Wall clock time and date at job start Fri Apr 10 2020 14:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34827 * 125.49840 * 2 1 4 4 C 1.41395 * 108.25190 * 180.02562 * 3 2 1 5 5 N 1.32603 * 126.40290 * 179.97438 * 4 3 2 6 6 C 1.34639 * 119.99667 * 0.02588 * 5 4 3 7 7 O 1.22172 * 120.00066 * 0.02562 * 6 5 4 8 8 N 1.33841 * 119.99537 * 180.27551 * 6 5 4 9 9 C 1.34095 * 119.99651 * 235.18953 * 8 6 5 10 10 C 1.41465 * 120.67912 * 5.07144 * 9 8 6 11 11 C 1.35175 * 119.24866 * 179.69668 * 10 9 8 12 12 N 1.35608 * 120.69696 * 0.60819 * 11 10 9 13 13 H 0.96994 * 119.27209 * 179.68786 * 12 11 10 14 14 C 1.35610 * 121.45893 * 359.66481 * 12 11 10 15 15 C 1.35176 * 120.70100 * 0.02562 * 14 12 11 16 16 N 1.37620 * 107.19718 * 0.23699 * 4 3 2 17 17 H 0.97006 * 126.38484 * 179.75927 * 16 4 3 18 18 N 1.36578 * 125.49708 * 180.02562 * 2 1 3 19 19 C 1.46493 * 125.84328 * 0.02562 * 18 2 1 20 20 C 1.50699 * 109.47590 * 84.99390 * 19 18 2 21 21 H 1.08005 * 119.99401 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00422 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99830 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00043 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47094 * 90.00241 * 24 22 20 26 26 H 1.48498 * 109.47097 * 210.00210 * 24 22 20 27 27 H 1.48497 * 109.47189 * 330.00249 * 24 22 20 28 28 H 1.08997 * 109.46843 * 89.97890 * 1 2 3 29 29 H 1.09001 * 109.46976 * 209.97746 * 1 2 3 30 30 H 1.08998 * 109.47156 * 329.97944 * 1 2 3 31 31 H 1.08001 * 125.87687 * 359.97438 * 3 2 1 32 32 H 1.07995 * 120.37138 * 359.97438 * 10 9 8 33 33 H 1.07993 * 119.65158 * 180.31557 * 11 10 9 34 34 H 1.08006 * 119.64833 * 180.02562 * 14 12 11 35 35 H 1.08001 * 120.37363 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.46974 * 204.99505 * 19 18 2 37 37 H 1.08997 * 109.47522 * 324.99343 * 19 18 2 38 38 H 0.96999 * 120.00306 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2900 1.0977 0.0000 4 6 3.6404 0.6785 -0.0006 5 7 4.7083 1.4644 -0.0013 6 6 4.5593 2.8025 -0.0009 7 8 3.4402 3.2926 0.0005 8 7 5.6373 3.5958 -0.0071 9 6 5.7896 4.5275 0.9452 10 6 4.8767 4.6145 2.0224 11 6 5.0613 5.5609 2.9698 12 7 6.1004 6.4284 2.8885 13 1 6.2106 7.1022 3.5774 14 6 6.9891 6.3743 1.8656 15 6 6.8631 5.4471 0.8901 16 7 3.6392 -0.6977 -0.0064 17 1 4.4196 -1.2738 -0.0114 18 7 2.3001 -1.1119 -0.0005 19 6 1.8314 -2.4999 -0.0016 20 6 1.5537 -2.9352 -1.4174 21 1 1.7111 -2.2469 -2.2347 22 6 1.0998 -4.2125 -1.6695 23 7 0.9086 -5.0508 -0.6743 24 14 0.7563 -4.7523 -3.4244 25 1 1.9869 -5.3411 -4.0111 26 1 -0.3278 -5.7671 -3.4270 27 1 0.3367 -3.5778 -4.2304 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5141 31 1 1.9451 2.1211 -0.0004 32 1 4.0443 3.9297 2.0894 33 1 4.3712 5.6299 3.7976 34 1 7.8064 7.0796 1.8301 35 1 7.5741 5.4086 0.0781 36 1 2.5975 -3.1424 0.4324 37 1 0.9175 -2.5753 0.5875 38 1 0.5889 -5.9492 -0.8516 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349081581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:16:40 Heat of formation + Delta-G solvation = 101.416320 kcal Electronic energy + Delta-G solvation = -23035.397460 eV Core-core repulsion = 19494.476987 eV Total energy + Delta-G solvation = -3540.920473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.34402 -41.46903 -39.88958 -36.35102 -35.60474 -34.72042 -33.65656 -32.53714 -32.37712 -31.31785 -28.81671 -28.40163 -25.55063 -24.58635 -24.20613 -22.75299 -21.08358 -20.57004 -19.88619 -18.92876 -18.44189 -17.67590 -17.36743 -17.06499 -16.66327 -16.40077 -15.98504 -15.72870 -15.24386 -15.14472 -14.53774 -14.45245 -14.38882 -14.14091 -13.84515 -13.66604 -13.63410 -13.22003 -12.99554 -12.75012 -12.74551 -12.35179 -12.29283 -12.04152 -11.50748 -11.10096 -10.78885 -10.52502 -10.33760 -10.11332 -9.77079 -8.62376 -8.41003 -8.17758 -6.56712 0.00771 0.36768 0.48455 0.64705 1.36366 1.39929 1.49241 1.56462 2.15647 2.29693 2.60956 2.73606 2.93313 3.15140 3.64192 3.69242 3.88445 4.12808 4.25941 4.29256 4.29768 4.35286 4.65051 4.69766 4.81972 4.84688 4.90217 4.94032 5.09975 5.24561 5.27483 5.40207 5.50578 5.69642 5.72165 5.92256 6.05308 6.19691 6.39495 6.48789 6.60852 6.79127 7.16525 7.34516 8.20597 8.65967 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.036086 B = 0.002705 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.729344 B =10347.573414 C =10591.404229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.199 3.801 3 C -0.352 4.352 4 C 0.460 3.540 5 N -0.713 5.713 6 C 0.645 3.355 7 O -0.658 6.658 8 N -0.669 5.669 9 C 0.282 3.718 10 C -0.298 4.298 11 C 0.176 3.824 12 N -0.563 5.563 13 H 0.449 0.551 14 C 0.173 3.827 15 C -0.239 4.239 16 N -0.473 5.473 17 H 0.449 0.551 18 N -0.351 5.351 19 C 0.269 3.731 20 C -0.563 4.563 21 H 0.054 0.946 22 C 0.033 3.967 23 N -0.912 5.912 24 Si 0.963 3.037 25 H -0.278 1.278 26 H -0.272 1.272 27 H -0.271 1.271 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.169 0.831 32 H 0.103 0.897 33 H 0.211 0.789 34 H 0.234 0.766 35 H 0.148 0.852 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.806 22.043 12.983 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 C -0.384 4.384 4 C 0.206 3.794 5 N -0.477 5.477 6 C 0.346 3.654 7 O -0.544 6.544 8 N -0.410 5.410 9 C 0.126 3.874 10 C -0.326 4.326 11 C 0.044 3.956 12 N -0.168 5.168 13 H 0.291 0.709 14 C 0.041 3.959 15 C -0.265 4.265 16 N -0.197 5.197 17 H 0.297 0.703 18 N -0.138 5.138 19 C 0.152 3.848 20 C -0.601 4.601 21 H 0.072 0.928 22 C -0.170 4.170 23 N -0.549 5.549 24 Si 0.788 3.212 25 H -0.204 1.204 26 H -0.197 1.197 27 H -0.196 1.196 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.132 0.868 31 H 0.187 0.813 32 H 0.121 0.879 33 H 0.228 0.772 34 H 0.250 0.750 35 H 0.166 0.834 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.324 21.069 12.270 25.458 hybrid contribution -0.779 -0.988 -0.709 1.445 sum 6.545 20.081 11.560 24.077 Atomic orbital electron populations 1.20772 0.83319 1.05483 1.05136 1.21840 0.96031 0.84373 0.90442 1.22097 0.91259 1.00206 1.24863 1.19274 0.91952 0.82804 0.85335 1.68756 1.28813 1.05334 1.44773 1.18572 0.85309 0.86261 0.75222 1.90669 1.28797 1.79552 1.55380 1.68543 1.26858 1.14668 1.30906 1.19602 0.91988 0.87293 0.88538 1.21623 1.04430 1.06521 1.00012 1.22125 0.89246 0.86906 0.97326 1.41360 1.21604 1.29834 1.24002 0.70875 1.22540 0.92625 0.96139 0.84553 1.20767 1.01667 0.99366 1.04707 1.44441 0.99026 1.04499 1.71778 0.70259 1.47787 0.92872 1.07892 1.65236 1.19707 0.96136 0.70817 0.98163 1.21527 1.47365 0.98763 0.92482 0.92819 1.25576 0.94120 0.95785 1.01510 1.69956 1.44859 1.07239 1.32861 0.85462 0.78168 0.78241 0.79316 1.20362 1.19700 1.19610 0.88494 0.89425 0.86799 0.81342 0.87920 0.77228 0.75003 0.83425 0.94168 0.91016 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.69 10.09 71.24 0.72 -1.97 16 2 C 0.20 8.01 6.92 41.04 0.28 8.30 16 3 C -0.35 -16.17 9.41 22.26 0.21 -15.96 16 4 C 0.46 22.59 8.08 134.03 1.08 23.67 16 5 N -0.71 -38.02 10.62 -321.76 -3.42 -41.44 16 6 C 0.65 34.57 7.01 179.39 1.26 35.83 16 7 O -0.66 -36.23 12.52 -5.88 -0.07 -36.30 16 8 N -0.67 -32.32 10.56 -318.09 -3.36 -35.68 16 9 C 0.28 9.96 6.56 40.39 0.27 10.22 16 10 C -0.30 -8.79 8.93 22.36 0.20 -8.60 16 11 C 0.18 2.13 11.17 83.40 0.93 3.06 16 12 N -0.56 -1.76 5.25 -195.18 -1.02 -2.78 16 13 H 0.45 -3.45 8.90 -92.71 -0.82 -4.28 16 14 C 0.17 1.08 11.17 83.40 0.93 2.01 16 15 C -0.24 -5.08 10.01 22.36 0.22 -4.86 16 16 N -0.47 -20.83 7.39 -54.72 -0.40 -21.24 16 17 H 0.45 17.87 8.96 -213.27 -1.91 15.96 16 18 N -0.35 -15.14 3.64 -337.56 -1.23 -16.37 16 19 C 0.27 12.23 5.93 85.63 0.51 12.74 16 20 C -0.56 -28.45 9.39 25.60 0.24 -28.21 16 21 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 22 C 0.03 1.64 5.46 84.66 0.46 2.10 16 23 N -0.91 -47.47 13.29 21.45 0.28 -47.19 16 24 Si 0.96 40.90 29.54 68.60 2.03 42.92 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 28 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.09 2.52 7.14 -2.39 -0.02 2.51 16 30 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.17 8.17 5.76 -2.91 -0.02 8.15 16 32 H 0.10 3.96 6.40 -2.91 -0.02 3.94 16 33 H 0.21 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.23 -1.41 8.06 -2.91 -0.02 -1.44 16 35 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 3.20 7.18 -2.39 -0.02 3.18 16 38 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -95.86 333.31 -1.49 -97.35 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -1.61 Total: 22.38 kcal Atomic # 6 Polarization: 31.02 SS G_CDS: 7.31 Total: 38.34 kcal Atomic # 7 Polarization: -155.55 SS G_CDS: -9.15 Total: -164.70 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.07 Total: -36.30 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal Total: -95.86 -1.49 -97.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349081581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.770 kcal (2) G-P(sol) polarization free energy of solvation -95.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds