Wall clock time and date at job start Fri Apr 10 2020 14:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35093 * 125.54127 * 2 1 4 4 C 1.41063 * 108.23919 * 179.97438 * 3 2 1 5 5 N 1.33102 * 126.37051 * 179.97438 * 4 3 2 6 6 C 1.33616 * 119.99972 * 0.03295 * 5 4 3 7 7 O 1.21832 * 119.99733 * 359.97438 * 6 5 4 8 8 C 1.48353 * 119.99685 * 179.97438 * 6 5 4 9 9 N 1.32975 * 120.09541 * 6.11054 * 8 6 5 10 10 C 1.31829 * 119.92195 * 180.29354 * 9 8 6 11 11 C 1.38698 * 120.12123 * 359.66328 * 10 9 8 12 12 N 1.32119 * 120.19068 * 0.02776 * 11 10 9 13 13 C 1.32101 * 120.07189 * 359.97438 * 12 11 10 14 14 C 1.50692 * 120.06235 * 180.02562 * 13 12 11 15 15 N 1.37386 * 107.26016 * 0.22876 * 4 3 2 16 16 H 0.96996 * 126.35224 * 179.77071 * 15 4 3 17 17 N 1.36363 * 125.53446 * 179.97438 * 2 1 3 18 18 C 1.46497 * 125.85796 * 0.07708 * 17 2 1 19 19 C 1.50705 * 109.47478 * 84.99399 * 18 17 2 20 20 H 1.08003 * 119.99489 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00174 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99957 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00002 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46823 * 60.00020 * 23 21 19 25 25 H 1.48498 * 109.47179 * 179.97438 * 23 21 19 26 26 H 1.48488 * 109.47110 * 299.99886 * 23 21 19 27 27 H 1.08993 * 109.47058 * 90.02517 * 1 2 3 28 28 H 1.08999 * 109.47371 * 210.02690 * 1 2 3 29 29 H 1.09002 * 109.46492 * 330.02514 * 1 2 3 30 30 H 1.08003 * 125.88338 * 359.97438 * 3 2 1 31 31 H 1.08007 * 119.93678 * 179.69051 * 10 9 8 32 32 H 1.08002 * 119.90964 * 180.02562 * 11 10 9 33 33 H 1.09008 * 109.47309 * 96.72482 * 14 13 12 34 34 H 1.09009 * 109.47089 * 336.73215 * 14 13 12 35 35 H 1.09000 * 109.47566 * 216.73331 * 14 13 12 36 36 H 1.09002 * 109.46896 * 204.99628 * 18 17 2 37 37 H 1.08999 * 109.46959 * 324.99562 * 18 17 2 38 38 H 0.97004 * 119.99983 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2923 1.0993 0.0000 4 6 3.6391 0.6797 0.0006 5 7 4.7114 1.4682 0.0003 6 6 4.5642 2.7962 0.0000 7 8 3.4483 3.2853 -0.0004 8 6 5.7594 3.6750 0.0003 9 7 6.9743 3.1483 -0.1217 10 6 8.0344 3.9319 -0.1152 11 6 7.8844 5.3049 0.0115 12 7 6.6791 5.8337 0.1269 13 6 5.6116 5.0556 0.1213 14 6 4.2370 5.6589 0.2523 15 7 3.6381 -0.6941 -0.0043 16 1 4.4189 -1.2696 -0.0082 17 7 2.2996 -1.1097 0.0005 18 6 1.8321 -2.4981 -0.0005 19 6 1.5559 -2.9342 -1.4163 20 1 1.7124 -2.2458 -2.2337 21 6 1.1023 -4.2116 -1.6681 22 7 0.9102 -5.0493 -0.6727 23 14 0.7605 -4.7524 -3.4232 24 1 2.0067 -4.6497 -4.2243 25 1 0.2866 -6.1597 -3.4242 26 1 -0.2827 -3.8779 -4.0163 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3632 0.8903 0.5135 30 1 1.9483 2.1230 -0.0004 31 1 9.0216 3.5039 -0.2093 32 1 8.7552 5.9437 0.0160 33 1 3.7983 5.7820 -0.7380 34 1 4.3118 6.6311 0.7398 35 1 3.6065 5.0005 0.8499 36 1 2.5985 -3.1397 0.4344 37 1 0.9178 -2.5740 0.5880 38 1 0.5914 -5.9482 -0.8499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597459902.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:16:34 Heat of formation + Delta-G solvation = 94.924485 kcal Electronic energy + Delta-G solvation = -23285.124541 eV Core-core repulsion = 19743.922561 eV Total energy + Delta-G solvation = -3541.201980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.51476 -42.09161 -39.78622 -36.12590 -35.59956 -34.81800 -33.82543 -33.48071 -32.36809 -29.29042 -28.84653 -28.40990 -26.57957 -24.91687 -23.88996 -23.20897 -21.30771 -20.95974 -19.05033 -18.81753 -18.30252 -17.65635 -16.96916 -16.79895 -16.66308 -16.60115 -16.22085 -15.70796 -15.04127 -14.94720 -14.47201 -14.27897 -14.22546 -13.85884 -13.73090 -13.68588 -13.61456 -13.26737 -13.16147 -12.94510 -12.71950 -12.54393 -12.30558 -12.14658 -11.99160 -11.13640 -11.00995 -10.78019 -10.34799 -10.18874 -10.14997 -9.72247 -8.62381 -8.29590 -6.57266 -0.60915 0.06813 0.29267 0.51001 1.39090 1.41776 1.46979 1.49892 2.29486 2.51185 2.57778 2.93140 3.02996 3.12290 3.21124 3.45394 3.57699 3.66005 4.09513 4.19867 4.25135 4.30910 4.46900 4.66467 4.75508 4.78064 4.84651 4.87066 4.90172 4.93596 5.09593 5.21426 5.29365 5.48334 5.49880 5.68172 5.93499 6.08247 6.26503 6.36495 6.56277 6.68819 6.81068 7.16370 7.75471 8.65413 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.026553 B = 0.003026 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.254087 B = 9249.994374 C = 9740.551577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.199 3.801 3 C -0.342 4.342 4 C 0.452 3.548 5 N -0.688 5.688 6 C 0.534 3.466 7 O -0.578 6.578 8 C 0.032 3.968 9 N -0.416 5.416 10 C 0.032 3.968 11 C 0.081 3.919 12 N -0.463 5.463 13 C 0.112 3.888 14 C -0.095 4.095 15 N -0.462 5.462 16 H 0.452 0.548 17 N -0.341 5.341 18 C 0.266 3.734 19 C -0.564 4.564 20 H 0.058 0.942 21 C 0.034 3.966 22 N -0.912 5.912 23 Si 0.962 3.038 24 H -0.278 1.278 25 H -0.279 1.279 26 H -0.266 1.266 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.183 0.817 31 H 0.211 0.789 32 H 0.220 0.780 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 13.290 2.262 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.072 3.928 3 C -0.373 4.373 4 C 0.204 3.796 5 N -0.452 5.452 6 C 0.319 3.681 7 O -0.461 6.461 8 C -0.107 4.107 9 N -0.132 5.132 10 C -0.131 4.131 11 C -0.081 4.081 12 N -0.178 5.178 13 C -0.026 4.026 14 C -0.152 4.152 15 N -0.184 5.184 16 H 0.301 0.699 17 N -0.127 5.127 18 C 0.149 3.851 19 C -0.602 4.602 20 H 0.076 0.924 21 C -0.169 4.169 22 N -0.549 5.549 23 Si 0.786 3.214 24 H -0.203 1.203 25 H -0.204 1.204 26 H -0.190 1.190 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.136 0.864 30 H 0.200 0.800 31 H 0.227 0.773 32 H 0.237 0.763 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.868 12.641 2.328 14.130 hybrid contribution 0.040 -0.874 -0.891 1.248 sum 5.909 11.767 1.438 13.246 Atomic orbital electron populations 1.20811 0.83335 1.05616 1.05289 1.21976 0.96150 0.84456 0.90217 1.22269 0.90896 1.00639 1.23487 1.19379 0.92086 0.82691 0.85464 1.68899 1.28103 1.05090 1.43080 1.18637 0.86312 0.86088 0.77089 1.90541 1.26069 1.78687 1.50797 1.21690 0.93076 0.92759 1.03183 1.68494 0.98701 1.40259 1.05754 1.24640 0.99405 0.92237 0.96843 1.24801 0.96391 0.95418 0.91538 1.68503 0.99251 1.38687 1.11407 1.22517 0.97657 0.89853 0.92585 1.20922 0.89090 1.01242 1.03931 1.44563 0.99096 1.05032 1.69711 0.69914 1.47904 0.93136 1.08229 1.63453 1.19770 0.96327 0.70738 0.98277 1.21486 1.47537 0.98733 0.92439 0.92387 1.25558 0.94122 0.95878 1.01350 1.69949 1.44725 1.07298 1.32955 0.85536 0.78758 0.77624 0.79436 1.20327 1.20407 1.19035 0.88272 0.89741 0.86438 0.79980 0.77282 0.76319 0.89984 0.89815 0.88953 0.93996 0.90917 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.31 10.09 71.24 0.72 -1.59 16 2 C 0.20 6.72 6.93 41.13 0.28 7.01 16 3 C -0.34 -12.66 9.41 22.24 0.21 -12.45 16 4 C 0.45 18.10 8.07 133.87 1.08 19.18 16 5 N -0.69 -29.08 10.31 -311.12 -3.21 -32.29 16 6 C 0.53 21.88 7.66 87.12 0.67 22.54 16 7 O -0.58 -23.52 10.25 -4.77 -0.05 -23.57 16 8 C 0.03 1.17 6.75 41.94 0.28 1.45 16 9 N -0.42 -13.74 10.23 -184.21 -1.88 -15.62 16 10 C 0.03 0.70 11.22 84.80 0.95 1.66 16 11 C 0.08 1.54 11.23 84.76 0.95 2.49 16 12 N -0.46 -12.15 10.42 -182.32 -1.90 -14.05 16 13 C 0.11 3.49 6.82 42.79 0.29 3.78 16 14 C -0.09 -2.63 8.89 71.23 0.63 -2.00 16 15 N -0.46 -17.08 7.38 -54.81 -0.40 -17.48 16 16 H 0.45 15.03 8.96 -213.29 -1.91 13.12 16 17 N -0.34 -12.72 3.63 -337.50 -1.23 -13.94 16 18 C 0.27 10.93 5.93 85.64 0.51 11.44 16 19 C -0.56 -26.18 9.39 25.60 0.24 -25.94 16 20 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 21 C 0.03 1.59 5.46 84.65 0.46 2.05 16 22 N -0.91 -45.23 13.29 21.44 0.28 -44.94 16 23 Si 0.96 38.40 29.54 68.60 2.03 40.42 16 24 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 27 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.08 2.09 7.14 -2.39 -0.02 2.07 16 29 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.18 6.82 5.77 -2.91 -0.02 6.81 16 31 H 0.21 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.22 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.09 2.89 5.82 -2.39 -0.01 2.87 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 2.96 7.18 -2.39 -0.02 2.94 16 38 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 Total: -1.00 -64.65 332.01 0.13 -64.52 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.79 Total: 27.33 kcal Atomic # 6 Polarization: 22.34 SS G_CDS: 7.28 Total: 29.62 kcal Atomic # 7 Polarization: -129.99 SS G_CDS: -8.34 Total: -138.32 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.42 kcal Total: -64.65 0.13 -64.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597459902.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.443 kcal (2) G-P(sol) polarization free energy of solvation -64.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds