Wall clock time and date at job start Fri Apr 10 2020 14:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48496 * 109.47385 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47285 * 300.00191 * 3 2 1 6 6 H 1.48506 * 109.47121 * 59.99814 * 3 2 1 7 7 C 1.38952 * 120.00530 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00625 * 179.69494 * 7 2 1 9 9 N 1.37105 * 119.99663 * 359.69274 * 7 2 1 10 10 C 1.34773 * 119.99939 * 40.76129 * 9 7 2 11 11 O 1.21298 * 120.00225 * 3.63751 * 10 9 7 12 12 C 1.50700 * 119.99885 * 183.63214 * 10 9 7 13 13 H 1.08997 * 109.64606 * 312.20466 * 12 10 9 14 14 C 1.53881 * 109.64548 * 72.63717 * 12 10 9 15 15 C 1.54976 * 106.66072 * 167.15086 * 14 12 10 16 16 S 1.83291 * 102.47841 * 317.38162 * 15 14 12 17 17 O 1.42102 * 109.34911 * 269.90192 * 16 15 14 18 18 O 1.42089 * 109.47471 * 136.73294 * 16 15 14 19 19 C 1.54164 * 109.64474 * 191.77358 * 12 10 9 20 20 C 1.46494 * 119.99955 * 220.76492 * 9 7 2 21 21 C 1.53875 * 110.03574 * 54.77255 * 20 9 7 22 22 C 1.54275 * 106.59970 * 240.67056 * 21 20 9 23 23 C 1.54895 * 104.30774 * 336.32138 * 22 21 20 24 24 C 1.54274 * 110.06920 * 297.58130 * 20 9 7 25 25 H 0.96999 * 120.00567 * 4.59670 * 1 2 3 26 26 H 1.09001 * 110.02323 * 286.32409 * 14 12 10 27 27 H 1.08991 * 110.03048 * 47.73544 * 14 12 10 28 28 H 1.08993 * 110.75834 * 199.17208 * 15 14 12 29 29 H 1.09004 * 110.90394 * 75.65083 * 15 14 12 30 30 H 1.09001 * 110.32280 * 331.14085 * 19 12 10 31 31 H 1.08998 * 110.32131 * 93.24154 * 19 12 10 32 32 H 1.09003 * 110.01765 * 176.16823 * 20 9 7 33 33 H 1.08997 * 110.03363 * 121.38307 * 21 20 9 34 34 H 1.09000 * 110.07003 * 359.97395 * 21 20 9 35 35 H 1.08998 * 110.49097 * 95.06318 * 22 21 20 36 36 H 1.08995 * 110.48320 * 217.58247 * 22 21 20 37 37 H 1.09005 * 110.75019 * 156.32589 * 23 22 21 38 38 H 1.08995 * 110.75766 * 279.69246 * 23 22 21 39 39 H 1.08998 * 110.48410 * 261.59217 * 24 20 9 40 40 H 1.09001 * 110.48887 * 24.10760 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0055 9 7 1.3235 -2.3907 0.0053 10 6 0.2174 -2.5340 -0.7513 11 8 -0.1344 -1.6363 -1.4874 12 6 -0.5822 -3.8095 -0.6830 13 1 0.0870 -4.6662 -0.7616 14 6 -1.3460 -3.8704 0.6515 15 6 -2.3823 -5.0150 0.5185 16 16 -3.0428 -4.7568 -1.1716 17 8 -4.1657 -3.8881 -1.1107 18 8 -3.1520 -6.0091 -1.8340 19 6 -1.6045 -3.8427 -1.8364 20 6 1.7933 -3.5036 0.8340 21 6 1.9345 -3.0484 2.2971 22 6 3.4186 -3.2347 2.6753 23 6 3.9315 -4.3158 1.6917 24 6 3.1964 -3.9506 0.3741 25 1 -0.4851 0.8373 -0.0673 26 1 -0.6559 -4.0873 1.4669 27 1 -1.8545 -2.9239 0.8342 28 1 -3.1716 -4.9099 1.2627 29 1 -1.8990 -5.9887 0.6004 30 1 -1.8954 -2.8295 -2.1138 31 1 -1.1872 -4.3651 -2.6972 32 1 1.0954 -4.3383 0.7683 33 1 1.3051 -3.6622 2.9415 34 1 1.6541 -1.9993 2.3912 35 1 3.9672 -2.3029 2.5379 36 1 3.5092 -3.5816 3.7046 37 1 5.0120 -4.2431 1.5672 38 1 3.6467 -5.3120 2.0299 39 1 3.1249 -4.8221 -0.2765 40 1 3.7082 -3.1351 -0.1369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078209328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:18:23 Heat of formation + Delta-G solvation = -114.757794 kcal Electronic energy + Delta-G solvation = -24258.479550 eV Core-core repulsion = 20779.043513 eV Total energy + Delta-G solvation = -3479.436037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.84362 -38.43072 -38.05065 -37.10350 -36.59364 -35.00010 -33.30234 -30.82563 -29.34822 -28.42769 -27.57454 -25.62815 -23.18282 -21.44218 -21.24499 -20.58075 -19.76016 -18.57114 -17.84145 -17.63578 -16.93097 -16.71752 -16.54449 -16.11304 -15.74094 -15.33449 -15.20035 -14.80537 -14.68109 -14.13962 -13.99284 -13.39734 -13.33405 -13.23917 -13.11778 -12.93078 -12.90211 -12.85513 -12.49084 -12.29787 -12.23528 -12.01550 -11.94062 -11.76761 -11.72516 -11.65778 -11.30126 -11.20088 -11.14588 -10.78140 -9.79658 -8.95616 -7.89593 -5.88851 -0.85319 1.39338 1.42119 1.50696 1.61593 2.36049 2.56049 2.69388 3.06587 3.27330 3.30278 3.46865 3.77416 3.83870 3.93275 3.95476 4.06767 4.10658 4.28749 4.47548 4.64334 4.68866 4.70595 4.76710 4.86522 4.87295 4.91057 5.00256 5.09367 5.17711 5.20168 5.24966 5.37121 5.49490 5.58813 5.67191 5.73839 6.29049 7.14673 7.35825 7.85671 8.57389 8.99185 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.006247 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.348607 B = 4480.981803 C = 5734.345075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C -0.008 4.008 3 Si 0.960 3.040 4 H -0.259 1.259 5 H -0.299 1.299 6 H -0.282 1.282 7 C -0.320 4.320 8 H 0.078 0.922 9 N -0.462 5.462 10 C 0.452 3.548 11 O -0.557 6.557 12 C -0.098 4.098 13 H 0.133 0.867 14 C -0.112 4.112 15 C -0.548 4.548 16 S 2.399 3.601 17 O -0.986 6.986 18 O -0.969 6.969 19 C -0.573 4.573 20 C 0.116 3.884 21 C -0.127 4.127 22 C -0.117 4.117 23 C -0.110 4.110 24 C -0.135 4.135 25 H 0.248 0.752 26 H 0.120 0.880 27 H 0.065 0.935 28 H 0.162 0.838 29 H 0.180 0.820 30 H 0.119 0.881 31 H 0.150 0.850 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 -13.867 6.472 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.214 4.214 3 Si 0.788 3.212 4 H -0.183 1.183 5 H -0.226 1.226 6 H -0.208 1.208 7 C -0.449 4.449 8 H 0.095 0.905 9 N -0.183 5.183 10 C 0.239 3.761 11 O -0.435 6.435 12 C -0.121 4.121 13 H 0.151 0.849 14 C -0.151 4.151 15 C -0.681 4.681 16 S 2.587 3.413 17 O -0.983 6.983 18 O -0.966 6.966 19 C -0.703 4.703 20 C 0.012 3.988 21 C -0.165 4.165 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.174 4.174 25 H 0.058 0.942 26 H 0.138 0.862 27 H 0.084 0.916 28 H 0.179 0.821 29 H 0.197 0.803 30 H 0.138 0.862 31 H 0.168 0.832 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.642 -13.561 5.683 14.795 hybrid contribution 0.891 2.057 -0.161 2.247 sum 2.534 -11.505 5.522 13.010 Atomic orbital electron populations 1.70230 1.07076 1.26057 1.44899 1.25992 0.95667 1.01834 0.97893 0.85357 0.79229 0.79966 0.76688 1.18317 1.22623 1.20834 1.19117 0.90858 0.83280 1.51612 0.90458 1.43595 1.24957 1.11506 1.38266 1.20251 0.84303 0.88403 0.83123 1.90509 1.69889 1.42560 1.40517 1.21747 0.97292 0.99812 0.93253 0.84932 1.22231 0.97997 0.97366 0.97512 1.30440 1.10276 1.08161 1.19210 1.08613 0.77033 0.74747 0.80950 1.93545 1.49665 1.67940 1.87159 1.93537 1.86949 1.41707 1.74384 1.30390 1.16448 1.15130 1.08341 1.22156 0.96351 0.89551 0.90755 1.22390 0.97590 1.01114 0.95441 1.22266 0.94992 0.98586 0.99651 1.22472 0.99478 0.99111 0.93686 1.22796 0.95756 1.00361 0.98463 0.94242 0.86156 0.91618 0.82050 0.80252 0.86223 0.83196 0.87882 0.90252 0.93860 0.93798 0.90207 0.91295 0.89208 0.90580 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.76 10.18 21.66 0.22 -49.54 16 2 C -0.01 -0.46 4.96 84.93 0.42 -0.03 16 3 Si 0.96 44.42 29.56 68.60 2.03 46.45 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.32 -16.40 7.64 84.04 0.64 -15.76 16 8 H 0.08 3.90 6.84 -2.91 -0.02 3.88 16 9 N -0.46 -20.49 2.54 -609.37 -1.55 -22.03 16 10 C 0.45 20.92 6.11 87.66 0.54 21.46 16 11 O -0.56 -32.08 12.27 -3.09 -0.04 -32.12 16 12 C -0.10 -3.11 2.05 -10.85 -0.02 -3.13 16 13 H 0.13 3.10 7.02 -2.39 -0.02 3.09 16 14 C -0.11 -2.95 5.43 31.57 0.17 -2.78 16 15 C -0.55 -9.68 7.31 72.66 0.53 -9.15 16 16 S 2.40 64.04 6.10 -56.49 -0.34 63.69 16 17 O -0.99 -35.54 18.15 -127.47 -2.31 -37.86 16 18 O -0.97 -29.00 18.15 -127.47 -2.31 -31.31 16 19 C -0.57 -17.89 6.58 72.38 0.48 -17.41 16 20 C 0.12 3.68 2.57 45.72 0.12 3.80 16 21 C -0.13 -3.84 6.25 31.32 0.20 -3.65 16 22 C -0.12 -2.97 6.82 31.67 0.22 -2.75 16 23 C -0.11 -2.38 6.93 32.01 0.22 -2.15 16 24 C -0.14 -3.81 6.43 31.79 0.20 -3.60 16 25 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.12 2.67 6.50 -2.39 -0.02 2.65 16 27 H 0.06 2.19 8.11 -2.39 -0.02 2.17 16 28 H 0.16 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.18 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.12 4.73 6.85 -2.39 -0.02 4.71 16 31 H 0.15 3.95 8.14 -2.39 -0.02 3.93 16 32 H 0.10 2.57 4.49 -2.39 -0.01 2.56 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.04 1.71 7.17 -2.39 -0.02 1.69 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.38 8.14 -2.38 -0.02 1.37 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 1.60 6.63 -2.39 -0.02 1.58 16 Total: -1.00 -81.33 322.55 0.45 -80.88 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 1.04 Total: 16.99 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 3.71 Total: -35.16 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.33 Total: -71.57 kcal Atomic # 8 Polarization: -96.62 SS G_CDS: -4.66 Total: -101.29 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 64.04 SS G_CDS: -0.34 Total: 63.69 kcal Total: -81.33 0.45 -80.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078209328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.873 kcal (2) G-P(sol) polarization free energy of solvation -81.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds