Wall clock time and date at job start Fri Apr 10 2020 14:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35309 * 126.12968 * 2 1 4 4 S 1.76198 * 126.04133 * 0.02798 * 3 2 1 5 5 O 1.42098 * 106.40559 * 177.67412 * 4 3 2 6 6 O 1.42099 * 106.40344 * 310.59238 * 4 3 2 7 7 N 1.65607 * 107.21736 * 64.13155 * 4 3 2 8 8 C 1.46493 * 120.00061 * 64.45473 * 7 4 3 9 9 C 1.52995 * 109.47486 * 164.67029 * 8 7 4 10 10 C 1.53004 * 109.47377 * 300.00379 * 9 8 7 11 11 C 1.52996 * 109.46949 * 60.00141 * 9 8 7 12 12 C 1.50700 * 109.47245 * 180.02562 * 9 8 7 13 13 H 1.07995 * 120.00332 * 3.35152 * 12 9 8 14 14 C 1.37884 * 119.99719 * 183.34944 * 12 9 8 15 15 N 1.31516 * 119.99518 * 192.09765 * 14 12 9 16 16 Si 1.86792 * 120.00089 * 12.10224 * 14 12 9 17 17 H 1.48503 * 109.47491 * 84.80455 * 16 14 12 18 18 H 1.48506 * 109.47370 * 204.80197 * 16 14 12 19 19 H 1.48503 * 109.47397 * 324.80164 * 16 14 12 20 20 C 1.39871 * 107.91927 * 179.90409 * 3 2 1 21 21 N 1.30834 * 108.20593 * 0.36034 * 20 3 2 22 22 N 1.34951 * 126.12303 * 180.30445 * 2 1 3 23 23 C 1.46499 * 126.03785 * 359.94913 * 22 2 1 24 24 H 1.08994 * 109.47312 * 265.47703 * 1 2 3 25 25 H 1.09004 * 109.46812 * 25.47663 * 1 2 3 26 26 H 1.08996 * 109.47500 * 145.47418 * 1 2 3 27 27 H 0.96997 * 119.99770 * 244.45670 * 7 4 3 28 28 H 1.09008 * 109.47491 * 284.67451 * 8 7 4 29 29 H 1.09003 * 109.47128 * 44.67218 * 8 7 4 30 30 H 1.09006 * 109.46926 * 70.08027 * 10 9 8 31 31 H 1.08996 * 109.47366 * 190.08414 * 10 9 8 32 32 H 1.09003 * 109.46421 * 310.08649 * 10 9 8 33 33 H 1.09004 * 109.47657 * 60.00116 * 11 9 8 34 34 H 1.08998 * 109.47623 * 180.02562 * 11 9 8 35 35 H 1.09004 * 109.47676 * 300.00395 * 11 9 8 36 36 H 0.97004 * 119.99528 * 180.02562 * 15 14 12 37 37 H 1.08006 * 125.89765 * 180.14187 * 20 3 2 38 38 H 1.09001 * 109.47598 * 89.99702 * 23 22 2 39 39 H 1.09006 * 109.47057 * 209.99804 * 23 22 2 40 40 H 1.09000 * 109.47073 * 329.99504 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 16 1.7653 2.7702 0.0007 5 8 2.9391 3.5693 0.0558 6 8 0.7977 2.8810 -1.0340 7 7 0.9588 3.0252 1.4244 8 6 1.6755 2.9340 2.6988 9 6 0.8323 3.5713 3.8050 10 6 0.5760 5.0416 3.4680 11 6 -0.5033 2.8335 3.9172 12 6 1.5700 3.4780 5.1158 13 1 2.5653 3.0600 5.1468 14 6 0.9741 3.9264 6.2756 15 7 1.6896 4.0687 7.3698 16 14 -0.8492 4.3317 6.2924 17 1 -1.6298 3.0919 6.5346 18 1 -1.1286 5.3114 7.3730 19 1 -1.2390 4.9143 4.9832 20 6 3.6335 0.6558 0.0022 21 7 3.6334 -0.6526 -0.0043 22 7 2.3026 -1.0901 -0.0058 23 6 1.8538 -2.4846 -0.0122 24 1 -0.3633 -0.0810 1.0244 25 1 -0.3633 0.9278 -0.4421 26 1 -0.3634 -0.8466 -0.5824 27 1 0.0118 3.2348 1.4145 28 1 1.8581 1.8865 2.9389 29 1 2.6271 3.4596 2.6189 30 1 -0.1069 5.1065 2.6210 31 1 0.1338 5.5402 4.3305 32 1 1.5188 5.5253 3.2125 33 1 -0.3209 1.7860 4.1573 34 1 -1.1043 3.2877 4.7050 35 1 -1.0367 2.9013 2.9690 36 1 1.2703 4.3838 8.1859 37 1 4.5085 1.2890 0.0050 38 1 1.7417 -2.8256 -1.0414 39 1 2.5901 -3.1056 0.4982 40 1 0.8957 -2.5603 0.5021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315486918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:17:19 Heat of formation + Delta-G solvation = -14.643685 kcal Electronic energy + Delta-G solvation = -23672.802138 eV Core-core repulsion = 20230.000125 eV Total energy + Delta-G solvation = -3442.802013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.42002 -38.89803 -38.15650 -36.83063 -34.89441 -34.60313 -33.33304 -33.01828 -28.39724 -27.94006 -27.72891 -27.27023 -26.46120 -22.97598 -21.51019 -20.94256 -20.27063 -18.77529 -18.32421 -17.90910 -17.06277 -16.96625 -16.73516 -16.54229 -15.64962 -15.38457 -15.29834 -14.74187 -14.44550 -14.31060 -14.12614 -14.07518 -13.72095 -13.68922 -13.52976 -13.31954 -13.21126 -13.08385 -13.04639 -12.93795 -12.46468 -12.31986 -11.93378 -11.87051 -11.77173 -11.63442 -10.95239 -10.57089 -10.45091 -10.42876 -10.24310 -10.17426 -8.24061 -6.25306 -0.42656 0.51053 1.19054 1.39664 1.43222 1.43890 1.54887 2.23128 2.40019 2.87013 3.12995 3.31732 3.45467 3.65864 3.96452 4.12536 4.29102 4.34146 4.39094 4.44088 4.53630 4.58356 4.61397 4.63191 4.81928 4.91018 4.96173 4.98317 5.02711 5.10922 5.17361 5.30286 5.34870 5.58494 5.79990 5.83656 5.88079 6.23593 6.34826 6.40039 6.80785 7.40239 8.92828 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.004946 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.840682 B = 5659.932081 C = 6049.857122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.213 3.787 3 C -0.836 4.836 4 S 2.744 3.256 5 O -0.996 6.996 6 O -0.982 6.982 7 N -1.104 6.104 8 C 0.155 3.845 9 C 0.028 3.972 10 C -0.146 4.146 11 C -0.150 4.150 12 C -0.510 4.510 13 H 0.033 0.967 14 C 0.015 3.985 15 N -0.950 5.950 16 Si 0.945 3.055 17 H -0.279 1.279 18 H -0.323 1.323 19 H -0.209 1.209 20 C 0.122 3.878 21 N -0.323 5.323 22 N -0.364 5.364 23 C 0.078 3.922 24 H 0.119 0.881 25 H 0.101 0.899 26 H 0.118 0.882 27 H 0.424 0.576 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.029 0.971 35 H 0.078 0.922 36 H 0.262 0.738 37 H 0.205 0.795 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.345 -11.907 -16.831 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.077 3.923 3 C -0.936 4.936 4 S 2.834 3.166 5 O -0.986 6.986 6 O -0.972 6.972 7 N -0.867 5.867 8 C 0.029 3.971 9 C 0.026 3.974 10 C -0.203 4.203 11 C -0.206 4.206 12 C -0.549 4.549 13 H 0.052 0.948 14 C -0.182 4.182 15 N -0.589 5.589 16 Si 0.776 3.224 17 H -0.207 1.207 18 H -0.253 1.253 19 H -0.133 1.133 20 C -0.068 4.068 21 N -0.142 5.142 22 N -0.142 5.142 23 C -0.062 4.062 24 H 0.138 0.862 25 H 0.120 0.880 26 H 0.137 0.863 27 H 0.262 0.738 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.221 0.779 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.282 -12.601 -17.347 22.342 hybrid contribution -0.632 0.361 1.172 1.379 sum -6.914 -12.239 -16.175 21.430 Atomic orbital electron populations 1.21248 0.83467 1.07571 1.06791 1.21419 0.96134 0.85366 0.89376 1.31248 1.01847 1.23398 1.37100 0.99960 0.72270 0.72718 0.71687 1.93510 1.50944 1.67382 1.86792 1.93517 1.61646 1.87135 1.54951 1.55264 1.22945 1.87422 1.21066 1.21033 0.94531 1.00037 0.81502 1.18627 0.93382 0.93046 0.92336 1.22255 1.00432 0.97514 1.00107 1.22313 0.97089 1.00627 1.00616 1.21110 1.01644 1.40302 0.91803 0.94821 1.25843 1.02650 0.94645 0.95103 1.70110 1.37939 1.48338 1.02556 0.86315 0.80746 0.77420 0.77968 1.20663 1.25278 1.13302 1.23770 0.96704 0.92235 0.94042 1.77346 0.97808 1.13004 1.25993 1.49338 1.03387 1.08024 1.53472 1.22473 1.02976 0.75074 1.05629 0.86244 0.88003 0.86337 0.73808 0.92075 0.92450 0.91856 0.94064 0.94169 0.92435 0.95288 0.90315 0.92921 0.77880 0.88252 0.88474 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.66 71.24 0.69 -1.06 16 2 C 0.21 4.63 6.93 41.40 0.29 4.92 16 3 C -0.84 -22.58 6.11 21.99 0.13 -22.44 16 4 S 2.74 79.62 5.49 -56.49 -0.31 79.31 16 5 O -1.00 -36.03 17.25 -128.00 -2.21 -38.24 16 6 O -0.98 -29.56 16.60 -128.00 -2.12 -31.69 16 7 N -1.10 -30.37 5.44 -187.50 -1.02 -31.39 16 8 C 0.16 5.43 5.03 86.38 0.43 5.87 16 9 C 0.03 1.15 0.51 -52.93 -0.03 1.12 16 10 C -0.15 -5.62 7.53 71.98 0.54 -5.08 16 11 C -0.15 -5.13 7.48 71.98 0.54 -4.59 16 12 C -0.51 -27.02 8.62 25.60 0.22 -26.80 16 13 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 14 C 0.01 0.81 5.34 84.66 0.45 1.26 16 15 N -0.95 -58.22 13.96 21.45 0.30 -57.92 16 16 Si 0.95 42.35 22.76 68.60 1.56 43.91 16 17 H -0.28 -12.03 7.09 99.48 0.71 -11.32 16 18 H -0.32 -15.20 7.11 99.48 0.71 -14.49 16 19 H -0.21 -8.03 4.67 99.48 0.46 -7.56 16 20 C 0.12 3.46 11.70 85.24 1.00 4.45 16 21 N -0.32 -9.03 12.58 -57.02 -0.72 -9.75 16 22 N -0.36 -7.84 4.01 -356.03 -1.43 -9.27 16 23 C 0.08 0.82 11.14 127.77 1.42 2.24 16 24 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.10 1.50 6.45 -2.39 -0.02 1.49 16 26 H 0.12 0.78 7.93 -2.39 -0.02 0.76 16 27 H 0.42 9.57 6.54 -96.75 -0.63 8.94 16 28 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.06 2.22 7.76 -2.39 -0.02 2.20 16 30 H 0.06 1.95 7.50 -2.38 -0.02 1.94 16 31 H 0.04 1.68 4.43 -2.39 -0.01 1.67 16 32 H 0.04 1.59 8.11 -2.39 -0.02 1.57 16 33 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.03 1.07 2.12 -2.39 -0.01 1.07 16 35 H 0.08 1.98 6.60 -2.39 -0.02 1.96 16 36 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.20 5.16 8.06 -2.91 -0.02 5.14 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.12 0.55 7.76 -2.39 -0.02 0.53 16 Total: -1.00 -77.99 327.29 -0.07 -78.06 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.19 Total: 17.08 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 5.69 Total: -40.12 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -2.87 Total: -108.32 kcal Atomic # 8 Polarization: -65.59 SS G_CDS: -4.33 Total: -69.92 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.56 Total: 43.91 kcal Atomic # 16 Polarization: 79.62 SS G_CDS: -0.31 Total: 79.31 kcal Total: -77.99 -0.07 -78.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315486918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.413 kcal (2) G-P(sol) polarization free energy of solvation -77.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds