Wall clock time and date at job start Fri Apr 10 2020 14:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39965 * 120.31843 * 2 1 4 4 N 1.31499 * 120.10452 * 179.97438 * 3 2 1 5 5 C 1.33381 * 120.85055 * 0.02562 * 4 3 2 6 6 C 1.40809 * 132.46982 * 180.02562 * 5 4 3 7 7 C 1.46576 * 126.54418 * 359.97438 * 6 5 4 8 8 O 1.21718 * 120.00021 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00471 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00164 * 180.02562 * 9 7 6 11 11 C 1.53951 * 113.74117 * 253.74136 * 10 9 7 12 12 N 1.47816 * 86.03504 * 222.08876 * 11 10 9 13 13 C 1.36938 * 134.45238 * 204.65194 * 12 11 10 14 14 H 1.08003 * 119.99460 * 179.86195 * 13 12 11 15 15 C 1.38810 * 120.00065 * 359.85744 * 13 12 11 16 16 N 1.31617 * 120.00267 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99629 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47224 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46949 * 120.00551 * 17 15 13 20 20 H 1.48507 * 109.46944 * 239.99777 * 17 15 13 21 21 C 1.47579 * 91.05248 * 24.54689 * 12 11 10 22 22 C 1.40651 * 106.91897 * 180.02562 * 6 5 4 23 23 N 1.30699 * 108.72284 * 359.97438 * 22 6 5 24 24 N 1.36586 * 120.80591 * 359.97438 * 5 4 3 25 25 C 1.35745 * 120.32443 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47359 * 90.00180 * 1 2 3 27 27 H 1.09006 * 109.46651 * 210.00176 * 1 2 3 28 28 H 1.08999 * 109.46985 * 329.99432 * 1 2 3 29 29 H 1.08000 * 119.95008 * 359.70224 * 3 2 1 30 30 H 0.97005 * 119.99893 * 0.02562 * 9 7 6 31 31 H 1.08998 * 112.94568 * 25.33684 * 10 9 7 32 32 H 1.08998 * 113.76767 * 336.34730 * 11 10 9 33 33 H 1.09003 * 113.76803 * 107.74770 * 11 10 9 34 34 H 0.97003 * 119.99804 * 179.97438 * 16 15 13 35 35 H 1.09000 * 113.77203 * 221.14992 * 21 12 11 36 36 H 1.09001 * 113.76528 * 89.75651 * 21 12 11 37 37 H 1.08000 * 125.63334 * 179.97438 * 22 6 5 38 38 H 1.08008 * 120.42064 * 0.04646 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2082 0.0000 4 7 3.5285 1.2033 0.0005 5 6 4.2082 0.0557 0.0005 6 6 5.5864 -0.2331 0.0015 7 6 6.6821 0.7405 0.0022 8 8 6.4369 1.9327 0.0016 9 7 7.9612 0.3157 0.0036 10 6 9.0563 1.2889 0.0049 11 6 9.7832 1.4058 -1.3471 12 7 11.0313 1.4463 -0.5562 13 6 12.2871 1.9482 -0.7713 14 1 13.0465 1.8476 -0.0100 15 6 12.5840 2.5861 -1.9679 16 7 11.6584 2.7091 -2.8955 17 14 14.2973 3.2702 -2.2615 18 1 15.1469 3.0039 -1.0731 19 1 14.8943 2.6152 -3.4530 20 1 14.2127 4.7348 -2.4921 21 6 10.3801 0.7314 0.5586 22 6 5.7111 -1.6340 0.0003 23 7 4.5153 -2.1616 -0.0006 24 7 3.5553 -1.1440 0.0005 25 6 2.1924 -1.1717 0.0005 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6780 2.1460 -0.0049 30 1 8.1567 -0.6344 0.0037 31 1 8.7708 2.2492 0.4342 32 1 9.6893 0.5194 -1.9745 33 1 9.5702 2.3315 -1.8818 34 1 11.8659 3.1552 -3.7315 35 1 10.6429 1.1196 1.5427 36 1 10.4619 -0.3535 0.4922 37 1 6.6412 -2.1830 0.0002 38 1 1.6646 -2.1140 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031033056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:18:10 Heat of formation + Delta-G solvation = 144.745054 kcal Electronic energy + Delta-G solvation = -23173.431023 eV Core-core repulsion = 19634.389425 eV Total energy + Delta-G solvation = -3539.041598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.69634 -39.31437 -38.45939 -37.21732 -34.61629 -33.46972 -32.83225 -31.69199 -29.90527 -27.74836 -26.99031 -25.17517 -24.73610 -23.97446 -22.48503 -22.24307 -20.15502 -19.54706 -18.68698 -17.44456 -16.85585 -16.69719 -16.48110 -15.66439 -15.49304 -14.87970 -14.39347 -14.25502 -13.90602 -13.85631 -13.70913 -13.65358 -13.26228 -12.88135 -12.65626 -12.58436 -11.79877 -11.72893 -11.43526 -11.36294 -11.24063 -10.83980 -10.71523 -10.32689 -10.06169 -9.95374 -9.74774 -9.48988 -9.36476 -8.75736 -8.37603 -8.06912 -6.85507 -5.71690 -3.05518 0.11414 0.46041 1.64399 2.00375 2.93410 3.42517 3.46641 3.50666 3.51829 3.55054 3.80978 3.92026 3.95906 4.24817 4.42293 4.52002 4.83184 4.85518 4.96711 5.00591 5.18976 5.24797 5.38652 5.50508 5.56511 5.64512 5.68798 5.91895 6.07913 6.16952 6.31660 6.50630 6.66175 6.91104 7.03454 7.32030 7.35502 7.48172 7.64970 8.02035 8.07970 8.80010 9.08359 9.74645 10.62197 11.45017 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.037242 B = 0.002707 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.660139 B =10340.204886 C =10708.225670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.189 4.189 3 C 0.184 3.816 4 N -0.432 5.432 5 C 0.310 3.690 6 C -0.276 4.276 7 C 0.590 3.410 8 O -0.531 6.531 9 N -0.715 5.715 10 C 0.097 3.903 11 C 0.154 3.846 12 N -0.608 5.608 13 C -0.223 4.223 14 H 0.082 0.918 15 C -0.008 4.008 16 N -0.918 5.918 17 Si 0.913 3.087 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.112 3.888 22 C 0.127 3.873 23 N -0.313 5.313 24 N -0.305 5.305 25 C 0.157 3.843 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.183 0.817 30 H 0.392 0.608 31 H 0.111 0.889 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.254 0.746 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.206 0.794 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.728 -10.411 6.903 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.196 4.196 3 C 0.001 3.999 4 N -0.142 5.142 5 C 0.079 3.921 6 C -0.293 4.293 7 C 0.377 3.623 8 O -0.407 6.407 9 N -0.365 5.365 10 C -0.008 4.008 11 C 0.027 3.973 12 N -0.335 5.335 13 C -0.351 4.351 14 H 0.100 0.900 15 C -0.205 4.205 16 N -0.564 5.564 17 Si 0.744 3.256 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.216 1.216 21 C -0.015 4.015 22 C -0.054 4.054 23 N -0.135 5.135 24 N -0.073 5.073 25 C 0.021 3.979 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.200 0.800 30 H 0.225 0.775 31 H 0.129 0.871 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.223 0.777 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -24.483 -9.837 6.725 27.228 hybrid contribution 1.038 -0.360 -0.374 1.161 sum -23.444 -10.196 6.351 26.343 Atomic orbital electron populations 1.20618 0.87456 1.04027 1.03394 1.20610 0.99150 0.92379 1.07415 1.23623 0.89023 0.98570 0.88730 1.68364 1.08386 1.23983 1.13424 1.20417 0.93231 0.81100 0.97402 1.19661 0.90422 0.93694 1.25484 1.16771 0.81700 0.87217 0.76653 1.90841 1.83897 1.16174 1.49830 1.45864 1.05247 1.10028 1.75388 1.23837 0.83321 0.92823 1.00799 1.22725 0.82615 1.00301 0.91633 1.45735 1.08962 1.64062 1.14738 1.19024 0.86043 1.29645 1.00365 0.90037 1.24825 0.98119 1.01193 0.96335 1.69849 1.32110 1.47328 1.07156 0.86027 0.83403 0.78526 0.77669 1.20430 1.21777 1.21643 1.22876 0.89609 0.95477 0.93490 1.24187 0.96580 0.92468 0.92176 1.77574 0.96370 1.08270 1.31313 1.47012 1.06058 1.07981 1.46296 1.21923 0.79395 1.01199 0.95339 0.90226 0.90784 0.90087 0.79992 0.77464 0.87142 0.95369 0.90543 0.93629 0.93281 0.94733 0.77724 0.80206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.20 10.03 36.01 0.36 0.16 16 2 C -0.19 -1.16 5.86 -104.87 -0.61 -1.78 16 3 C 0.18 1.60 10.97 -17.05 -0.19 1.41 16 4 N -0.43 -6.18 10.26 -12.00 -0.12 -6.30 16 5 C 0.31 4.61 7.74 -155.84 -1.21 3.41 16 6 C -0.28 -4.26 6.17 -104.65 -0.65 -4.90 16 7 C 0.59 10.86 7.78 -12.90 -0.10 10.76 16 8 O -0.53 -12.01 16.36 5.17 0.08 -11.92 16 9 N -0.71 -11.98 5.36 -56.68 -0.30 -12.28 16 10 C 0.10 1.99 4.40 -70.14 -0.31 1.69 16 11 C 0.15 3.83 7.33 -2.83 -0.02 3.80 16 12 N -0.61 -16.06 3.70 -177.86 -0.66 -16.72 16 13 C -0.22 -6.41 10.70 -15.06 -0.16 -6.57 16 14 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 16 N -0.92 -28.14 11.39 55.49 0.63 -27.51 16 17 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 C 0.11 2.31 8.69 -2.97 -0.03 2.29 16 22 C 0.13 1.51 11.44 -17.12 -0.20 1.31 16 23 N -0.31 -3.87 12.58 30.77 0.39 -3.49 16 24 N -0.31 -3.67 3.86 -11.97 -0.05 -3.71 16 25 C 0.16 1.20 10.94 -16.45 -0.18 1.02 16 26 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.07 0.07 8.09 -51.93 -0.42 -0.35 16 28 H 0.08 0.09 8.10 -51.93 -0.42 -0.33 16 29 H 0.18 0.90 8.06 -52.49 -0.42 0.47 16 30 H 0.39 5.14 7.63 -40.82 -0.31 4.83 16 31 H 0.11 2.48 7.51 -51.93 -0.39 2.09 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 2.17 7.16 -51.93 -0.37 1.80 16 34 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.65 8.11 -51.93 -0.42 0.22 16 37 H 0.21 1.60 7.46 -52.49 -0.39 1.21 16 38 H 0.18 0.73 8.06 -52.48 -0.42 0.31 16 LS Contribution 332.68 15.07 5.01 5.01 Total: -1.00 -39.36 332.68 -7.81 -47.16 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.39 Total: -0.10 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: -3.38 Total: 12.27 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -0.11 Total: -70.01 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -39.36 -7.81 -47.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031033056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.906 kcal (2) G-P(sol) polarization free energy of solvation -39.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds