Wall clock time and date at job start Fri Apr 10 2020 14:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 120.00364 * 2 1 4 4 H 1.48502 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47125 * 299.99746 * 3 2 1 6 6 H 1.48504 * 109.47007 * 59.99763 * 3 2 1 7 7 C 1.38951 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00357 * 197.89472 * 7 2 1 9 9 N 1.37104 * 120.00075 * 17.88638 * 7 2 1 10 10 C 1.34781 * 119.99594 * 41.78579 * 9 7 2 11 11 O 1.21287 * 120.00057 * 5.51772 * 10 9 7 12 12 C 1.50696 * 119.99854 * 185.51107 * 10 9 7 13 13 H 1.09000 * 109.64233 * 45.05307 * 12 10 9 14 14 C 1.53882 * 109.64618 * 284.75580 * 12 10 9 15 15 C 1.55046 * 106.62340 * 192.96724 * 14 12 10 16 16 S 1.83559 * 102.55577 * 42.48561 * 15 14 12 17 17 O 1.42102 * 109.37341 * 223.35568 * 16 15 14 18 18 O 1.42103 * 109.40868 * 90.09014 * 16 15 14 19 19 C 1.54164 * 109.64730 * 165.48276 * 12 10 9 20 20 C 1.46492 * 119.99988 * 221.79250 * 9 7 2 21 21 C 1.54266 * 110.03849 * 61.68838 * 20 9 7 22 22 C 1.54887 * 104.19588 * 217.10414 * 21 20 9 23 23 C 1.54889 * 102.74857 * 37.94183 * 22 21 20 24 24 C 1.53879 * 110.03371 * 304.51756 * 20 9 7 25 25 H 0.97006 * 119.99302 * 4.93872 * 1 2 3 26 26 H 1.09004 * 110.02925 * 312.25781 * 14 12 10 27 27 H 1.08999 * 110.02643 * 73.62906 * 14 12 10 28 28 H 1.08995 * 110.78967 * 160.70418 * 15 14 12 29 29 H 1.09004 * 110.78838 * 283.97590 * 15 14 12 30 30 H 1.08997 * 110.31746 * 266.66763 * 19 12 10 31 31 H 1.09001 * 110.31613 * 28.75393 * 19 12 10 32 32 H 1.09004 * 110.01300 * 183.12897 * 20 9 7 33 33 H 1.09004 * 110.48438 * 335.78486 * 21 20 9 34 34 H 1.08999 * 110.48692 * 98.42020 * 21 20 9 35 35 H 1.08996 * 110.75777 * 279.62489 * 22 21 20 36 36 H 1.09003 * 110.75183 * 156.25246 * 22 21 20 37 37 H 1.08998 * 110.48188 * 203.37637 * 23 22 21 38 38 H 1.09003 * 110.48625 * 80.73526 * 23 22 21 39 39 H 1.09002 * 110.03015 * 238.57285 * 24 20 9 40 40 H 1.08994 * 110.02727 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0496 -1.2259 0.2879 9 7 1.3730 -2.3622 -0.3636 10 6 0.5318 -2.3669 -1.4167 11 8 0.4134 -1.3738 -2.1028 12 6 -0.2614 -3.6063 -1.7418 13 1 -0.6906 -4.0169 -0.8278 14 6 0.6587 -4.6533 -2.3939 15 6 -0.2658 -5.7430 -2.9953 16 16 -1.6063 -4.7506 -3.7618 17 8 -2.8619 -5.3474 -3.4674 18 8 -1.2611 -4.4500 -5.1071 19 6 -1.3897 -3.2547 -2.7317 20 6 1.6078 -3.5950 0.3920 21 6 1.1525 -3.4133 1.8547 22 6 2.2016 -4.1996 2.6795 23 6 3.5212 -3.9049 1.9238 24 6 3.1138 -3.9077 0.4359 25 1 -0.4849 0.8370 -0.0723 26 1 1.2514 -4.1898 -3.1826 27 1 1.3153 -5.0926 -1.6429 28 1 0.2629 -6.3257 -3.7495 29 1 -0.6588 -6.3920 -2.2126 30 1 -2.3099 -3.0299 -2.1925 31 1 -1.0985 -2.4069 -3.3519 32 1 1.0678 -4.4229 -0.0677 33 1 1.1637 -2.3586 2.1295 34 1 0.1583 -3.8358 2.0001 35 1 1.9805 -5.2668 2.6689 36 1 2.2497 -3.8240 3.7016 37 1 4.2555 -4.6861 2.1197 38 1 3.9149 -2.9295 2.2098 39 1 3.3046 -4.8876 -0.0016 40 1 3.6700 -3.1418 -0.1045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078209324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:18:17 Heat of formation + Delta-G solvation = -125.747609 kcal Electronic energy + Delta-G solvation = -24181.068899 eV Core-core repulsion = 20701.156308 eV Total energy + Delta-G solvation = -3479.912591 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.94221 -38.50449 -38.06956 -37.11631 -36.64084 -35.13826 -33.35823 -30.86245 -29.38912 -28.47535 -27.62747 -25.67227 -23.21186 -21.35799 -21.24432 -20.75672 -19.77883 -18.69500 -17.87064 -17.62532 -17.09126 -16.67518 -16.57729 -16.13745 -15.78759 -15.39613 -15.25104 -14.89791 -14.54782 -14.36388 -14.03631 -13.47727 -13.29389 -13.21250 -13.13855 -12.95122 -12.92756 -12.85510 -12.59075 -12.38585 -12.28212 -12.08268 -11.93193 -11.77653 -11.73586 -11.68546 -11.34781 -11.29346 -11.07184 -10.72519 -10.00769 -9.05496 -8.17674 -5.91805 -0.87164 1.34724 1.41920 1.48479 1.59029 2.27290 2.44917 2.64817 2.98728 3.21905 3.28187 3.42342 3.73445 3.78509 3.91827 3.92611 4.04836 4.09581 4.26783 4.43094 4.60562 4.65368 4.72230 4.76301 4.86772 4.87918 4.90439 5.00140 5.05543 5.12542 5.18961 5.23511 5.35909 5.47179 5.62275 5.62993 5.73296 6.25228 7.08316 7.26797 7.76546 8.39946 8.89246 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.006186 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.312561 B = 4525.426584 C = 5802.400118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.019 3.981 3 Si 0.953 3.047 4 H -0.258 1.258 5 H -0.299 1.299 6 H -0.281 1.281 7 C -0.331 4.331 8 H 0.080 0.920 9 N -0.457 5.457 10 C 0.474 3.526 11 O -0.590 6.590 12 C -0.100 4.100 13 H 0.121 0.879 14 C -0.116 4.116 15 C -0.542 4.542 16 S 2.398 3.602 17 O -0.972 6.972 18 O -0.979 6.979 19 C -0.577 4.577 20 C 0.112 3.888 21 C -0.131 4.131 22 C -0.111 4.111 23 C -0.116 4.116 24 C -0.129 4.129 25 H 0.254 0.746 26 H 0.083 0.917 27 H 0.131 0.869 28 H 0.171 0.829 29 H 0.177 0.823 30 H 0.135 0.865 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.513 -15.863 2.217 16.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.227 1.227 6 H -0.207 1.207 7 C -0.459 4.459 8 H 0.098 0.902 9 N -0.177 5.177 10 C 0.262 3.738 11 O -0.471 6.471 12 C -0.123 4.123 13 H 0.139 0.861 14 C -0.154 4.154 15 C -0.675 4.675 16 S 2.585 3.415 17 O -0.969 6.969 18 O -0.977 6.977 19 C -0.706 4.706 20 C 0.008 3.992 21 C -0.170 4.170 22 C -0.149 4.149 23 C -0.154 4.154 24 C -0.167 4.167 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.149 0.851 28 H 0.189 0.811 29 H 0.195 0.805 30 H 0.153 0.847 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.636 -15.425 1.191 15.694 hybrid contribution 0.397 2.223 0.523 2.318 sum 3.033 -13.202 1.713 13.654 Atomic orbital electron populations 1.69953 1.07569 1.27363 1.45802 1.25845 0.95354 1.02079 0.95378 0.85517 0.79678 0.80260 0.76638 1.18134 1.22660 1.20662 1.19082 0.94290 0.85498 1.47007 0.90249 1.43584 1.41483 1.08224 1.24417 1.20297 0.83352 0.88879 0.81262 1.90471 1.67445 1.37336 1.51876 1.21703 0.94580 0.95799 1.00183 0.86132 1.22404 0.97873 0.92334 1.02838 1.30453 1.13542 1.09162 1.14334 1.08697 0.77717 0.78963 0.76078 1.93542 1.41883 1.75330 1.86168 1.93549 1.85398 1.84368 1.34348 1.30421 1.06783 1.20390 1.13000 1.22282 0.96912 0.87551 0.92431 1.22641 0.98813 1.00140 0.95364 1.22415 0.93982 1.00470 0.98008 1.22266 0.97739 1.00983 0.94403 1.22456 0.94914 1.01753 0.97604 0.93668 0.89844 0.85054 0.81080 0.80548 0.84689 0.86013 0.87542 0.93975 0.92001 0.89128 0.91909 0.89650 0.93850 0.88949 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.37 11.66 21.66 0.25 -51.12 16 2 C 0.02 1.03 4.40 84.93 0.37 1.41 16 3 Si 0.95 45.15 29.59 68.60 2.03 47.18 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.33 -17.06 7.53 84.04 0.63 -16.43 16 8 H 0.08 3.99 6.94 -2.91 -0.02 3.97 16 9 N -0.46 -20.31 2.48 -609.38 -1.51 -21.82 16 10 C 0.47 21.88 6.06 87.66 0.53 22.42 16 11 O -0.59 -33.74 13.28 -3.05 -0.04 -33.78 16 12 C -0.10 -3.16 2.06 -10.85 -0.02 -3.18 16 13 H 0.12 3.23 7.30 -2.39 -0.02 3.21 16 14 C -0.12 -2.50 5.40 31.59 0.17 -2.33 16 15 C -0.54 -7.87 7.32 72.68 0.53 -7.34 16 16 S 2.40 60.98 6.12 -56.49 -0.35 60.63 16 17 O -0.97 -29.34 18.15 -127.49 -2.31 -31.65 16 18 O -0.98 -32.60 18.15 -127.49 -2.31 -34.91 16 19 C -0.58 -18.55 6.60 72.38 0.48 -18.08 16 20 C 0.11 3.57 2.68 45.72 0.12 3.69 16 21 C -0.13 -4.21 6.42 31.67 0.20 -4.01 16 22 C -0.11 -2.60 6.91 31.88 0.22 -2.38 16 23 C -0.12 -2.83 6.83 31.67 0.22 -2.62 16 24 C -0.13 -3.51 6.18 31.32 0.19 -3.32 16 25 H 0.25 14.81 8.32 -92.70 -0.77 14.04 16 26 H 0.08 2.01 8.11 -2.39 -0.02 1.99 16 27 H 0.13 2.15 6.14 -2.39 -0.01 2.13 16 28 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.18 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.13 4.17 8.14 -2.39 -0.02 4.15 16 31 H 0.12 4.77 6.84 -2.39 -0.02 4.75 16 32 H 0.11 2.62 4.13 -2.38 -0.01 2.61 16 33 H 0.04 1.76 7.19 -2.38 -0.02 1.75 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.05 1.61 6.71 -2.39 -0.02 1.60 16 Total: -1.00 -82.71 324.06 0.45 -82.26 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.04 Total: 15.37 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 3.65 Total: -32.16 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -1.26 Total: -72.94 kcal Atomic # 8 Polarization: -95.67 SS G_CDS: -4.67 Total: -100.34 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 60.98 SS G_CDS: -0.35 Total: 60.63 kcal Total: -82.71 0.45 -82.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078209324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.489 kcal (2) G-P(sol) polarization free energy of solvation -82.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds