Wall clock time and date at job start Fri Apr 10 2020 14:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86797 * 120.00263 * 2 1 4 4 H 1.48500 * 109.47214 * 270.00431 * 3 2 1 5 5 H 1.48505 * 109.47237 * 30.00068 * 3 2 1 6 6 H 1.48496 * 109.47326 * 149.99908 * 3 2 1 7 7 C 1.40051 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00383 * 179.97438 * 7 2 1 9 9 C 1.46379 * 120.00032 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99321 * 8.20905 * 9 7 2 11 11 N 1.34769 * 120.00336 * 188.20753 * 9 7 2 12 12 C 1.46396 * 119.70566 * 355.36281 * 11 9 7 13 13 C 1.53216 * 109.52198 * 244.29995 * 12 11 9 14 14 S 1.81678 * 108.93768 * 301.72251 * 13 12 11 15 15 O 1.42094 * 108.65100 * 301.15429 * 14 13 12 16 16 O 1.42102 * 108.65465 * 169.84782 * 14 13 12 17 17 C 1.81598 * 101.37687 * 55.50147 * 14 13 12 18 18 C 1.52904 * 109.51514 * 184.57482 * 17 14 13 19 19 C 1.53012 * 109.48027 * 180.02562 * 18 17 14 20 20 C 1.53003 * 109.47029 * 59.86901 * 19 18 17 21 21 C 1.53003 * 109.49314 * 299.97059 * 20 19 18 22 22 C 1.52925 * 109.47693 * 64.34342 * 17 14 13 23 23 C 1.46403 * 119.70675 * 175.34412 * 11 9 7 24 24 H 0.97000 * 120.00309 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.45609 * 4.32409 * 12 11 9 26 26 H 1.08997 * 109.45490 * 124.28832 * 12 11 9 27 27 H 1.09001 * 109.55071 * 181.88798 * 13 12 11 28 28 H 1.09005 * 109.57151 * 61.56930 * 13 12 11 29 29 H 1.09000 * 109.47080 * 300.02637 * 18 17 14 30 30 H 1.09001 * 109.46830 * 60.01625 * 18 17 14 31 31 H 1.09000 * 109.47347 * 299.87027 * 19 18 17 32 32 H 1.09000 * 109.47594 * 179.86891 * 19 18 17 33 33 H 1.08998 * 109.46919 * 179.97438 * 20 19 18 34 34 H 1.09002 * 109.46033 * 59.97732 * 20 19 18 35 35 H 1.09000 * 109.47509 * 300.05367 * 21 20 19 36 36 H 1.09002 * 109.47883 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.46526 * 300.02539 * 22 17 14 38 38 H 1.09001 * 109.47318 * 60.02231 * 22 17 14 39 39 H 1.08999 * 109.46827 * 355.77916 * 23 11 9 40 40 H 1.08997 * 109.46086 * 235.79008 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4881 2.0464 -1.4001 5 1 1.4382 2.6527 0.7001 6 1 3.5382 1.4401 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4806 -0.0005 10 8 0.0674 -2.4858 -0.1506 11 7 1.9386 -3.6418 0.1656 12 6 3.4005 -3.6373 0.2434 13 6 3.9791 -4.4032 -0.9508 14 16 3.3280 -6.0992 -0.9350 15 8 3.6929 -6.7147 0.2926 16 8 3.6736 -6.7302 -2.1605 17 6 1.5376 -5.7955 -0.9229 18 6 0.7948 -7.1257 -0.7938 19 6 -0.7136 -6.8689 -0.7842 20 6 -1.1216 -6.1783 -2.0872 21 6 -0.3792 -4.8464 -2.2133 22 6 1.1291 -5.1029 -2.2237 23 6 1.1910 -4.8965 0.2669 24 1 -0.4850 0.8400 0.0004 25 1 3.7618 -2.6090 0.2253 26 1 3.7161 -4.1168 1.1699 27 1 5.0662 -4.4289 -0.8755 28 1 3.6876 -3.9089 -1.8775 29 1 1.0488 -7.7671 -1.6377 30 1 1.0859 -7.6156 0.1354 31 1 -0.9680 -6.2294 0.0610 32 1 -1.2432 -7.8174 -0.6945 33 1 -2.1962 -5.9958 -2.0806 34 1 -0.8668 -6.8177 -2.9323 35 1 -0.6332 -4.2073 -1.3676 36 1 -0.6703 -4.3544 -3.1413 37 1 1.6584 -4.1541 -2.3118 38 1 1.3833 -5.7407 -3.0703 39 1 0.1220 -4.6838 0.2622 40 1 1.4565 -5.4034 1.1946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408319375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:16:17 Heat of formation + Delta-G solvation = -133.506580 kcal Electronic energy + Delta-G solvation = -24889.703941 eV Core-core repulsion = 21409.454895 eV Total energy + Delta-G solvation = -3480.249046 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99364 -38.91054 -38.12419 -37.14082 -36.38304 -34.63242 -32.84639 -31.79309 -31.28474 -29.03025 -26.65885 -24.66973 -23.63096 -23.45771 -21.52499 -20.32041 -19.26980 -18.70101 -18.02068 -17.80962 -16.99867 -16.71793 -16.53337 -16.20198 -15.95373 -15.39208 -15.08732 -14.91175 -14.34872 -14.13126 -14.07147 -13.83693 -13.49610 -13.30045 -13.26989 -13.16086 -13.12549 -12.92760 -12.83518 -12.70648 -12.45545 -12.37852 -12.13178 -12.05854 -11.93086 -11.43131 -11.19028 -11.09700 -10.90020 -10.61352 -9.68718 -9.29340 -8.27159 -6.80254 -0.96761 1.41750 1.43029 1.56427 1.65518 2.22373 2.46414 2.53462 2.67593 2.95348 3.34933 3.45005 3.60996 3.76201 3.85366 4.01421 4.15628 4.21566 4.28733 4.33072 4.39061 4.55098 4.59084 4.62883 4.77856 4.79313 4.82583 4.92860 4.98237 5.01223 5.23438 5.24165 5.33019 5.35850 5.43172 5.66886 5.70969 6.13469 6.27400 6.92455 7.34163 8.49029 8.68679 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.018626 B = 0.006427 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.919585 B = 4355.841304 C = 5304.163616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.036 3.964 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.247 1.247 7 C -0.570 4.570 8 H 0.097 0.903 9 C 0.552 3.448 10 O -0.603 6.603 11 N -0.648 5.648 12 C 0.120 3.880 13 C -0.610 4.610 14 S 2.423 3.577 15 O -0.962 6.962 16 O -0.968 6.968 17 C -0.527 4.527 18 C -0.101 4.101 19 C -0.109 4.109 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.088 4.088 23 C 0.132 3.868 24 H 0.272 0.728 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.170 0.830 28 H 0.140 0.860 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.022 -9.485 -2.170 10.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.170 1.170 7 C -0.606 4.606 8 H 0.115 0.885 9 C 0.358 3.642 10 O -0.488 6.488 11 N -0.384 5.384 12 C -0.005 4.005 13 C -0.743 4.743 14 S 2.611 3.389 15 O -0.959 6.959 16 O -0.965 6.965 17 C -0.620 4.620 18 C -0.140 4.140 19 C -0.147 4.147 20 C -0.151 4.151 21 C -0.162 4.162 22 C -0.127 4.127 23 C 0.007 3.993 24 H 0.082 0.918 25 H 0.136 0.864 26 H 0.107 0.893 27 H 0.188 0.812 28 H 0.159 0.841 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.706 -10.235 -2.226 11.483 hybrid contribution -0.263 1.702 -0.088 1.724 sum 4.443 -8.534 -2.314 9.895 Atomic orbital electron populations 1.70134 1.09201 1.28719 1.36575 1.26782 0.95361 1.04401 0.91409 0.85204 0.79118 0.76100 0.79122 1.19160 1.20429 1.17043 1.21529 0.94952 0.89740 1.54426 0.88488 1.18465 0.86648 0.83428 0.75685 1.90541 1.16323 1.86551 1.55416 1.48075 1.05893 1.06290 1.78145 1.21331 0.80194 1.04174 0.94763 1.30533 1.13640 1.20944 1.09143 1.07849 0.78449 0.78525 0.74071 1.93508 1.81854 1.74662 1.45896 1.93505 1.82444 1.74306 1.46277 1.29953 1.22298 1.05187 1.04543 1.21465 0.97008 0.91391 1.04140 1.21466 0.93858 1.01407 0.97970 1.21515 0.99610 0.95606 0.98322 1.21555 0.93992 0.98459 1.02189 1.21244 0.98704 0.99469 0.93240 1.21152 1.00619 0.83712 0.93768 0.91792 0.86440 0.89349 0.81213 0.84139 0.89251 0.89243 0.92498 0.89028 0.91736 0.90733 0.91660 0.93004 0.92321 0.89521 0.88656 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.52 11.86 21.84 0.26 -46.26 16 2 C 0.04 1.87 5.50 85.31 0.47 2.34 16 3 Si 0.98 38.24 29.56 68.60 2.03 40.27 16 4 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.25 -8.83 7.11 99.48 0.71 -8.13 16 7 C -0.57 -28.83 8.83 24.83 0.22 -28.61 16 8 H 0.10 4.29 5.58 -2.91 -0.02 4.27 16 9 C 0.55 28.04 7.50 86.36 0.65 28.68 16 10 O -0.60 -35.26 12.57 -4.33 -0.05 -35.32 16 11 N -0.65 -25.53 2.11 -826.80 -1.75 -27.28 16 12 C 0.12 3.76 6.11 86.47 0.53 4.29 16 13 C -0.61 -15.74 6.12 72.05 0.44 -15.30 16 14 S 2.42 69.92 4.19 -56.49 -0.24 69.68 16 15 O -0.96 -31.22 18.02 -127.39 -2.30 -33.51 16 16 O -0.97 -31.53 17.76 -127.39 -2.26 -33.79 16 17 C -0.53 -15.62 0.55 -10.82 -0.01 -15.63 16 18 C -0.10 -2.50 4.74 30.57 0.14 -2.35 16 19 C -0.11 -2.61 5.65 30.60 0.17 -2.43 16 20 C -0.11 -2.94 5.92 30.60 0.18 -2.75 16 21 C -0.12 -4.16 5.65 30.60 0.17 -3.99 16 22 C -0.09 -2.78 4.37 30.57 0.13 -2.65 16 23 C 0.13 4.63 4.24 86.43 0.37 4.99 16 24 H 0.27 14.26 8.29 -92.71 -0.77 13.49 16 25 H 0.12 3.76 5.14 -2.38 -0.01 3.74 16 26 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.17 3.13 8.14 -2.39 -0.02 3.12 16 28 H 0.14 3.60 7.17 -2.39 -0.02 3.59 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 1.55 6.50 -2.39 -0.02 1.53 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 2.76 4.47 -2.39 -0.01 2.74 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 2.04 6.25 -2.38 -0.01 2.03 16 38 H 0.09 2.40 7.97 -2.39 -0.02 2.38 16 39 H 0.10 3.80 3.81 -2.39 -0.01 3.80 16 40 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -71.18 311.02 0.22 -70.95 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 1.06 Total: 28.67 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 3.47 Total: -33.42 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.49 Total: -73.54 kcal Atomic # 8 Polarization: -98.00 SS G_CDS: -4.61 Total: -102.62 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Atomic # 16 Polarization: 69.92 SS G_CDS: -0.24 Total: 69.68 kcal Total: -71.18 0.22 -70.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408319375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.553 kcal (2) G-P(sol) polarization free energy of solvation -71.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds