Wall clock time and date at job start Fri Apr 10 2020 14:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86809 * 119.99708 * 2 1 4 4 H 1.48506 * 109.46627 * 239.99520 * 3 2 1 5 5 H 1.48497 * 109.46822 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47026 * 119.99980 * 3 2 1 7 7 C 1.38948 * 120.00546 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00421 * 175.67929 * 7 2 1 9 9 N 1.37108 * 119.99755 * 355.68597 * 7 2 1 10 10 C 1.34780 * 119.99557 * 60.46770 * 9 7 2 11 11 O 1.21297 * 119.99661 * 185.56001 * 10 9 7 12 12 C 1.50699 * 120.00678 * 5.55615 * 10 9 7 13 13 H 1.09006 * 110.27854 * 335.61481 * 12 10 9 14 14 C 1.54158 * 110.32045 * 213.49756 * 12 10 9 15 15 C 1.53885 * 108.70245 * 213.18533 * 14 12 10 16 16 C 1.55042 * 106.61966 * 47.18283 * 15 14 12 17 17 S 1.82916 * 110.31682 * 97.83117 * 12 10 9 18 18 O 1.42103 * 109.35301 * 234.42994 * 17 12 10 19 19 O 1.42096 * 109.35425 * 7.63021 * 17 12 10 20 20 C 1.46495 * 120.00201 * 240.46658 * 9 7 2 21 21 C 1.53872 * 110.03101 * 295.09350 * 20 9 7 22 22 C 1.54271 * 106.60126 * 119.28234 * 21 20 9 23 23 C 1.54891 * 104.19164 * 336.38810 * 22 21 20 24 24 C 1.54273 * 110.02857 * 52.25601 * 20 9 7 25 25 H 0.97000 * 120.00267 * 5.00469 * 1 2 3 26 26 H 1.08997 * 109.64978 * 333.04248 * 14 12 10 27 27 H 1.09002 * 109.64927 * 93.34051 * 14 12 10 28 28 H 1.08995 * 110.02514 * 166.47001 * 15 14 12 29 29 H 1.08995 * 110.02985 * 287.84495 * 15 14 12 30 30 H 1.09000 * 110.79370 * 75.83547 * 16 15 14 31 31 H 1.09001 * 110.79175 * 199.10616 * 16 15 14 32 32 H 1.08991 * 110.05756 * 173.67308 * 20 9 7 33 33 H 1.08998 * 110.02998 * 238.56688 * 21 20 9 34 34 H 1.08999 * 110.03578 * 359.97438 * 21 20 9 35 35 H 1.08997 * 110.48436 * 95.06623 * 22 21 20 36 36 H 1.08997 * 110.48853 * 217.70705 * 22 21 20 37 37 H 1.08990 * 110.75698 * 279.62167 * 23 22 21 38 38 H 1.09008 * 110.91264 * 156.33029 * 23 22 21 39 39 H 1.08999 * 110.48815 * 23.00545 * 24 20 9 40 40 H 1.09000 * 110.48242 * 145.51906 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0866 -1.2046 -0.0699 9 7 1.3264 -2.3890 0.0904 10 6 0.4272 -2.7223 -0.8567 11 8 -0.2491 -3.7207 -0.7262 12 6 0.2618 -1.8545 -2.0776 13 1 0.5839 -0.8354 -1.8632 14 6 -1.2067 -1.8644 -2.5465 15 6 -1.2357 -1.7438 -4.0803 16 6 -0.2002 -2.7612 -4.6248 17 16 1.2140 -2.5426 -3.4796 18 8 2.0853 -1.5439 -3.9924 19 8 1.7292 -3.8168 -3.1187 20 6 1.5744 -3.2935 1.2157 21 6 3.0192 -3.8202 1.1600 22 6 3.7073 -3.3578 2.4610 23 6 2.8860 -2.1225 2.9066 24 6 1.4351 -2.5293 2.5486 25 1 -0.4850 0.8368 -0.0733 26 1 -1.6820 -2.7972 -2.2432 27 1 -1.7389 -1.0230 -2.1027 28 1 -2.2300 -1.9864 -4.4551 29 1 -0.9603 -0.7329 -4.3806 30 1 -0.5899 -3.7776 -4.5687 31 1 0.0846 -2.5137 -5.6475 32 1 0.8720 -4.1264 1.1876 33 1 3.0178 -4.9088 1.1049 34 1 3.5356 -3.4032 0.2954 35 1 3.6590 -4.1412 3.2173 36 1 4.7425 -3.0777 2.2662 37 1 3.1877 -1.2363 2.3485 38 1 2.9867 -1.9546 3.9790 39 1 0.8121 -1.6445 2.4177 40 1 1.0177 -3.1783 3.3185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563353467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:18:13 Heat of formation + Delta-G solvation = -129.305267 kcal Electronic energy + Delta-G solvation = -24828.357460 eV Core-core repulsion = 21348.290597 eV Total energy + Delta-G solvation = -3480.066863 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95640 -38.63696 -38.04073 -37.09002 -36.52563 -35.94709 -33.29592 -31.07346 -29.46615 -28.75154 -26.87504 -26.08182 -22.71322 -21.69973 -21.29400 -21.05952 -19.80306 -18.74465 -17.97511 -17.46355 -17.35546 -17.06953 -16.38215 -16.19533 -15.87185 -15.46680 -15.25311 -14.96299 -14.68925 -14.47236 -14.11063 -13.49506 -13.27034 -13.25596 -13.17157 -13.05389 -12.98833 -12.66562 -12.60697 -12.42792 -12.25325 -12.05551 -11.88551 -11.79483 -11.77377 -11.60716 -11.48928 -11.26082 -11.18278 -10.67737 -10.36281 -9.14600 -8.32839 -6.33530 -0.91085 1.42354 1.45610 1.51408 1.59995 2.13690 2.32095 2.66697 2.80123 2.96457 3.23808 3.55792 3.83639 3.86659 3.88274 3.93631 4.11129 4.23112 4.28316 4.59677 4.62042 4.67557 4.74104 4.78236 4.85309 4.87937 4.92668 5.05204 5.09047 5.15406 5.23174 5.26563 5.30482 5.44476 5.44840 5.52965 5.66454 6.12348 6.66718 6.95952 7.55207 8.03147 8.70543 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.007973 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.225589 B = 3510.982388 C = 4247.860950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.025 3.975 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.356 4.356 8 H 0.077 0.923 9 N -0.451 5.451 10 C 0.536 3.464 11 O -0.622 6.622 12 C -0.548 4.548 13 H 0.169 0.831 14 C -0.097 4.097 15 C -0.111 4.111 16 C -0.553 4.553 17 S 2.360 3.640 18 O -0.970 6.970 19 O -0.981 6.981 20 C 0.120 3.880 21 C -0.128 4.128 22 C -0.106 4.106 23 C -0.111 4.111 24 C -0.110 4.110 25 H 0.278 0.722 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.155 0.845 31 H 0.172 0.828 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.952 -0.066 -3.832 3.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.181 4.181 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.484 4.484 8 H 0.095 0.905 9 N -0.170 5.170 10 C 0.324 3.676 11 O -0.509 6.509 12 C -0.660 4.660 13 H 0.186 0.814 14 C -0.136 4.136 15 C -0.149 4.149 16 C -0.687 4.687 17 S 2.548 3.452 18 O -0.967 6.967 19 O -0.979 6.979 20 C 0.016 3.984 21 C -0.167 4.167 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.148 4.148 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.153 0.847 29 H 0.119 0.881 30 H 0.173 0.827 31 H 0.190 0.810 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.404 -0.610 -3.740 3.811 hybrid contribution -0.416 1.053 0.314 1.175 sum -0.820 0.444 -3.427 3.551 Atomic orbital electron populations 1.69951 1.06810 1.29185 1.45137 1.26225 0.96050 1.01992 0.93798 0.85577 0.78895 0.78134 0.79708 1.19387 1.19825 1.18599 1.19253 0.91855 0.82355 1.54985 0.90512 1.43438 1.37061 1.17974 1.18553 1.19439 0.81134 0.82993 0.84014 1.90449 1.49581 1.30545 1.80318 1.30283 1.11705 1.13390 1.10669 0.81400 1.21881 0.90804 1.05069 0.95829 1.22351 1.01766 0.98870 0.91929 1.30457 1.14110 1.10280 1.13877 1.09800 0.80254 0.74866 0.80238 1.93514 1.64069 1.60575 1.78571 1.93504 1.79680 1.41423 1.83245 1.21828 0.96318 0.92383 0.87842 1.22457 0.95079 0.99884 0.99263 1.22248 0.98726 0.97675 0.95704 1.22404 0.93813 0.98167 1.00483 1.22378 0.98301 0.99132 0.95015 0.91218 0.90408 0.89031 0.84731 0.88082 0.82653 0.81035 0.92393 0.91664 0.93328 0.89963 0.90989 0.92366 0.90347 0.93508 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -42.90 11.15 21.66 0.24 -42.66 16 2 C 0.02 1.18 4.01 84.93 0.34 1.52 16 3 Si 0.95 38.43 29.56 68.60 2.03 40.45 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.36 -17.75 5.83 84.04 0.49 -17.26 16 8 H 0.08 3.85 7.52 -2.91 -0.02 3.83 16 9 N -0.45 -22.92 2.29 -609.38 -1.39 -24.32 16 10 C 0.54 27.70 5.39 87.66 0.47 28.17 16 11 O -0.62 -34.45 15.17 -3.08 -0.05 -34.50 16 12 C -0.55 -23.92 2.46 30.24 0.07 -23.85 16 13 H 0.17 7.81 4.51 -2.38 -0.01 7.80 16 14 C -0.10 -3.32 5.90 31.28 0.18 -3.14 16 15 C -0.11 -2.53 6.48 31.59 0.20 -2.33 16 16 C -0.55 -13.35 7.31 72.68 0.53 -12.81 16 17 S 2.36 93.28 5.95 -56.49 -0.34 92.95 16 18 O -0.97 -42.14 18.15 -127.49 -2.31 -44.45 16 19 O -0.98 -46.54 17.28 -127.49 -2.20 -48.74 16 20 C 0.12 5.49 3.35 45.72 0.15 5.65 16 21 C -0.13 -5.07 6.32 31.32 0.20 -4.87 16 22 C -0.11 -3.32 6.83 31.67 0.22 -3.10 16 23 C -0.11 -3.81 6.56 31.88 0.21 -3.61 16 24 C -0.11 -4.44 6.04 31.67 0.19 -4.24 16 25 H 0.28 12.77 8.32 -92.71 -0.77 12.00 16 26 H 0.08 2.86 6.93 -2.39 -0.02 2.84 16 27 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 28 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.16 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.17 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.06 2.84 6.96 -2.39 -0.02 2.82 16 33 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.05 2.11 7.32 -2.39 -0.02 2.09 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.06 2.24 7.18 -2.39 -0.02 2.22 16 38 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.05 2.18 7.83 -2.39 -0.02 2.16 16 40 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -70.76 325.33 0.28 -70.48 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 1.04 Total: 30.64 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 3.27 Total: -39.87 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -1.15 Total: -66.97 kcal Atomic # 8 Polarization: -123.12 SS G_CDS: -4.56 Total: -127.69 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 16 Polarization: 93.28 SS G_CDS: -0.34 Total: 92.95 kcal Total: -70.76 0.28 -70.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563353467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.824 kcal (2) G-P(sol) polarization free energy of solvation -70.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds