Wall clock time and date at job start Fri Apr 10 2020 14:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48496 * 109.47385 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47285 * 300.00191 * 3 2 1 6 6 H 1.48506 * 109.47121 * 59.99814 * 3 2 1 7 7 C 1.38952 * 120.00530 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00625 * 179.69494 * 7 2 1 9 9 N 1.37105 * 119.99663 * 359.69274 * 7 2 1 10 10 C 1.34773 * 119.99939 * 40.76129 * 9 7 2 11 11 O 1.21298 * 120.00225 * 3.63751 * 10 9 7 12 12 C 1.50700 * 119.99885 * 183.63214 * 10 9 7 13 13 H 1.08997 * 109.64606 * 312.20466 * 12 10 9 14 14 C 1.53881 * 109.64548 * 72.63717 * 12 10 9 15 15 C 1.54976 * 106.66072 * 167.15086 * 14 12 10 16 16 S 1.83291 * 102.47841 * 317.38162 * 15 14 12 17 17 O 1.42102 * 109.34911 * 269.90192 * 16 15 14 18 18 O 1.42089 * 109.47471 * 136.73294 * 16 15 14 19 19 C 1.54164 * 109.64474 * 191.77358 * 12 10 9 20 20 C 1.46494 * 119.99955 * 220.76492 * 9 7 2 21 21 C 1.53875 * 110.03574 * 54.77255 * 20 9 7 22 22 C 1.54275 * 106.59970 * 240.67056 * 21 20 9 23 23 C 1.54895 * 104.30774 * 336.32138 * 22 21 20 24 24 C 1.54274 * 110.06920 * 297.58130 * 20 9 7 25 25 H 0.96999 * 120.00567 * 4.59670 * 1 2 3 26 26 H 1.09001 * 110.02323 * 286.32409 * 14 12 10 27 27 H 1.08991 * 110.03048 * 47.73544 * 14 12 10 28 28 H 1.08993 * 110.75834 * 199.17208 * 15 14 12 29 29 H 1.09004 * 110.90394 * 75.65083 * 15 14 12 30 30 H 1.09001 * 110.32280 * 331.14085 * 19 12 10 31 31 H 1.08998 * 110.32131 * 93.24154 * 19 12 10 32 32 H 1.09003 * 110.01765 * 176.16823 * 20 9 7 33 33 H 1.08997 * 110.03363 * 121.38307 * 21 20 9 34 34 H 1.09000 * 110.07003 * 359.97395 * 21 20 9 35 35 H 1.08998 * 110.49097 * 95.06318 * 22 21 20 36 36 H 1.08995 * 110.48320 * 217.58247 * 22 21 20 37 37 H 1.09005 * 110.75019 * 156.32589 * 23 22 21 38 38 H 1.08995 * 110.75766 * 279.69246 * 23 22 21 39 39 H 1.08998 * 110.48410 * 261.59217 * 24 20 9 40 40 H 1.09001 * 110.48887 * 24.10760 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0055 9 7 1.3235 -2.3907 0.0053 10 6 0.2174 -2.5340 -0.7513 11 8 -0.1344 -1.6363 -1.4874 12 6 -0.5822 -3.8095 -0.6830 13 1 0.0870 -4.6662 -0.7616 14 6 -1.3460 -3.8704 0.6515 15 6 -2.3823 -5.0150 0.5185 16 16 -3.0428 -4.7568 -1.1716 17 8 -4.1657 -3.8881 -1.1107 18 8 -3.1520 -6.0091 -1.8340 19 6 -1.6045 -3.8427 -1.8364 20 6 1.7933 -3.5036 0.8340 21 6 1.9345 -3.0484 2.2971 22 6 3.4186 -3.2347 2.6753 23 6 3.9315 -4.3158 1.6917 24 6 3.1964 -3.9506 0.3741 25 1 -0.4851 0.8373 -0.0673 26 1 -0.6559 -4.0873 1.4669 27 1 -1.8545 -2.9239 0.8342 28 1 -3.1716 -4.9099 1.2627 29 1 -1.8990 -5.9887 0.6004 30 1 -1.8954 -2.8295 -2.1138 31 1 -1.1872 -4.3651 -2.6972 32 1 1.0954 -4.3383 0.7683 33 1 1.3051 -3.6622 2.9415 34 1 1.6541 -1.9993 2.3912 35 1 3.9672 -2.3029 2.5379 36 1 3.5092 -3.5816 3.7046 37 1 5.0120 -4.2431 1.5672 38 1 3.6467 -5.3120 2.0299 39 1 3.1249 -4.8221 -0.2765 40 1 3.7082 -3.1351 -0.1369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078209328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:18:25 Heat of formation + Delta-G solvation = -89.754385 kcal Electronic energy + Delta-G solvation = -24257.395321 eV Core-core repulsion = 20779.043513 eV Total energy + Delta-G solvation = -3478.351808 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -39.30102 -37.08161 -36.78790 -35.82179 -35.18722 -33.28931 -31.50577 -29.63681 -28.15039 -26.97500 -26.10884 -24.08645 -21.82576 -20.27957 -19.84908 -19.02384 -18.56991 -17.12916 -16.57743 -16.08393 -15.55447 -15.41376 -15.08222 -14.59502 -14.40573 -13.92814 -13.72349 -13.48125 -13.26055 -12.86701 -12.58793 -12.08884 -11.93282 -11.84343 -11.80615 -11.70423 -11.44536 -11.05759 -11.03289 -10.82919 -10.69863 -10.66870 -10.58029 -10.50429 -10.45069 -10.20819 -10.10230 -9.95457 -9.82622 -8.88949 -8.00442 -7.11776 -5.93499 -3.91362 0.29377 2.74378 3.26338 3.33027 3.35556 3.78839 4.08593 4.27278 4.30032 4.64045 4.75223 4.98869 5.00336 5.09370 5.11670 5.19920 5.24083 5.37451 5.43856 5.63509 5.74814 5.86277 5.92878 5.96128 5.96815 6.05136 6.11999 6.20259 6.30953 6.33882 6.36532 6.40528 6.51549 6.75023 6.82168 7.05474 7.59837 8.22973 9.04652 9.15687 9.65142 10.33001 10.97583 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.006247 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.348607 B = 4480.981803 C = 5734.345075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.043 3.957 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.321 4.321 8 H 0.080 0.920 9 N -0.450 5.450 10 C 0.466 3.534 11 O -0.497 6.497 12 C -0.101 4.101 13 H 0.093 0.907 14 C -0.110 4.110 15 C -0.587 4.587 16 S 2.379 3.621 17 O -0.941 6.941 18 O -0.953 6.953 19 C -0.564 4.564 20 C 0.125 3.875 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.134 4.134 25 H 0.260 0.740 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.157 0.843 31 H 0.132 0.868 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -10.204 4.446 11.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.167 4.167 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.449 4.449 8 H 0.098 0.902 9 N -0.172 5.172 10 C 0.251 3.749 11 O -0.371 6.371 12 C -0.124 4.124 13 H 0.111 0.889 14 C -0.149 4.149 15 C -0.717 4.717 16 S 2.564 3.436 17 O -0.939 6.939 18 O -0.950 6.950 19 C -0.695 4.695 20 C 0.020 3.980 21 C -0.166 4.166 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.173 4.173 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.174 0.826 31 H 0.151 0.849 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.496 -9.884 3.663 10.553 hybrid contribution 1.166 0.988 0.461 1.596 sum 1.662 -8.897 4.124 9.946 Atomic orbital electron populations 1.70069 1.05858 1.26547 1.42210 1.25287 0.95072 0.98903 0.97396 0.86168 0.79546 0.83139 0.77502 1.19780 1.21068 1.21178 1.18976 0.90790 0.81913 1.53215 0.90214 1.43330 1.25199 1.11052 1.37664 1.19234 0.84206 0.87075 0.84368 1.90537 1.68466 1.39856 1.38198 1.21729 0.96995 1.02064 0.91656 0.88904 1.22269 0.97106 0.97243 0.98267 1.30592 1.10764 1.07422 1.22902 1.09265 0.78472 0.76206 0.79652 1.93603 1.47591 1.66677 1.85988 1.93563 1.86971 1.41812 1.72691 1.30356 1.15248 1.16486 1.07389 1.21775 0.94731 0.90454 0.91029 1.22424 0.95440 1.03418 0.95362 1.22274 0.96878 0.98803 0.97664 1.22497 0.99174 0.98292 0.96060 1.22813 0.96934 1.00742 0.96802 0.92980 0.88358 0.88471 0.84809 0.84847 0.82564 0.84925 0.91053 0.93187 0.89388 0.91584 0.92850 0.92316 0.92238 0.92692 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.57 10.18 55.50 0.56 -22.00 16 2 C 0.04 1.14 4.96 -17.47 -0.09 1.05 16 3 Si 0.91 20.72 29.56 -169.99 -5.02 15.70 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.32 -7.99 7.64 -14.93 -0.11 -8.10 16 8 H 0.08 1.95 6.84 -52.49 -0.36 1.59 16 9 N -0.45 -9.94 2.54 -106.54 -0.27 -10.21 16 10 C 0.47 10.61 6.11 -10.99 -0.07 10.55 16 11 O -0.50 -13.56 12.27 5.54 0.07 -13.49 16 12 C -0.10 -1.69 2.05 -90.70 -0.19 -1.87 16 13 H 0.09 1.29 7.02 -51.93 -0.36 0.92 16 14 C -0.11 -1.61 5.43 -25.23 -0.14 -1.74 16 15 C -0.59 -6.63 7.31 38.20 0.28 -6.35 16 16 S 2.38 33.77 6.10 -107.50 -0.66 33.11 16 17 O -0.94 -16.93 18.15 -57.73 -1.05 -17.98 16 18 O -0.95 -15.45 18.15 -57.73 -1.05 -16.50 16 19 C -0.56 -8.82 6.58 37.77 0.25 -8.57 16 20 C 0.13 2.15 2.57 -66.81 -0.17 1.98 16 21 C -0.13 -2.08 6.25 -25.61 -0.16 -2.24 16 22 C -0.12 -1.67 6.82 -25.06 -0.17 -1.84 16 23 C -0.12 -1.58 6.93 -24.55 -0.17 -1.75 16 24 C -0.13 -2.08 6.43 -24.88 -0.16 -2.24 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.10 1.32 6.50 -51.93 -0.34 0.98 16 27 H 0.10 1.63 8.11 -51.93 -0.42 1.21 16 28 H 0.13 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.16 2.87 6.85 -51.93 -0.36 2.51 16 31 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.07 1.06 4.49 -51.93 -0.23 0.83 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.74 7.17 -51.93 -0.37 1.37 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.41 6.63 -51.93 -0.34 1.06 16 LS Contribution 322.55 15.07 4.86 4.86 Total: -1.00 -34.32 322.55 -9.18 -43.49 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.73 Total: 4.16 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -0.90 Total: -21.14 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.29 Total: -32.22 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -2.03 Total: -47.97 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 33.77 SS G_CDS: -0.66 Total: 33.11 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.32 -9.18 -43.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078209328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.260 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds