Wall clock time and date at job start Fri Apr 10 2020 14:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.69074 * 2 1 4 4 C 1.52722 * 109.65810 * 239.75307 * 2 1 3 5 5 N 1.46372 * 109.77051 * 182.65329 * 4 2 1 6 6 C 1.34781 * 119.64614 * 245.08116 * 5 4 2 7 7 O 1.21580 * 119.99994 * 4.80155 * 6 5 4 8 8 N 1.34772 * 120.00085 * 184.79852 * 6 5 4 9 9 C 1.46502 * 120.00359 * 174.92087 * 8 6 5 10 10 C 1.50696 * 109.47092 * 179.97438 * 9 8 6 11 11 O 1.21289 * 120.00486 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99957 * 179.97438 * 10 9 8 13 13 C 1.37092 * 120.00090 * 180.02562 * 12 10 9 14 14 H 1.07994 * 120.00219 * 359.97438 * 13 12 10 15 15 C 1.38958 * 119.99861 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99901 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99855 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47220 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46694 * 120.00048 * 17 15 13 20 20 H 1.48503 * 109.47450 * 240.00016 * 17 15 13 21 21 C 1.46378 * 120.70789 * 64.81262 * 5 4 2 22 22 C 1.53234 * 109.48772 * 295.18936 * 21 5 4 23 23 S 1.81737 * 108.80262 * 57.65121 * 22 21 5 24 24 H 1.08999 * 109.46655 * 299.65314 * 1 2 3 25 25 H 1.08992 * 109.46997 * 59.65819 * 1 2 3 26 26 H 1.09000 * 109.46828 * 179.66247 * 1 2 3 27 27 H 1.09008 * 109.47339 * 180.34669 * 3 2 1 28 28 H 1.09000 * 109.47115 * 300.34271 * 3 2 1 29 29 H 1.09001 * 109.47349 * 60.34501 * 3 2 1 30 30 H 1.09004 * 109.32532 * 62.56180 * 4 2 1 31 31 H 1.09001 * 109.32445 * 302.74715 * 4 2 1 32 32 H 0.97004 * 120.00198 * 354.92232 * 8 6 5 33 33 H 1.09003 * 109.46539 * 59.99967 * 9 8 6 34 34 H 1.09001 * 109.46896 * 300.00382 * 9 8 6 35 35 H 0.97001 * 119.99499 * 0.02562 * 12 10 9 36 36 H 0.96997 * 120.00083 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.46321 * 55.18833 * 21 5 4 38 38 H 1.09001 * 109.47033 * 175.17390 * 21 5 4 39 39 H 1.09003 * 109.58547 * 177.45131 * 22 21 5 40 40 H 1.09009 * 109.57854 * 297.71642 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0456 1.4405 0.0000 4 6 2.0438 -0.7245 -1.2424 5 7 3.5061 -0.7812 -1.2132 6 6 4.2177 -0.1240 -2.1504 7 8 3.6495 0.5821 -2.9609 8 7 5.5590 -0.2493 -2.1890 9 6 6.3221 0.3743 -3.2730 10 6 7.7893 0.0869 -3.0843 11 8 8.1611 -0.5742 -2.1378 12 7 8.6885 0.5636 -3.9679 13 6 10.0232 0.3017 -3.7966 14 1 10.3543 -0.2862 -2.9534 15 6 10.9503 0.7936 -4.7074 16 7 10.5476 1.5103 -5.7326 17 14 12.7690 0.4374 -4.4735 18 1 12.9593 -0.3840 -3.2511 19 1 13.2837 -0.3042 -5.6527 20 1 13.5098 1.7166 -4.3312 21 6 4.2041 -1.5394 -0.1737 22 6 3.9338 -0.9014 1.1930 23 16 2.1392 -0.8650 1.4778 24 1 -0.3632 0.5084 0.8931 25 1 -0.3633 0.5191 -0.8868 26 1 -0.3633 -1.0277 -0.0061 27 1 3.1356 1.4364 -0.0062 28 1 1.6792 1.9575 -0.8869 29 1 1.6893 1.9540 0.8931 30 1 1.7188 -0.1873 -2.1335 31 1 1.6412 -1.7372 -1.2618 32 1 6.0192 -0.7524 -1.4990 33 1 6.1586 1.4519 -3.2592 34 1 5.9921 -0.0311 -4.2295 35 1 8.3912 1.0920 -4.7251 36 1 11.1947 1.8540 -6.3682 37 1 3.8449 -2.5685 -0.1716 38 1 5.2755 -1.5292 -0.3740 39 1 4.4156 -1.4908 1.9732 40 1 4.3286 0.1146 1.2064 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336395585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:19:08 Heat of formation + Delta-G solvation = -60.136482 kcal Electronic energy + Delta-G solvation = -22728.331192 eV Core-core repulsion = 19283.556464 eV Total energy + Delta-G solvation = -3444.774728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.47924 -38.41606 -37.07907 -35.09031 -34.36262 -33.59682 -31.41369 -30.85917 -28.21969 -27.62363 -26.14072 -24.39330 -23.50901 -20.96625 -19.85889 -19.75338 -18.59436 -17.92799 -16.71228 -16.19115 -15.79877 -15.53477 -15.22043 -14.80595 -14.71101 -14.51583 -14.11843 -14.01272 -13.80798 -13.56217 -13.33510 -12.93147 -12.47215 -12.33889 -12.22298 -12.12089 -11.96919 -11.66284 -11.60826 -11.44962 -11.16901 -11.01520 -10.43570 -10.35603 -10.05877 -9.94053 -9.68068 -9.10091 -8.67766 -8.67273 -8.13556 -7.87853 -6.54630 -3.96704 1.45687 2.23771 2.57462 3.07708 3.20411 3.21380 3.26934 3.70696 3.84398 4.10091 4.33324 4.51936 4.62367 4.75824 4.77049 4.82962 4.99875 5.14127 5.23146 5.34912 5.36530 5.46467 5.50398 5.55512 5.61177 5.66616 5.80188 5.84984 5.94994 6.02106 6.03834 6.33236 6.65687 6.84874 7.43218 7.89084 8.02328 8.41266 8.64455 9.01399 9.35849 9.83340 10.62275 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.035059 B = 0.002925 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.471393 B = 9571.160559 C =10050.054337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.042 4.042 3 C -0.135 4.135 4 C 0.138 3.862 5 N -0.632 5.632 6 C 0.707 3.293 7 O -0.590 6.590 8 N -0.724 5.724 9 C 0.127 3.873 10 C 0.428 3.572 11 O -0.599 6.599 12 N -0.548 5.548 13 C -0.305 4.305 14 H 0.106 0.894 15 C 0.026 3.974 16 N -0.894 5.894 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.108 3.892 22 C -0.102 4.102 23 S -0.254 6.254 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.406 0.594 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.396 0.604 36 H 0.274 0.726 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.179 -3.463 10.122 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.153 4.153 3 C -0.194 4.194 4 C 0.012 3.988 5 N -0.370 5.370 6 C 0.408 3.592 7 O -0.468 6.468 8 N -0.384 5.384 9 C -0.002 4.002 10 C 0.214 3.786 11 O -0.486 6.486 12 N -0.183 5.183 13 C -0.434 4.434 14 H 0.124 0.876 15 C -0.177 4.177 16 N -0.534 5.534 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.017 4.017 22 C -0.252 4.252 23 S -0.027 6.027 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.230 0.770 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.750 -3.722 10.847 21.133 hybrid contribution 1.791 0.463 -0.985 2.095 sum -15.960 -3.260 9.862 19.042 Atomic orbital electron populations 1.21608 0.90669 1.03072 1.03097 1.23102 0.99249 0.98251 0.94727 1.21993 1.01561 0.93225 1.02579 1.21481 0.78547 1.00904 0.97818 1.47022 1.06148 1.53935 1.29869 1.15781 0.81741 0.80147 0.81482 1.90893 1.70075 1.43017 1.42812 1.45027 1.04595 1.58070 1.30681 1.20815 0.90532 0.98730 0.90094 1.19731 0.86816 0.86145 0.85935 1.90483 1.80242 1.44678 1.33209 1.41792 1.06560 1.46068 1.23833 1.19775 0.80933 1.31868 1.10856 0.87617 1.25335 1.00960 0.96203 0.95220 1.69620 1.35886 1.34556 1.13321 0.85757 0.81516 0.78271 0.78543 1.19125 1.20589 1.20590 1.21726 0.98376 0.95798 0.85815 1.23889 0.94833 1.05491 1.00941 1.86773 1.06272 1.76992 1.32622 0.91433 0.90733 0.91485 0.92461 0.91339 0.91794 0.87590 0.90380 0.75332 0.89926 0.90000 0.77008 0.91601 0.89598 0.88570 0.86542 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 8.52 37.16 0.32 -0.63 16 2 C -0.04 -0.41 0.88 -90.76 -0.08 -0.49 16 3 C -0.13 -1.44 8.27 37.16 0.31 -1.13 16 4 C 0.14 1.48 4.88 -4.25 -0.02 1.46 16 5 N -0.63 -7.82 2.14 -179.65 -0.38 -8.21 16 6 C 0.71 11.27 8.13 -86.92 -0.71 10.57 16 7 O -0.59 -11.03 15.67 5.29 0.08 -10.94 16 8 N -0.72 -12.02 5.43 -66.41 -0.36 -12.38 16 9 C 0.13 2.32 6.16 -5.19 -0.03 2.29 16 10 C 0.43 9.66 7.85 -10.99 -0.09 9.57 16 11 O -0.60 -15.00 15.24 5.55 0.08 -14.91 16 12 N -0.55 -13.41 5.29 -10.97 -0.06 -13.46 16 13 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 14 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 15 C 0.03 0.67 5.50 -17.46 -0.10 0.57 16 16 N -0.89 -23.65 13.05 55.50 0.72 -22.93 16 17 Si 0.93 20.32 29.55 -169.99 -5.02 15.30 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 C 0.11 1.11 6.23 -3.99 -0.02 1.08 16 22 C -0.10 -0.97 6.26 37.28 0.23 -0.74 16 23 S -0.25 -2.56 21.09 -107.50 -2.27 -4.83 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.72 6.44 -51.92 -0.33 0.39 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.11 1.27 6.90 -51.93 -0.36 0.91 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.41 6.56 4.79 -40.82 -0.20 6.36 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 36 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 1.03 5.41 -51.93 -0.28 0.75 16 39 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.09 0.93 7.36 -51.92 -0.38 0.55 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -30.64 336.82 -8.07 -38.71 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -5.61 Total: 14.36 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: -0.33 Total: 14.22 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.08 Total: -56.98 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: 0.17 Total: -25.86 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.27 Total: -4.83 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.64 -8.07 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336395585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.422 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds