Wall clock time and date at job start Fri Apr 10 2020 14:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48496 * 109.47502 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47086 * 300.00056 * 3 2 1 6 6 H 1.48494 * 109.47300 * 59.99685 * 3 2 1 7 7 C 1.37879 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99795 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00122 * 359.97438 * 7 2 1 10 10 S 1.81391 * 109.47313 * 180.02562 * 9 7 2 11 11 O 1.42105 * 108.57942 * 294.48966 * 10 9 7 12 12 O 1.42097 * 108.57959 * 65.51495 * 10 9 7 13 13 C 1.81398 * 101.92304 * 180.02562 * 10 9 7 14 14 H 1.09003 * 109.36000 * 300.00297 * 13 10 9 15 15 C 1.53064 * 109.36092 * 180.27107 * 13 10 9 16 16 C 1.53646 * 108.24505 * 191.18143 * 15 13 10 17 17 H 1.08997 * 109.95912 * 188.41331 * 16 15 13 18 18 C 1.53104 * 108.49629 * 308.70178 * 16 15 13 19 19 C 1.52912 * 109.77948 * 176.56916 * 18 16 15 20 20 C 1.53069 * 109.24757 * 299.37026 * 19 18 16 21 21 C 1.52982 * 109.14849 * 60.92572 * 20 19 18 22 22 C 1.52467 * 109.95234 * 300.38292 * 21 20 19 23 23 H 1.08997 * 108.22997 * 176.61695 * 22 21 20 24 24 N 1.45459 * 111.04555 * 294.63940 * 22 21 20 25 25 C 1.33339 * 123.63358 * 143.93330 * 24 22 21 26 26 O 1.21281 * 118.12050 * 177.34362 * 25 24 22 27 27 H 0.97002 * 119.99619 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46853 * 59.99802 * 9 7 2 29 29 H 1.09003 * 109.47076 * 300.01046 * 9 7 2 30 30 H 1.09002 * 109.71118 * 310.87428 * 15 13 10 31 31 H 1.09001 * 109.70779 * 71.50255 * 15 13 10 32 32 H 1.09011 * 109.41668 * 296.65901 * 18 16 15 33 33 H 1.08997 * 109.42279 * 56.47045 * 18 16 15 34 34 H 1.09002 * 109.50870 * 59.30663 * 19 18 16 35 35 H 1.09004 * 109.50576 * 179.43992 * 19 18 16 36 36 H 1.09000 * 109.51840 * 180.82230 * 20 19 18 37 37 H 1.08996 * 109.52632 * 300.95918 * 20 19 18 38 38 H 1.08998 * 109.38895 * 60.53228 * 21 20 19 39 39 H 1.09001 * 109.38501 * 180.33837 * 21 20 19 40 40 H 0.97001 * 118.15555 * 323.80991 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 8 3.1485 -3.8592 -1.2263 12 8 3.1484 -3.8592 1.2252 13 6 1.3244 -5.3161 -0.0013 14 1 0.6962 -5.2894 0.8891 15 6 2.1601 -6.5984 0.0054 16 6 1.2246 -7.7838 -0.2783 17 1 1.7591 -8.7226 -0.1336 18 6 0.0361 -7.7056 0.6837 19 6 -0.9580 -8.8244 0.3700 20 6 -1.4683 -8.6587 -1.0636 21 6 -0.2873 -8.7567 -2.0310 22 6 0.7325 -7.6671 -1.7192 23 1 1.5869 -7.7997 -2.3829 24 7 0.1784 -6.3458 -1.9701 25 6 0.4553 -5.2751 -1.2251 26 8 -0.0240 -4.2106 -1.5537 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5570 0.8896 30 1 2.9266 -6.5418 -0.7675 31 1 2.6296 -6.7261 0.9808 32 1 0.3916 -7.8135 1.7085 33 1 -0.4577 -6.7403 0.5721 34 1 -0.4628 -9.7901 0.4709 35 1 -1.7972 -8.7706 1.0636 36 1 -2.1885 -9.4458 -1.2870 37 1 -1.9474 -7.6855 -1.1696 38 1 0.1844 -9.7340 -1.9284 39 1 -0.6456 -8.6333 -3.0530 40 1 -0.4246 -6.2376 -2.7222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905268270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:19:54 Heat of formation + Delta-G solvation = -149.786451 kcal Electronic energy + Delta-G solvation = -24072.168188 eV Core-core repulsion = 20591.213195 eV Total energy + Delta-G solvation = -3480.954994 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.14417 -39.34612 -37.88489 -37.01161 -35.49569 -35.27763 -34.92602 -31.02577 -30.77228 -30.52283 -26.25586 -25.18951 -23.82148 -23.36898 -21.59388 -20.39228 -19.41139 -18.74414 -18.17578 -17.91308 -17.65177 -17.05614 -16.63398 -16.38399 -16.00269 -15.71410 -15.42367 -14.91641 -14.83902 -14.56044 -14.32583 -13.94798 -13.78926 -13.40513 -13.35594 -13.16446 -13.10968 -13.01388 -12.76769 -12.68419 -12.54241 -12.47151 -11.97252 -11.85664 -11.72729 -11.44564 -11.31560 -11.17293 -10.90349 -10.78560 -10.64982 -10.04675 -8.36358 -6.54059 -0.88595 1.34881 1.36830 1.41155 1.51374 1.89756 2.15668 2.31247 2.73426 2.95720 3.03266 3.28537 3.48023 3.57973 3.60178 3.93095 4.01962 4.18536 4.24868 4.32659 4.47276 4.52913 4.63755 4.71936 4.74199 4.80196 4.89612 5.01785 5.07095 5.12959 5.23588 5.26968 5.32615 5.35614 5.39947 5.53838 5.70707 5.86359 6.15214 6.57664 7.07366 7.14695 8.76667 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.027921 B = 0.004605 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.575486 B = 6079.088762 C = 6420.286353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.564 4.564 8 H 0.060 0.940 9 C -0.423 4.423 10 S 2.425 3.575 11 O -0.980 6.980 12 O -0.974 6.974 13 C -0.592 4.592 14 H 0.184 0.816 15 C -0.115 4.115 16 C -0.080 4.080 17 H 0.140 0.860 18 C -0.131 4.131 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.118 4.118 22 C 0.127 3.873 23 H 0.087 0.913 24 N -0.686 5.686 25 C 0.540 3.460 26 O -0.576 6.576 27 H 0.272 0.728 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.041 0.959 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.297 -24.151 -1.258 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.182 4.182 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.603 4.603 8 H 0.078 0.922 9 C -0.557 4.557 10 S 2.613 3.387 11 O -0.978 6.978 12 O -0.971 6.971 13 C -0.703 4.703 14 H 0.201 0.799 15 C -0.154 4.154 16 C -0.099 4.099 17 H 0.157 0.843 18 C -0.168 4.168 19 C -0.151 4.151 20 C -0.162 4.162 21 C -0.156 4.156 22 C 0.024 3.976 23 H 0.105 0.895 24 N -0.338 5.338 25 C 0.324 3.676 26 O -0.457 6.457 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.127 0.873 39 H 0.096 0.904 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -1.591 -23.582 -1.245 23.669 hybrid contribution -0.970 1.351 -0.165 1.672 sum -2.562 -22.231 -1.409 22.422 Atomic orbital electron populations 1.70102 1.07642 1.28511 1.48479 1.25911 0.95999 1.03212 0.93101 0.85381 0.79047 0.77786 0.78915 1.18669 1.19175 1.18687 1.20857 0.92797 0.91055 1.55598 0.92166 1.27807 1.10501 1.09868 1.07517 1.07795 0.78679 0.78441 0.73804 1.93414 1.71122 1.86580 1.46643 1.93433 1.70728 1.86647 1.46275 1.30393 1.14169 1.19666 1.06056 0.79850 1.21898 0.97405 0.90084 1.05971 1.21544 0.95858 0.98914 0.93576 0.84259 1.21804 0.96014 0.99222 0.99791 1.21508 0.98375 0.98875 0.96362 1.21571 0.97917 1.01517 0.95215 1.21750 0.95355 0.98447 1.00013 1.21199 0.97652 0.81255 0.97540 0.89479 1.45269 1.48772 1.08568 1.31152 1.18826 0.80885 0.84399 0.83473 1.90888 1.54015 1.29465 1.71321 0.91921 0.87402 0.91114 0.89757 0.86880 0.90107 0.93999 0.89512 0.92160 0.90374 0.93991 0.87275 0.90357 0.75277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.65 13.29 21.45 0.28 -56.36 16 2 C 0.02 1.21 5.46 84.65 0.46 1.67 16 3 Si 0.97 46.09 29.54 68.60 2.03 48.12 16 4 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.56 -35.01 9.13 25.60 0.23 -34.78 16 8 H 0.06 3.69 7.71 -2.91 -0.02 3.67 16 9 C -0.42 -23.71 4.92 71.23 0.35 -23.36 16 10 S 2.42 110.79 4.04 -56.49 -0.23 110.56 16 11 O -0.98 -49.76 17.97 -127.37 -2.29 -52.05 16 12 O -0.97 -47.12 18.10 -127.37 -2.31 -49.42 16 13 C -0.59 -18.89 2.19 29.70 0.07 -18.83 16 14 H 0.18 5.07 6.80 -2.39 -0.02 5.05 16 15 C -0.12 -2.57 4.97 30.83 0.15 -2.42 16 16 C -0.08 -1.15 2.72 -10.64 -0.03 -1.18 16 17 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 18 C -0.13 -2.02 4.55 30.60 0.14 -1.89 16 19 C -0.11 -1.30 5.92 30.59 0.18 -1.12 16 20 C -0.12 -1.46 5.84 30.61 0.18 -1.28 16 21 C -0.12 -1.08 5.54 30.41 0.17 -0.91 16 22 C 0.13 1.91 2.89 44.91 0.13 2.04 16 23 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 24 N -0.69 -16.35 4.66 -448.45 -2.09 -18.44 16 25 C 0.54 18.43 6.31 87.71 0.55 18.98 16 26 O -0.58 -25.96 13.92 -3.03 -0.04 -26.00 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.11 6.44 5.33 -2.39 -0.01 6.43 16 29 H 0.07 3.91 8.14 -2.39 -0.02 3.90 16 30 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 31 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.04 0.88 5.44 -2.39 -0.01 0.87 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.04 0.70 7.88 -2.39 -0.02 0.68 16 38 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.41 8.91 8.68 -92.71 -0.80 8.11 16 Total: -1.00 -84.99 322.93 -1.81 -86.80 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.25 Total: 19.85 kcal Atomic # 6 Polarization: -65.64 SS G_CDS: 2.59 Total: -63.06 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -1.81 Total: -74.80 kcal Atomic # 8 Polarization: -122.84 SS G_CDS: -4.64 Total: -127.48 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 110.79 SS G_CDS: -0.23 Total: 110.56 kcal Total: -84.99 -1.81 -86.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905268270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.987 kcal (2) G-P(sol) polarization free energy of solvation -84.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds