Wall clock time and date at job start Fri Apr 10 2020 14:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48504 * 109.47156 * 273.43267 * 3 2 1 5 5 H 1.48504 * 109.47142 * 33.43229 * 3 2 1 6 6 H 1.48500 * 109.47481 * 153.43289 * 3 2 1 7 7 C 1.38953 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00044 * 336.63479 * 7 2 1 9 9 N 1.37095 * 120.00228 * 156.63462 * 7 2 1 10 10 C 1.34780 * 119.99844 * 321.83566 * 9 7 2 11 11 O 1.21288 * 120.00205 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99805 * 179.97438 * 10 9 7 13 13 H 1.09006 * 110.28826 * 325.70339 * 12 10 9 14 14 C 1.54172 * 110.31937 * 87.81839 * 12 10 9 15 15 C 1.54023 * 108.62985 * 146.72830 * 14 12 10 16 16 C 1.55046 * 106.69788 * 312.95270 * 15 14 12 17 17 S 1.82921 * 110.32058 * 203.58677 * 12 10 9 18 18 O 1.42100 * 109.35012 * 352.37794 * 17 12 10 19 19 O 1.42105 * 109.35259 * 125.44188 * 17 12 10 20 20 C 1.46496 * 120.00175 * 141.84066 * 9 7 2 21 21 C 1.54276 * 110.02973 * 297.38529 * 20 9 7 22 22 C 1.54958 * 104.15888 * 95.75426 * 21 20 9 23 23 C 1.54895 * 102.77839 * 37.88647 * 22 21 20 24 24 C 1.53871 * 110.03433 * 54.60028 * 20 9 7 25 25 H 0.96995 * 119.99968 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.64355 * 266.66397 * 14 12 10 27 27 H 1.08997 * 109.64032 * 26.96110 * 14 12 10 28 28 H 1.09000 * 110.02329 * 193.61744 * 15 14 12 29 29 H 1.08999 * 109.95298 * 72.24732 * 15 14 12 30 30 H 1.08997 * 110.78927 * 284.11734 * 16 15 14 31 31 H 1.09001 * 110.95100 * 160.73367 * 16 15 14 32 32 H 1.09001 * 110.02085 * 175.99944 * 20 9 7 33 33 H 1.09002 * 110.48145 * 214.39953 * 21 20 9 34 34 H 1.08998 * 110.48042 * 337.04363 * 21 20 9 35 35 H 1.08997 * 110.72099 * 279.57430 * 22 21 20 36 36 H 1.09000 * 110.92531 * 156.29633 * 22 21 20 37 37 H 1.09000 * 110.48456 * 203.40408 * 23 22 21 38 38 H 1.09005 * 110.48160 * 80.76456 * 23 22 21 39 39 H 1.08998 * 110.03066 * 359.95443 * 24 20 9 40 40 H 1.09002 * 110.03177 * 121.38631 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4230 2.0884 -1.3976 5 1 1.4837 2.6307 0.7714 6 1 3.5801 1.4204 0.6262 7 6 2.0090 -1.2033 -0.0005 8 1 1.5355 -2.1005 0.3700 9 7 3.2956 -1.2518 -0.4714 10 6 3.6477 -0.5193 -1.5466 11 8 2.8264 0.1830 -2.0974 12 6 5.0621 -0.5721 -2.0639 13 1 5.7625 -0.6940 -1.2375 14 6 5.2200 -1.7261 -3.0740 15 6 6.2458 -1.3067 -4.1437 16 6 5.8593 0.1257 -4.5941 17 16 5.4507 0.9463 -3.0070 18 8 4.2677 1.7173 -3.1663 19 8 6.6207 1.5479 -2.4697 20 6 4.2877 -2.0997 0.1940 21 6 4.5031 -1.6219 1.6450 22 6 3.5669 -2.5270 2.4850 23 6 3.6927 -3.8996 1.7783 24 6 3.7723 -3.5471 0.2786 25 1 -0.4850 0.8400 0.0004 26 1 5.5707 -2.6196 -2.5577 27 1 4.2604 -1.9319 -3.5480 28 1 6.2008 -1.9896 -4.9920 29 1 7.2488 -1.3060 -3.7172 30 1 4.9911 0.1031 -5.2527 31 1 6.6994 0.6212 -5.0809 32 1 5.2304 -2.0703 -0.3525 33 1 5.5414 -1.7658 1.9438 34 1 4.2168 -0.5753 1.7484 35 1 2.5400 -2.1638 2.4433 36 1 3.9107 -2.5911 3.5174 37 1 2.8153 -4.5142 1.9797 38 1 4.6001 -4.4117 2.0986 39 1 2.7837 -3.6184 -0.1747 40 1 4.4649 -4.2201 -0.2269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563353459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:18:07 Heat of formation + Delta-G solvation = -112.415744 kcal Electronic energy + Delta-G solvation = -24819.976823 eV Core-core repulsion = 21340.642345 eV Total energy + Delta-G solvation = -3479.334478 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.27976 -38.76819 -38.00036 -37.19956 -36.73320 -35.26323 -33.94746 -31.39126 -29.46135 -28.77593 -27.17924 -25.75386 -22.70052 -22.16846 -21.34147 -21.01231 -19.81329 -19.06258 -18.03952 -17.70675 -17.38487 -16.88013 -16.46757 -16.06918 -15.93094 -15.48981 -15.40292 -15.04085 -14.82586 -14.67091 -14.18295 -13.94525 -13.48021 -13.28869 -13.14518 -13.11895 -12.94556 -12.82496 -12.73951 -12.27621 -12.15956 -11.95365 -11.87702 -11.80925 -11.77974 -11.66001 -11.44594 -11.19733 -11.14452 -10.59908 -10.36129 -9.56256 -8.43312 -6.05356 -0.96154 1.14133 1.22096 1.56062 1.62586 1.88018 2.40029 2.49475 2.70587 3.06363 3.15728 3.47336 3.61943 3.76429 3.79778 3.82615 3.92335 4.08074 4.23053 4.25033 4.58699 4.63075 4.67476 4.69526 4.77390 4.81672 4.94268 5.01222 5.06167 5.07099 5.19347 5.19940 5.25018 5.43978 5.47816 5.69433 5.71695 5.91038 6.74942 6.91742 7.37761 7.87160 8.64941 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.015351 B = 0.008321 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.568773 B = 3364.266181 C = 4370.927674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.059 3.941 3 Si 0.900 3.100 4 H -0.245 1.245 5 H -0.314 1.314 6 H -0.271 1.271 7 C -0.316 4.316 8 H 0.084 0.916 9 N -0.453 5.453 10 C 0.445 3.555 11 O -0.555 6.555 12 C -0.581 4.581 13 H 0.173 0.827 14 C -0.097 4.097 15 C -0.110 4.110 16 C -0.550 4.550 17 S 2.350 3.650 18 O -0.961 6.961 19 O -0.975 6.975 20 C 0.111 3.889 21 C -0.135 4.135 22 C -0.122 4.122 23 C -0.110 4.110 24 C -0.124 4.124 25 H 0.268 0.732 26 H 0.130 0.870 27 H 0.075 0.925 28 H 0.136 0.864 29 H 0.116 0.884 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.033 0.967 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.275 -10.283 -5.161 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.731 3.269 4 H -0.171 1.171 5 H -0.244 1.244 6 H -0.196 1.196 7 C -0.444 4.444 8 H 0.102 0.898 9 N -0.174 5.174 10 C 0.233 3.767 11 O -0.439 6.439 12 C -0.692 4.692 13 H 0.190 0.810 14 C -0.136 4.136 15 C -0.149 4.149 16 C -0.685 4.685 17 S 2.538 3.462 18 O -0.958 6.958 19 O -0.972 6.972 20 C 0.008 3.992 21 C -0.173 4.173 22 C -0.160 4.160 23 C -0.147 4.147 24 C -0.163 4.163 25 H 0.078 0.922 26 H 0.148 0.852 27 H 0.094 0.906 28 H 0.154 0.846 29 H 0.134 0.866 30 H 0.167 0.833 31 H 0.186 0.814 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 17.686 -8.884 -5.110 20.441 hybrid contribution -0.735 0.817 0.306 1.141 sum 16.951 -8.066 -4.804 19.377 Atomic orbital electron populations 1.69830 1.07671 1.28105 1.48457 1.25572 0.94978 1.00670 0.93331 0.86639 0.79200 0.82236 0.78832 1.17088 1.24375 1.19616 1.18544 0.88036 0.94958 1.42818 0.89817 1.43869 1.09475 1.40450 1.23656 1.19875 0.88946 0.85414 0.82429 1.90773 1.52358 1.41516 1.59238 1.30558 1.02801 1.22223 1.13649 0.80962 1.22095 1.01914 0.96042 0.93580 1.22431 1.00113 0.92402 0.99916 1.30441 1.13374 1.09499 1.15148 1.10106 0.74418 0.79087 0.82636 1.93673 1.48332 1.68222 1.85569 1.93532 1.49191 1.74913 1.79531 1.22342 0.91893 0.91205 0.93764 1.22754 1.00751 0.98708 0.95106 1.22449 0.98998 0.95725 0.98789 1.22263 1.02194 0.96190 0.94065 1.22432 1.01482 0.94509 0.97829 0.92219 0.85208 0.90573 0.84585 0.86592 0.83337 0.81383 0.86726 0.88010 0.94797 0.94212 0.90515 0.92454 0.88885 0.93508 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.98 13.96 21.66 0.30 -57.68 16 2 C 0.06 3.63 4.75 84.93 0.40 4.03 16 3 Si 0.90 52.58 24.89 68.60 1.71 54.29 16 4 H -0.25 -15.58 5.57 99.48 0.55 -15.02 16 5 H -0.31 -18.19 7.11 99.48 0.71 -17.48 16 6 H -0.27 -14.83 7.02 99.48 0.70 -14.13 16 7 C -0.32 -17.42 7.62 84.04 0.64 -16.78 16 8 H 0.08 4.82 6.85 -2.91 -0.02 4.80 16 9 N -0.45 -20.33 2.12 -609.38 -1.29 -21.63 16 10 C 0.44 20.17 4.99 87.66 0.44 20.61 16 11 O -0.56 -31.26 9.40 19.48 0.18 -31.08 16 12 C -0.58 -17.70 2.65 30.24 0.08 -17.62 16 13 H 0.17 4.20 6.41 -2.38 -0.02 4.18 16 14 C -0.10 -1.84 5.85 31.34 0.18 -1.66 16 15 C -0.11 -1.25 6.48 31.64 0.20 -1.05 16 16 C -0.55 -9.53 7.31 72.68 0.53 -9.00 16 17 S 2.35 78.01 5.91 -56.49 -0.33 77.67 16 18 O -0.96 -45.22 14.97 -118.62 -1.78 -47.00 16 19 O -0.97 -35.13 18.15 -127.47 -2.31 -37.45 16 20 C 0.11 3.55 3.16 45.72 0.14 3.69 16 21 C -0.14 -4.28 6.17 31.70 0.20 -4.08 16 22 C -0.12 -3.75 6.57 31.91 0.21 -3.55 16 23 C -0.11 -2.74 6.83 31.67 0.22 -2.53 16 24 C -0.12 -3.46 6.15 31.32 0.19 -3.26 16 25 H 0.27 16.67 8.31 -92.71 -0.77 15.90 16 26 H 0.13 1.58 7.86 -2.39 -0.02 1.56 16 27 H 0.08 1.74 7.85 -2.39 -0.02 1.72 16 28 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.15 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.17 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.12 2.71 5.14 -2.39 -0.01 2.69 16 33 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.03 1.33 7.95 -2.39 -0.02 1.32 16 35 H 0.04 1.56 7.19 -2.39 -0.02 1.55 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.05 1.66 6.68 -2.39 -0.02 1.64 16 40 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -91.05 315.14 0.79 -90.26 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 0.88 Total: 3.81 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 3.44 Total: -31.20 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -0.99 Total: -79.31 kcal Atomic # 8 Polarization: -111.62 SS G_CDS: -3.91 Total: -115.53 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 1.71 Total: 54.29 kcal Atomic # 16 Polarization: 78.01 SS G_CDS: -0.33 Total: 77.67 kcal Total: -91.05 0.79 -90.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563353459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.155 kcal (2) G-P(sol) polarization free energy of solvation -91.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds