Wall clock time and date at job start Fri Apr 10 2020 14:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 120.00364 * 2 1 4 4 H 1.48502 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47125 * 299.99746 * 3 2 1 6 6 H 1.48504 * 109.47007 * 59.99763 * 3 2 1 7 7 C 1.38951 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00357 * 197.89472 * 7 2 1 9 9 N 1.37104 * 120.00075 * 17.88638 * 7 2 1 10 10 C 1.34781 * 119.99594 * 41.78579 * 9 7 2 11 11 O 1.21287 * 120.00057 * 5.51772 * 10 9 7 12 12 C 1.50696 * 119.99854 * 185.51107 * 10 9 7 13 13 H 1.09000 * 109.64233 * 45.05307 * 12 10 9 14 14 C 1.53882 * 109.64618 * 284.75580 * 12 10 9 15 15 C 1.55046 * 106.62340 * 192.96724 * 14 12 10 16 16 S 1.83559 * 102.55577 * 42.48561 * 15 14 12 17 17 O 1.42102 * 109.37341 * 223.35568 * 16 15 14 18 18 O 1.42103 * 109.40868 * 90.09014 * 16 15 14 19 19 C 1.54164 * 109.64730 * 165.48276 * 12 10 9 20 20 C 1.46492 * 119.99988 * 221.79250 * 9 7 2 21 21 C 1.54266 * 110.03849 * 61.68838 * 20 9 7 22 22 C 1.54887 * 104.19588 * 217.10414 * 21 20 9 23 23 C 1.54889 * 102.74857 * 37.94183 * 22 21 20 24 24 C 1.53879 * 110.03371 * 304.51756 * 20 9 7 25 25 H 0.97006 * 119.99302 * 4.93872 * 1 2 3 26 26 H 1.09004 * 110.02925 * 312.25781 * 14 12 10 27 27 H 1.08999 * 110.02643 * 73.62906 * 14 12 10 28 28 H 1.08995 * 110.78967 * 160.70418 * 15 14 12 29 29 H 1.09004 * 110.78838 * 283.97590 * 15 14 12 30 30 H 1.08997 * 110.31746 * 266.66763 * 19 12 10 31 31 H 1.09001 * 110.31613 * 28.75393 * 19 12 10 32 32 H 1.09004 * 110.01300 * 183.12897 * 20 9 7 33 33 H 1.09004 * 110.48438 * 335.78486 * 21 20 9 34 34 H 1.08999 * 110.48692 * 98.42020 * 21 20 9 35 35 H 1.08996 * 110.75777 * 279.62489 * 22 21 20 36 36 H 1.09003 * 110.75183 * 156.25246 * 22 21 20 37 37 H 1.08998 * 110.48188 * 203.37637 * 23 22 21 38 38 H 1.09003 * 110.48625 * 80.73526 * 23 22 21 39 39 H 1.09002 * 110.03015 * 238.57285 * 24 20 9 40 40 H 1.08994 * 110.02727 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0496 -1.2259 0.2879 9 7 1.3730 -2.3622 -0.3636 10 6 0.5318 -2.3669 -1.4167 11 8 0.4134 -1.3738 -2.1028 12 6 -0.2614 -3.6063 -1.7418 13 1 -0.6906 -4.0169 -0.8278 14 6 0.6587 -4.6533 -2.3939 15 6 -0.2658 -5.7430 -2.9953 16 16 -1.6063 -4.7506 -3.7618 17 8 -2.8619 -5.3474 -3.4674 18 8 -1.2611 -4.4500 -5.1071 19 6 -1.3897 -3.2547 -2.7317 20 6 1.6078 -3.5950 0.3920 21 6 1.1525 -3.4133 1.8547 22 6 2.2016 -4.1996 2.6795 23 6 3.5212 -3.9049 1.9238 24 6 3.1138 -3.9077 0.4359 25 1 -0.4849 0.8370 -0.0723 26 1 1.2514 -4.1898 -3.1826 27 1 1.3153 -5.0926 -1.6429 28 1 0.2629 -6.3257 -3.7495 29 1 -0.6588 -6.3920 -2.2126 30 1 -2.3099 -3.0299 -2.1925 31 1 -1.0985 -2.4069 -3.3519 32 1 1.0678 -4.4229 -0.0677 33 1 1.1637 -2.3586 2.1295 34 1 0.1583 -3.8358 2.0001 35 1 1.9805 -5.2668 2.6689 36 1 2.2497 -3.8240 3.7016 37 1 4.2555 -4.6861 2.1197 38 1 3.9149 -2.9295 2.2098 39 1 3.3046 -4.8876 -0.0016 40 1 3.6700 -3.1418 -0.1045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078209324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:18:18 Heat of formation + Delta-G solvation = -100.127227 kcal Electronic energy + Delta-G solvation = -24179.957916 eV Core-core repulsion = 20701.156308 eV Total energy + Delta-G solvation = -3478.801608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -39.39818 -37.14851 -36.85547 -35.88293 -35.28590 -33.41952 -31.54367 -29.73131 -28.17214 -27.01349 -26.18092 -24.15459 -21.91595 -20.19698 -19.85275 -19.16845 -18.64050 -17.25878 -16.64132 -16.09180 -15.69358 -15.46547 -15.08755 -14.63891 -14.37818 -14.03605 -13.81408 -13.63158 -13.19213 -12.93753 -12.72312 -12.12135 -12.00718 -11.92384 -11.85957 -11.77814 -11.36901 -11.21366 -10.95825 -10.91078 -10.73220 -10.70629 -10.60177 -10.56483 -10.38956 -10.25510 -10.15434 -10.11061 -9.79059 -8.81779 -8.21210 -7.21174 -6.18027 -3.92726 0.22378 2.66942 3.26521 3.36230 3.37990 3.71200 3.98362 4.12117 4.28343 4.51644 4.68510 4.87907 4.93606 5.06931 5.07239 5.14336 5.17371 5.40343 5.41223 5.55930 5.65968 5.73753 5.88841 5.90860 5.97348 6.07057 6.12588 6.18142 6.20608 6.31850 6.34417 6.37655 6.51638 6.71437 6.85792 7.09263 7.57969 8.18952 8.98047 9.08126 9.58170 10.17641 10.89881 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.006186 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.312561 B = 4525.426584 C = 5802.400118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.287 1.287 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.444 5.444 10 C 0.489 3.511 11 O -0.530 6.530 12 C -0.102 4.102 13 H 0.098 0.902 14 C -0.114 4.114 15 C -0.585 4.585 16 S 2.377 3.623 17 O -0.949 6.949 18 O -0.942 6.942 19 C -0.561 4.561 20 C 0.121 3.879 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.132 4.132 25 H 0.264 0.736 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.155 0.845 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.100 -11.570 1.311 11.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.213 1.213 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.165 5.165 10 C 0.275 3.725 11 O -0.408 6.408 12 C -0.126 4.126 13 H 0.116 0.884 14 C -0.153 4.153 15 C -0.715 4.715 16 S 2.562 3.438 17 O -0.947 6.947 18 O -0.939 6.939 19 C -0.692 4.692 20 C 0.016 3.984 21 C -0.167 4.167 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.170 4.170 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.121 0.879 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.173 0.827 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.218 -11.147 0.254 11.216 hybrid contribution 0.774 0.962 0.792 1.467 sum 1.992 -10.185 1.046 10.431 Atomic orbital electron populations 1.69853 1.06412 1.27691 1.42858 1.25153 0.94775 0.99310 0.94776 0.86269 0.79924 0.83155 0.77454 1.19612 1.20736 1.21327 1.18909 0.94224 0.84121 1.48937 0.90171 1.43321 1.41892 1.07395 1.23912 1.19249 0.83696 0.87566 0.82035 1.90505 1.65782 1.34560 1.49956 1.21681 0.94613 0.97626 0.98639 0.88380 1.22351 0.97942 0.92665 1.02333 1.30623 1.17272 1.10537 1.13063 1.09333 0.77115 0.80008 0.77317 1.93578 1.39232 1.75728 1.86117 1.93601 1.84679 1.83725 1.31907 1.30346 1.06928 1.19204 1.12725 1.21897 0.94794 0.88955 0.92750 1.22687 0.96869 1.02409 0.94686 1.22444 0.95845 0.99205 0.98604 1.22263 0.96827 1.01021 0.95423 1.22459 0.97135 1.00742 0.96674 0.92603 0.89000 0.87949 0.84749 0.84623 0.84559 0.82726 0.90971 0.89117 0.92923 0.92445 0.92283 0.92824 0.91534 0.92830 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.30 11.66 55.50 0.65 -22.65 16 2 C 0.07 1.85 4.40 -17.47 -0.08 1.77 16 3 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.34 -8.39 7.53 -14.93 -0.11 -8.51 16 8 H 0.08 1.96 6.94 -52.49 -0.36 1.60 16 9 N -0.44 -9.84 2.48 -106.54 -0.26 -10.10 16 10 C 0.49 11.09 6.06 -10.99 -0.07 11.02 16 11 O -0.53 -14.38 13.28 5.55 0.07 -14.31 16 12 C -0.10 -1.69 2.06 -90.71 -0.19 -1.88 16 13 H 0.10 1.46 7.30 -51.93 -0.38 1.08 16 14 C -0.11 -1.47 5.40 -25.19 -0.14 -1.61 16 15 C -0.59 -5.96 7.32 38.24 0.28 -5.68 16 16 S 2.38 32.31 6.12 -107.50 -0.66 31.65 16 17 O -0.95 -15.23 18.15 -57.71 -1.05 -16.27 16 18 O -0.94 -15.96 18.15 -57.71 -1.05 -17.01 16 19 C -0.56 -8.84 6.60 37.77 0.25 -8.59 16 20 C 0.12 2.08 2.68 -66.81 -0.18 1.90 16 21 C -0.13 -2.16 6.42 -25.07 -0.16 -2.32 16 22 C -0.12 -1.67 6.91 -24.74 -0.17 -1.84 16 23 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 24 C -0.13 -2.01 6.18 -25.61 -0.16 -2.17 16 25 H 0.26 7.20 8.32 -40.82 -0.34 6.86 16 26 H 0.09 1.23 8.11 -51.93 -0.42 0.81 16 27 H 0.10 1.17 6.14 -51.93 -0.32 0.85 16 28 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.14 2.01 8.14 -51.93 -0.42 1.58 16 31 H 0.15 2.78 6.84 -51.93 -0.36 2.43 16 32 H 0.07 1.06 4.13 -51.93 -0.21 0.85 16 33 H 0.09 1.87 7.19 -51.93 -0.37 1.49 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.37 6.71 -51.93 -0.35 1.02 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -34.77 324.06 -9.05 -43.82 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.71 Total: 3.63 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -0.89 Total: -19.69 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.38 Total: -32.75 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -2.02 Total: -47.59 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Atomic # 16 Polarization: 32.31 SS G_CDS: -0.66 Total: 31.65 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.77 -9.05 -43.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078209324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.311 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds