Wall clock time and date at job start Fri Apr 10 2020 14:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00049 * 2 1 4 4 C 1.50701 * 109.46964 * 269.99514 * 3 2 1 5 5 H 1.08001 * 120.00245 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99973 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00035 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99768 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47219 * 90.00392 * 8 6 4 10 10 H 1.48509 * 109.46991 * 210.00405 * 8 6 4 11 11 H 1.48503 * 109.47445 * 330.00102 * 8 6 4 12 12 C 1.34784 * 120.00193 * 179.97438 * 2 1 3 13 13 O 1.21599 * 119.99904 * 184.32769 * 12 2 1 14 14 C 1.47475 * 119.99840 * 4.33608 * 12 2 1 15 15 C 1.39831 * 120.06343 * 147.78653 * 14 12 2 16 16 C 1.37093 * 119.93584 * 180.02562 * 15 14 12 17 17 C 1.39301 * 120.06324 * 0.02562 * 16 15 14 18 18 S 1.76196 * 119.93525 * 179.97438 * 17 16 15 19 19 C 1.81403 * 103.00144 * 179.97438 * 18 17 16 20 20 F 1.39893 * 109.47379 * 300.00448 * 19 18 17 21 21 F 1.39904 * 109.46530 * 60.00064 * 19 18 17 22 22 C 1.39297 * 120.12921 * 0.24789 * 17 16 15 23 23 C 1.37094 * 120.06059 * 359.45162 * 22 17 16 24 24 H 1.09000 * 109.47397 * 274.76909 * 1 2 3 25 25 H 1.08998 * 109.47025 * 34.77437 * 1 2 3 26 26 H 1.08996 * 109.46604 * 154.77146 * 1 2 3 27 27 H 1.09002 * 109.47331 * 29.99551 * 3 2 1 28 28 H 1.09005 * 109.47437 * 149.99595 * 3 2 1 29 29 H 0.97003 * 119.99879 * 179.97438 * 7 6 4 30 30 H 1.08000 * 120.03460 * 0.02562 * 15 14 12 31 31 H 1.08004 * 119.96974 * 179.97438 * 16 15 14 32 32 H 1.08999 * 109.47527 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.97337 * 179.70532 * 22 17 16 34 34 H 1.08002 * 120.02827 * 180.26820 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4369 3.4173 -3.4340 9 1 2.3066 4.2600 -3.9004 10 1 4.6971 4.2006 -3.4968 11 1 3.5543 2.2203 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3523 -1.1686 0.0800 14 6 1.4047 -2.4426 -0.0955 15 6 1.9837 -3.5370 -0.7454 16 6 1.2986 -4.7212 -0.8336 17 6 0.0267 -4.8347 -0.2769 18 16 -0.8510 -6.3581 -0.3928 19 6 -2.4092 -5.9974 0.4630 20 9 -2.1406 -5.6309 1.7861 21 9 -3.0662 -4.9474 -0.1875 22 6 -0.5549 -3.7445 0.3662 23 6 0.1280 -2.5597 0.4627 24 1 -0.3634 0.0854 1.0241 25 1 -0.3633 0.8441 -0.5861 26 1 -0.3632 -0.9296 -0.4380 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5139 29 1 4.0302 4.4440 -0.8505 30 1 2.9696 -3.4495 -1.1776 31 1 1.7451 -5.5667 -1.3358 32 1 -3.0432 -6.8840 0.4528 33 1 -1.5430 -3.8339 0.7927 34 1 -0.3217 -1.7161 0.9653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058293580.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:05 Heat of formation + Delta-G solvation = -77.213628 kcal Electronic energy + Delta-G solvation = -21630.754495 eV Core-core repulsion = 17906.025885 eV Total energy + Delta-G solvation = -3724.728610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.069 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.73444 -47.72371 -40.03327 -37.92071 -35.03738 -32.81966 -31.29403 -31.27337 -27.77207 -27.46387 -26.23941 -24.14549 -22.84861 -22.17952 -19.39942 -18.94088 -18.27822 -17.91754 -16.98645 -16.75545 -16.55116 -15.79595 -14.91062 -14.68259 -14.62388 -14.55082 -14.27787 -14.04527 -14.01012 -13.72505 -13.19169 -13.12356 -12.66760 -12.44275 -12.16699 -12.01390 -11.38005 -11.25209 -11.15974 -10.93007 -10.70123 -10.60673 -10.18729 -10.05561 -9.65741 -9.14339 -9.04958 -8.45890 -8.00878 -7.70333 -6.06756 -4.11989 0.32807 0.73261 1.26947 1.44565 3.13616 3.25489 3.29257 3.35886 3.40279 3.73530 3.83825 3.91659 4.02945 4.42802 4.63776 4.70464 4.94837 5.19271 5.27515 5.30411 5.45927 5.62885 5.79070 5.85777 6.00989 6.10138 6.18510 6.35273 6.66320 7.01707 7.39933 7.47008 7.89234 8.19364 8.31099 8.83923 8.99547 9.53187 11.01362 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.028039 B = 0.003284 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.384097 B = 8524.078277 C = 8690.854722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.591 5.591 3 C 0.244 3.756 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.544 3.456 13 O -0.535 6.535 14 C -0.108 4.108 15 C -0.051 4.051 16 C -0.097 4.097 17 C -0.085 4.085 18 S -0.099 6.099 19 C 0.272 3.728 20 F -0.179 7.179 21 F -0.179 7.179 22 C -0.131 4.131 23 C -0.084 4.084 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.047 0.953 29 H 0.264 0.736 30 H 0.142 0.858 31 H 0.134 0.866 32 H 0.156 0.844 33 H 0.130 0.870 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.223 -20.302 2.315 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.322 5.322 3 C 0.125 3.875 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.331 3.669 13 O -0.413 6.413 14 C -0.113 4.113 15 C -0.071 4.071 16 C -0.120 4.120 17 C -0.198 4.198 18 S 0.138 5.862 19 C 0.109 3.891 20 F -0.161 7.161 21 F -0.161 7.161 22 C -0.153 4.153 23 C -0.104 4.104 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.152 0.848 32 H 0.173 0.827 33 H 0.147 0.853 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.286 -21.144 1.944 25.047 hybrid contribution -0.319 1.686 -0.379 1.757 sum -13.605 -19.458 1.565 23.794 Atomic orbital electron populations 1.22287 0.81737 1.03320 1.00590 1.48073 1.06191 1.07681 1.70248 1.19363 0.92709 0.77704 0.97716 1.21429 1.36772 1.06439 0.92186 0.92374 1.24937 0.95259 0.96324 0.97535 1.69934 1.38252 1.14304 1.30774 0.86478 0.77710 0.78619 0.84519 1.20597 1.21025 1.19853 1.18053 0.87239 0.83308 0.78342 1.90771 1.13328 1.87025 1.50192 1.20429 0.94979 0.95574 1.00304 1.21074 0.99709 0.90645 0.95715 1.20528 0.92542 0.98455 1.00478 1.21645 0.98402 0.95618 1.04113 1.86233 1.12882 1.16127 1.70911 1.24302 0.95606 0.91518 0.77675 1.93128 1.94217 1.93015 1.35744 1.93130 1.81958 1.60413 1.80569 1.21154 1.00709 0.92650 1.00836 1.21747 0.93298 0.97580 0.97763 0.93105 0.90760 0.90717 0.94727 0.93469 0.92646 0.84023 0.84829 0.82686 0.85280 0.83190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 8.80 59.85 0.53 1.56 16 2 N -0.59 -12.79 2.86 -184.21 -0.53 -13.32 16 3 C 0.24 6.42 5.22 -5.19 -0.03 6.40 16 4 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.54 11.80 7.42 -12.49 -0.09 11.71 16 13 O -0.53 -13.77 16.31 5.28 0.09 -13.69 16 14 C -0.11 -1.82 5.47 -104.94 -0.57 -2.39 16 15 C -0.05 -0.77 9.57 -39.40 -0.38 -1.14 16 16 C -0.10 -1.21 9.75 -39.60 -0.39 -1.59 16 17 C -0.09 -1.03 6.12 -38.79 -0.24 -1.27 16 18 S -0.10 -0.89 22.16 -107.50 -2.38 -3.27 16 19 C 0.27 1.93 5.37 101.05 0.54 2.47 16 20 F -0.18 -1.61 15.65 2.25 0.04 -1.57 16 21 F -0.18 -1.60 15.61 2.25 0.04 -1.57 16 22 C -0.13 -1.63 8.64 -39.60 -0.34 -1.97 16 23 C -0.08 -1.17 7.39 -39.40 -0.29 -1.46 16 24 H 0.05 0.69 7.44 -51.93 -0.39 0.30 16 25 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 26 H 0.07 1.06 4.71 -51.93 -0.24 0.81 16 27 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 28 H 0.05 1.40 7.37 -51.93 -0.38 1.01 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.14 2.13 7.95 -52.49 -0.42 1.71 16 31 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 32 H 0.16 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.13 1.45 4.53 -52.49 -0.24 1.21 16 34 H 0.15 1.88 4.82 -52.49 -0.25 1.63 16 LS Contribution 310.66 15.07 4.68 4.68 Total: -1.00 -33.67 310.66 -7.19 -40.86 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -3.15 Total: -1.70 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.68 Total: -1.44 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.21 Total: -39.15 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.69 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.07 Total: -3.14 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.38 Total: -3.27 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.67 -7.19 -40.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058293580.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.357 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds