Wall clock time and date at job start Fri Apr 10 2020 14:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.69074 * 2 1 4 4 C 1.52722 * 109.65810 * 239.75307 * 2 1 3 5 5 N 1.46372 * 109.77051 * 182.65329 * 4 2 1 6 6 C 1.34781 * 119.64614 * 245.08116 * 5 4 2 7 7 O 1.21580 * 119.99994 * 4.80155 * 6 5 4 8 8 N 1.34772 * 120.00085 * 184.79852 * 6 5 4 9 9 C 1.46502 * 120.00359 * 174.92087 * 8 6 5 10 10 C 1.50696 * 109.47092 * 179.97438 * 9 8 6 11 11 O 1.21289 * 120.00486 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99957 * 179.97438 * 10 9 8 13 13 C 1.37092 * 120.00090 * 180.02562 * 12 10 9 14 14 H 1.07994 * 120.00219 * 359.97438 * 13 12 10 15 15 C 1.38958 * 119.99861 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99901 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99855 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47220 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46694 * 120.00048 * 17 15 13 20 20 H 1.48503 * 109.47450 * 240.00016 * 17 15 13 21 21 C 1.46378 * 120.70789 * 64.81262 * 5 4 2 22 22 C 1.53234 * 109.48772 * 295.18936 * 21 5 4 23 23 S 1.81737 * 108.80262 * 57.65121 * 22 21 5 24 24 H 1.08999 * 109.46655 * 299.65314 * 1 2 3 25 25 H 1.08992 * 109.46997 * 59.65819 * 1 2 3 26 26 H 1.09000 * 109.46828 * 179.66247 * 1 2 3 27 27 H 1.09008 * 109.47339 * 180.34669 * 3 2 1 28 28 H 1.09000 * 109.47115 * 300.34271 * 3 2 1 29 29 H 1.09001 * 109.47349 * 60.34501 * 3 2 1 30 30 H 1.09004 * 109.32532 * 62.56180 * 4 2 1 31 31 H 1.09001 * 109.32445 * 302.74715 * 4 2 1 32 32 H 0.97004 * 120.00198 * 354.92232 * 8 6 5 33 33 H 1.09003 * 109.46539 * 59.99967 * 9 8 6 34 34 H 1.09001 * 109.46896 * 300.00382 * 9 8 6 35 35 H 0.97001 * 119.99499 * 0.02562 * 12 10 9 36 36 H 0.96997 * 120.00083 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.46321 * 55.18833 * 21 5 4 38 38 H 1.09001 * 109.47033 * 175.17390 * 21 5 4 39 39 H 1.09003 * 109.58547 * 177.45131 * 22 21 5 40 40 H 1.09009 * 109.57854 * 297.71642 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0456 1.4405 0.0000 4 6 2.0438 -0.7245 -1.2424 5 7 3.5061 -0.7812 -1.2132 6 6 4.2177 -0.1240 -2.1504 7 8 3.6495 0.5821 -2.9609 8 7 5.5590 -0.2493 -2.1890 9 6 6.3221 0.3743 -3.2730 10 6 7.7893 0.0869 -3.0843 11 8 8.1611 -0.5742 -2.1378 12 7 8.6885 0.5636 -3.9679 13 6 10.0232 0.3017 -3.7966 14 1 10.3543 -0.2862 -2.9534 15 6 10.9503 0.7936 -4.7074 16 7 10.5476 1.5103 -5.7326 17 14 12.7690 0.4374 -4.4735 18 1 12.9593 -0.3840 -3.2511 19 1 13.2837 -0.3042 -5.6527 20 1 13.5098 1.7166 -4.3312 21 6 4.2041 -1.5394 -0.1737 22 6 3.9338 -0.9014 1.1930 23 16 2.1392 -0.8650 1.4778 24 1 -0.3632 0.5084 0.8931 25 1 -0.3633 0.5191 -0.8868 26 1 -0.3633 -1.0277 -0.0061 27 1 3.1356 1.4364 -0.0062 28 1 1.6792 1.9575 -0.8869 29 1 1.6893 1.9540 0.8931 30 1 1.7188 -0.1873 -2.1335 31 1 1.6412 -1.7372 -1.2618 32 1 6.0192 -0.7524 -1.4990 33 1 6.1586 1.4519 -3.2592 34 1 5.9921 -0.0311 -4.2295 35 1 8.3912 1.0920 -4.7251 36 1 11.1947 1.8540 -6.3682 37 1 3.8449 -2.5685 -0.1716 38 1 5.2755 -1.5292 -0.3740 39 1 4.4156 -1.4908 1.9732 40 1 4.3286 0.1146 1.2064 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336395585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:19:07 Heat of formation + Delta-G solvation = -80.116101 kcal Electronic energy + Delta-G solvation = -22729.197574 eV Core-core repulsion = 19283.556464 eV Total energy + Delta-G solvation = -3445.641110 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68502 -40.18085 -38.17475 -36.35799 -35.92991 -35.01701 -33.37725 -31.77164 -29.63718 -28.37779 -27.40516 -26.07243 -24.46031 -21.86220 -21.46259 -20.98366 -20.20684 -19.53990 -17.80525 -17.41439 -17.29218 -16.85197 -16.44103 -16.12838 -15.99429 -15.97284 -15.42602 -15.14797 -15.00642 -14.86911 -14.32152 -14.03189 -13.75788 -13.59984 -13.55494 -13.13699 -13.08807 -12.93137 -12.91973 -12.45164 -12.43495 -12.22546 -12.11564 -11.84770 -11.58717 -11.33902 -10.77113 -10.57145 -10.37219 -10.10660 -9.78239 -8.69258 -8.51872 -6.01959 0.67432 1.34574 1.40584 1.44171 1.46631 1.57599 1.87165 1.98559 2.26857 2.69612 3.11343 3.15512 3.52232 3.70615 3.81642 3.97373 3.98576 4.15309 4.20506 4.37998 4.42952 4.46459 4.56016 4.62330 4.66103 4.73080 4.80025 4.85719 4.88907 5.12518 5.21292 5.25141 5.37860 5.38859 5.70248 5.91328 6.46678 6.78176 7.02742 7.35947 7.44844 7.92952 8.65269 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.035059 B = 0.002925 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.471393 B = 9571.160559 C =10050.054337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.039 4.039 3 C -0.130 4.130 4 C 0.135 3.865 5 N -0.625 5.625 6 C 0.707 3.293 7 O -0.620 6.620 8 N -0.725 5.725 9 C 0.140 3.860 10 C 0.434 3.566 11 O -0.624 6.624 12 N -0.558 5.558 13 C -0.336 4.336 14 H 0.087 0.913 15 C -0.011 4.011 16 N -0.916 5.916 17 Si 0.997 3.003 18 H -0.269 1.269 19 H -0.271 1.271 20 H -0.272 1.272 21 C 0.107 3.893 22 C -0.099 4.099 23 S -0.256 6.256 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.409 0.591 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.399 0.601 36 H 0.280 0.720 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.136 0.864 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.805 -4.124 10.791 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.150 4.150 3 C -0.189 4.189 4 C 0.011 3.989 5 N -0.361 5.361 6 C 0.408 3.592 7 O -0.500 6.500 8 N -0.386 5.386 9 C 0.012 3.988 10 C 0.221 3.779 11 O -0.512 6.512 12 N -0.194 5.194 13 C -0.465 4.465 14 H 0.105 0.895 15 C -0.211 4.211 16 N -0.556 5.556 17 Si 0.820 3.180 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.197 1.197 21 C -0.018 4.018 22 C -0.248 4.248 23 S -0.028 6.028 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.250 0.750 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.154 0.846 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.411 -4.396 11.542 22.170 hybrid contribution 1.909 0.655 -1.137 2.316 sum -16.502 -3.741 10.405 19.864 Atomic orbital electron populations 1.21613 0.88792 1.03920 1.03727 1.23105 1.00651 0.97183 0.94045 1.21939 1.00011 0.94231 1.02712 1.21644 0.77421 1.01986 0.97882 1.47079 1.06782 1.53000 1.29279 1.15854 0.81349 0.80118 0.81853 1.90871 1.70480 1.44420 1.44273 1.44960 1.04955 1.58254 1.30385 1.20605 0.87593 0.99395 0.91221 1.20370 0.88255 0.84556 0.84725 1.90460 1.81243 1.45429 1.34044 1.41835 1.06317 1.46756 1.24469 1.19769 0.82396 1.33141 1.11185 0.89513 1.26128 1.04802 0.95578 0.94616 1.69684 1.37348 1.34833 1.13743 0.84817 0.76431 0.78311 0.78463 1.19359 1.19655 1.19700 1.21883 0.97935 0.96513 0.85455 1.23879 0.94786 1.05107 1.01016 1.86804 1.06433 1.76808 1.32782 0.91027 0.89888 0.90533 0.94703 0.91929 0.90932 0.88864 0.88479 0.75025 0.89177 0.88901 0.76708 0.91069 0.87629 0.89159 0.84553 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 8.52 71.98 0.61 -0.97 16 2 C -0.04 -0.69 0.88 -10.89 -0.01 -0.70 16 3 C -0.13 -2.69 8.27 71.98 0.60 -2.10 16 4 C 0.14 2.72 4.88 86.31 0.42 3.14 16 5 N -0.63 -14.81 2.14 -840.54 -1.80 -16.61 16 6 C 0.71 22.20 8.13 179.05 1.46 23.65 16 7 O -0.62 -23.05 15.67 -3.97 -0.06 -23.11 16 8 N -0.73 -23.82 5.43 -482.30 -2.62 -26.44 16 9 C 0.14 5.11 6.16 85.63 0.53 5.64 16 10 C 0.43 19.72 7.85 87.66 0.69 20.41 16 11 O -0.62 -31.51 15.24 -3.06 -0.05 -31.56 16 12 N -0.56 -27.70 5.29 -306.99 -1.62 -29.33 16 13 C -0.34 -18.27 9.68 84.04 0.81 -17.46 16 14 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 15 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 16 N -0.92 -48.30 13.05 21.67 0.28 -48.01 16 17 Si 1.00 41.33 29.55 68.60 2.03 43.36 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 21 C 0.11 2.02 6.23 86.48 0.54 2.56 16 22 C -0.10 -1.72 6.26 72.06 0.45 -1.27 16 23 S -0.26 -4.66 21.09 -56.49 -1.19 -5.85 16 24 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.03 0.87 6.44 -2.38 -0.02 0.85 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 2.16 6.90 -2.38 -0.02 2.15 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.41 13.08 4.79 -92.71 -0.44 12.63 16 33 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 36 H 0.28 13.77 8.31 -92.71 -0.77 12.99 16 37 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.09 1.85 5.41 -2.39 -0.01 1.84 16 39 H 0.14 1.83 8.14 -2.39 -0.02 1.82 16 40 H 0.08 1.55 7.36 -2.38 -0.02 1.53 16 Total: -1.00 -64.90 336.82 1.43 -63.47 By element: Atomic # 1 Polarization: 41.35 SS G_CDS: -0.10 Total: 41.25 kcal Atomic # 6 Polarization: 26.26 SS G_CDS: 6.56 Total: 32.83 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -5.76 Total: -120.39 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -0.11 Total: -54.66 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -1.19 Total: -5.85 kcal Total: -64.90 1.43 -63.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336395585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.648 kcal (2) G-P(sol) polarization free energy of solvation -64.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds