 8.3095 15 1 5.4523 -0.7415 9.3793 16 1 3.1750 -1.3278 9.9718 17 6 2.0324 -0.7103 -1.2305 18 6 2.3611 -2.0513 -1.1685 19 6 2.8280 -2.7024 -2.2974 20 9 3.1541 -4.0119 -2.2356 21 6 2.9564 -2.0125 -3.4911 22 6 2.6270 -0.6721 -3.5533 23 6 2.1650 -0.0196 -2.4228 24 9 1.8432 1.2912 -2.4835 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.2491 -1.6318 1.1525 29 1 1.9779 -1.5509 3.8324 30 1 3.6493 -1.1203 3.3977 31 1 3.4113 1.4700 8.6843 32 1 2.2583 -2.5900 -0.2381 33 1 3.3171 -2.5213 -4.3728 34 1 2.7301 -0.1334 -4.4836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040090285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:24 Heat of formation + Delta-G solvation = -125.304144 kcal Electronic energy + Delta-G solvation = -21113.359030 eV Core-core repulsion = 17386.545059 eV Total energy + Delta-G solvation = -3726.813971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.069 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.02020 -49.96952 -41.16864 -39.81483 -36.70406 -34.58744 -33.21734 -31.58930 -30.73911 -29.72928 -27.66697 -25.39022 -24.15010 -22.53505 -21.55776 -19.99781 -18.91114 -18.42327 -18.36371 -17.53394 -17.03209 -16.98103 -16.87955 -16.49101 -16.39611 -15.86237 -15.57891 -15.40033 -15.02860 -14.75600 -14.48635 -14.37443 -14.02933 -13.66656 -13.54545 -13.26410 -13.16299 -12.91611 -12.84739 -12.60344 -12.50449 -11.98530 -11.70898 -11.16035 -11.03022 -10.42544 -10.27986 -10.17288 -9.60971 -8.67083 -8.34990 -6.13068 -0.17609 -0.07114 1.25149 1.41643 1.45948 1.54929 1.57554 2.12164 2.26689 2.28576 2.97849 2.99435 3.10260 3.29911 3.32243 3.55481 3.85729 3.93814 4.00544 4.11972 4.23959 4.29866 4.48699 4.51805 4.64198 4.74024 4.89221 4.91178 4.94918 5.01520 5.14824 5.37004 5.42315 5.68558 6.19990 6.37308 7.06597 7.14994 8.74440 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.023380 B = 0.003063 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.298134 B = 9138.873883 C =10004.534287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.185 3.815 3 H 0.080 0.920 4 N -0.711 5.711 5 C 0.538 3.462 6 O -0.559 6.559 7 C -0.130 4.130 8 S -0.149 6.149 9 C -0.546 4.546 10 H 0.084 0.916 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 0.999 3.001 14 H -0.256 1.256 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.100 4.100 18 C -0.126 4.126 19 C 0.089 3.911 20 F -0.138 7.138 21 C -0.115 4.115 22 C -0.110 4.110 23 C 0.084 3.916 24 F -0.140 7.140 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.414 0.586 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.271 0.729 32 H 0.155 0.845 33 H 0.176 0.824 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 -10.506 -25.604 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.080 3.920 3 H 0.098 0.902 4 N -0.367 5.367 5 C 0.324 3.676 6 O -0.436 6.436 7 C -0.282 4.282 8 S 0.078 5.922 9 C -0.694 4.694 10 H 0.102 0.898 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.821 3.179 14 H -0.180 1.180 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.102 4.102 18 C -0.145 4.145 19 C 0.069 3.931 20 F -0.116 7.116 21 C -0.134 4.134 22 C -0.128 4.128 23 C 0.064 3.936 24 F -0.119 7.119 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.253 0.747 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.080 0.920 32 H 0.173 0.827 33 H 0.193 0.807 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.384 -8.430 -25.403 26.871 hybrid contribution 0.694 -1.801 1.072 2.208 sum -1.690 -10.231 -24.331 26.448 Atomic orbital electron populations 1.22108 0.92670 1.03551 1.02761 1.19607 0.95326 0.96016 0.81010 0.90229 1.45925 1.68082 1.14569 1.08158 1.20083 0.76481 0.86584 0.84424 1.90703 1.50261 1.17601 1.85040 1.23378 1.05647 1.03322 0.95806 1.85596 1.86679 1.17215 1.02732 1.23241 1.50802 0.98520 0.96800 0.89833 1.26127 0.95081 0.97197 1.00759 1.70185 1.46866 1.15483 1.22249 0.84900 0.77805 0.78235 0.76962 1.17981 1.19979 1.19959 1.19648 1.02178 0.94345 0.94031 1.20842 1.00816 0.93372 0.99446 1.17737 1.01360 0.78751 0.95227 1.91534 1.90289 1.32749 1.97066 1.21351 1.00225 0.93942 0.97843 1.21284 0.98575 0.94601 0.98362 1.17700 1.02423 0.78536 0.94893 1.91521 1.90447 1.32955 1.96952 0.90318 0.93198 0.90207 0.74678 0.86878 0.87107 0.91992 0.82733 0.80672 0.80687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.47 71.98 0.68 -2.65 16 2 C 0.19 4.41 2.56 44.25 0.11 4.52 16 3 H 0.08 2.36 7.23 -2.39 -0.02 2.34 16 4 N -0.71 -18.03 5.00 -446.11 -2.23 -20.26 16 5 C 0.54 19.67 7.81 87.66 0.68 20.35 16 6 O -0.56 -25.71 15.53 -3.03 -0.05 -25.75 16 7 C -0.13 -5.09 6.16 71.23 0.44 -4.65 16 8 S -0.15 -8.26 20.57 -56.49 -1.16 -9.42 16 9 C -0.55 -31.02 9.50 67.95 0.65 -30.37 16 10 H 0.08 4.40 7.80 -2.92 -0.02 4.38 16 11 C 0.01 0.74 5.49 84.86 0.47 1.21 16 12 N -0.91 -55.94 13.22 21.65 0.29 -55.66 16 13 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 14 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 17 C -0.10 -1.84 5.06 -19.83 -0.10 -1.94 16 18 C -0.13 -1.91 9.21 22.31 0.21 -1.70 16 19 C 0.09 1.23 7.30 22.37 0.16 1.39 16 20 F -0.14 -2.16 17.27 44.97 0.78 -1.39 16 21 C -0.12 -1.14 10.02 22.31 0.22 -0.92 16 22 C -0.11 -1.20 10.02 22.31 0.22 -0.98 16 23 C 0.08 1.45 7.24 22.37 0.16 1.61 16 24 F -0.14 -2.91 16.56 44.97 0.74 -2.16 16 25 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.41 7.60 6.21 -92.71 -0.58 7.02 16 29 H 0.11 3.91 8.14 -2.40 -0.02 3.90 16 30 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.16 1.90 6.07 -2.91 -0.02 1.88 16 33 H 0.18 0.73 8.06 -2.91 -0.02 0.70 16 34 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -75.73 321.31 4.88 -70.85 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.57 Total: 12.40 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 3.91 Total: -14.12 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.94 Total: -75.91 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.05 Total: -25.75 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 1.52 Total: -3.55 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.42 kcal Total: -75.73 4.88 -70.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040090285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.453 kcal (2) G-P(sol) polarization free energy of solvation -75.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds