Wall clock time and date at job start Fri Apr 10 2020 14:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99941 * 2 1 4 4 O 1.20822 * 120.00356 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99926 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47046 * 180.02562 * 5 3 2 7 7 C 1.36942 * 119.99899 * 94.80232 * 6 5 3 8 8 H 1.08000 * 119.99925 * 217.45995 * 7 6 5 9 9 C 1.38813 * 119.99657 * 37.17977 * 7 6 5 10 10 N 1.31628 * 119.99800 * 213.29205 * 9 7 6 11 11 Si 1.86795 * 120.00251 * 33.29023 * 9 7 6 12 12 H 1.48502 * 109.46930 * 84.88379 * 11 9 7 13 13 H 1.48500 * 109.47345 * 204.88269 * 11 9 7 14 14 H 1.48502 * 109.47402 * 324.88248 * 11 9 7 15 15 C 1.46498 * 120.00082 * 274.79818 * 6 5 3 16 16 C 1.50698 * 109.47272 * 264.77513 * 15 6 5 17 17 C 1.38240 * 120.01258 * 260.24708 * 16 15 6 18 18 C 1.38221 * 120.04920 * 179.76891 * 17 16 15 19 19 C 1.38255 * 120.05986 * 0.50457 * 18 17 16 20 20 C 1.38274 * 120.01714 * 359.74906 * 19 18 17 21 21 Cl 1.73599 * 120.02867 * 179.97438 * 20 19 18 22 22 C 1.38403 * 120.00425 * 80.52086 * 16 15 6 23 23 F 1.35105 * 120.02781 * 0.02562 * 22 16 15 24 24 H 1.08998 * 109.47293 * 299.99743 * 1 2 3 25 25 H 1.09004 * 109.47057 * 59.99842 * 1 2 3 26 26 H 1.08998 * 109.47379 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46875 * 60.00611 * 5 3 2 28 28 H 1.09001 * 109.47310 * 300.00480 * 5 3 2 29 29 H 0.96998 * 120.00127 * 180.02562 * 10 9 7 30 30 H 1.08998 * 109.47201 * 24.77911 * 15 6 5 31 31 H 1.09007 * 109.46603 * 144.78004 * 15 6 5 32 32 H 1.07998 * 119.97253 * 359.97438 * 17 16 15 33 33 H 1.08003 * 119.96790 * 180.25098 * 18 17 16 34 34 H 1.08005 * 119.98677 * 179.76408 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.2706 3.3078 1.1831 8 1 3.9935 4.3417 1.3270 9 6 4.9143 2.6140 2.1985 10 7 4.6424 2.8869 3.4572 11 14 6.1665 1.2929 1.7788 12 1 7.4936 1.9213 1.5574 13 1 6.2586 0.3239 2.9003 14 1 5.7427 0.5832 0.5451 15 6 4.0881 3.4125 -1.2630 16 6 5.5136 3.3700 -1.7498 17 6 6.3482 4.4521 -1.5410 18 6 7.6572 4.4120 -1.9830 19 6 8.1310 3.2940 -2.6440 20 6 7.2970 2.2122 -2.8589 21 17 7.8915 0.8084 -3.6894 22 6 5.9859 2.2498 -2.4113 23 9 5.1693 1.1941 -2.6212 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.9564 0.7806 -0.8892 28 1 3.9557 0.7808 0.8908 29 1 5.0925 2.4023 4.1667 30 1 3.4365 2.9523 -2.0057 31 1 3.7877 4.4489 -1.1084 32 1 5.9780 5.3281 -1.0291 33 1 8.3092 5.2566 -1.8155 34 1 9.1530 3.2654 -2.9922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093562570.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:34 Heat of formation + Delta-G solvation = -96.764595 kcal Electronic energy + Delta-G solvation = -22873.371367 eV Core-core repulsion = 19133.378468 eV Total energy + Delta-G solvation = -3739.992899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.067 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -49.98602 -41.29066 -40.13598 -38.10053 -37.49527 -36.84721 -34.12786 -32.61552 -31.32373 -30.02124 -27.90557 -27.70703 -24.33813 -23.73995 -22.61498 -21.74895 -19.17519 -18.76279 -18.58513 -17.82995 -17.51418 -17.27604 -16.92484 -16.89015 -16.65502 -15.77223 -15.37977 -15.00823 -14.98297 -14.50360 -14.41068 -14.21028 -14.11297 -13.94778 -13.29068 -13.03597 -12.85238 -12.83342 -12.48951 -12.40907 -12.27154 -12.22825 -11.93991 -11.73042 -11.70335 -11.33625 -10.68106 -9.80627 -9.64088 -9.05671 -8.35038 -5.64986 0.04910 0.13899 0.98468 1.27811 1.34856 1.42565 1.46658 1.86958 2.35024 2.50444 2.89128 3.14136 3.34798 3.71701 3.90483 4.10038 4.18979 4.26039 4.27042 4.34782 4.35980 4.39785 4.47234 4.68126 4.73885 4.87454 4.99492 5.06336 5.29181 5.45134 5.47329 5.77652 5.80752 6.13170 6.68891 6.96982 7.45509 7.88003 8.83599 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.006662 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.644755 B = 4202.039067 C = 4968.981515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.376 6.376 3 C 0.431 3.569 4 O -0.527 6.527 5 C 0.145 3.855 6 N -0.571 5.571 7 C -0.269 4.269 8 H 0.049 0.951 9 C 0.010 3.990 10 N -0.915 5.915 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.294 1.294 14 H -0.243 1.243 15 C 0.186 3.814 16 C -0.122 4.122 17 C -0.076 4.076 18 C -0.109 4.109 19 C -0.090 4.090 20 C -0.088 4.088 21 Cl -0.058 7.058 22 C 0.088 3.912 23 F -0.138 7.138 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.134 0.866 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.268 0.732 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.146 0.854 33 H 0.172 0.828 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 -2.427 -13.695 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C 0.272 3.728 4 O -0.415 6.415 5 C 0.016 3.984 6 N -0.290 5.290 7 C -0.398 4.398 8 H 0.067 0.933 9 C -0.190 4.190 10 N -0.555 5.555 11 Si 0.720 3.280 12 H -0.208 1.208 13 H -0.221 1.221 14 H -0.167 1.167 15 C 0.061 3.939 16 C -0.126 4.126 17 C -0.095 4.095 18 C -0.127 4.127 19 C -0.109 4.109 20 C -0.116 4.116 21 Cl -0.029 7.029 22 C 0.068 3.932 23 F -0.117 7.117 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.152 0.848 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.164 0.836 33 H 0.190 0.810 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.413 -2.315 -13.587 14.473 hybrid contribution 0.031 -0.872 0.411 0.965 sum 4.444 -3.187 -13.176 14.266 Atomic orbital electron populations 1.23457 0.75893 1.05341 1.01910 1.86561 1.24552 1.33882 1.84214 1.26257 0.94291 0.81127 0.71088 1.90542 1.67484 1.37474 1.45975 1.21418 0.85074 0.88258 1.03654 1.43795 1.73778 1.08503 1.02933 1.18469 1.33366 0.97617 0.90309 0.93301 1.25879 0.98996 0.99772 0.94402 1.70146 1.40685 1.44506 1.00175 0.86657 0.82231 0.80269 0.78844 1.20771 1.22080 1.16668 1.19959 0.89629 0.98077 0.86220 1.20894 1.00658 0.93275 0.97757 1.21348 0.93702 0.97911 0.96533 1.21569 0.95420 0.98915 0.96811 1.21283 1.00447 0.90786 0.98349 1.21154 0.93163 0.92680 1.04567 1.98353 1.87759 1.40132 1.76695 1.17509 0.87835 0.85709 1.02191 1.91414 1.72128 1.55153 1.93012 0.93178 0.92048 0.84836 0.87654 0.89691 0.92315 0.91868 0.90779 0.83595 0.81033 0.81402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.38 -13.85 10.57 -51.38 -0.54 -14.39 16 3 C 0.43 18.78 8.02 71.24 0.57 19.35 16 4 O -0.53 -25.62 16.17 21.98 0.36 -25.27 16 5 C 0.14 6.35 4.46 85.64 0.38 6.73 16 6 N -0.57 -26.35 1.54 -710.69 -1.09 -27.44 16 7 C -0.27 -14.51 9.78 84.03 0.82 -13.68 16 8 H 0.05 2.92 8.06 -2.91 -0.02 2.89 16 9 C 0.01 0.54 5.01 84.86 0.43 0.97 16 10 N -0.91 -54.52 13.97 21.65 0.30 -54.22 16 11 Si 0.89 42.59 26.53 68.60 1.82 44.41 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 14 H -0.24 -10.79 5.56 99.48 0.55 -10.24 16 15 C 0.19 7.16 5.54 85.63 0.47 7.63 16 16 C -0.12 -4.18 5.43 -19.83 -0.11 -4.28 16 17 C -0.08 -2.19 9.67 22.27 0.22 -1.98 16 18 C -0.11 -2.48 10.04 22.27 0.22 -2.25 16 19 C -0.09 -2.09 9.83 22.28 0.22 -1.87 16 20 C -0.09 -2.55 6.33 22.36 0.14 -2.41 16 21 Cl -0.06 -1.54 28.62 -2.72 -0.08 -1.62 16 22 C 0.09 2.97 7.22 22.39 0.16 3.13 16 23 F -0.14 -4.91 14.14 44.97 0.64 -4.27 16 24 H 0.05 1.47 8.13 -2.39 -0.02 1.45 16 25 H 0.06 1.63 8.13 -2.38 -0.02 1.61 16 26 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.11 4.20 5.92 -2.39 -0.01 4.18 16 28 H 0.09 3.95 4.46 -2.39 -0.01 3.93 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.31 16 30 H 0.06 2.33 7.82 -2.39 -0.02 2.31 16 31 H 0.07 2.79 7.95 -2.38 -0.02 2.78 16 32 H 0.15 3.93 8.04 -2.91 -0.02 3.91 16 33 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -67.67 314.29 7.11 -60.56 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.98 Total: 8.94 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 4.73 Total: 13.30 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -0.79 Total: -81.66 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.19 Total: -39.65 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.64 Total: -4.27 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.82 Total: 44.41 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -67.67 7.11 -60.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093562570.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.205 kcal (2) G-P(sol) polarization free energy of solvation -67.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds