Wall clock time and date at job start Fri Apr 10 2020 14:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39965 * 120.31843 * 2 1 4 4 N 1.31499 * 120.10452 * 179.97438 * 3 2 1 5 5 C 1.33381 * 120.85055 * 0.02562 * 4 3 2 6 6 C 1.40809 * 132.46982 * 180.02562 * 5 4 3 7 7 C 1.46576 * 126.54418 * 359.97438 * 6 5 4 8 8 O 1.21718 * 120.00021 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00471 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00164 * 180.02562 * 9 7 6 11 11 C 1.53951 * 113.74117 * 253.74136 * 10 9 7 12 12 N 1.47816 * 86.03504 * 222.08876 * 11 10 9 13 13 C 1.36938 * 134.45238 * 204.65194 * 12 11 10 14 14 H 1.08003 * 119.99460 * 179.86195 * 13 12 11 15 15 C 1.38810 * 120.00065 * 359.85744 * 13 12 11 16 16 N 1.31617 * 120.00267 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99629 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47224 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46949 * 120.00551 * 17 15 13 20 20 H 1.48507 * 109.46944 * 239.99777 * 17 15 13 21 21 C 1.47579 * 91.05248 * 24.54689 * 12 11 10 22 22 C 1.40651 * 106.91897 * 180.02562 * 6 5 4 23 23 N 1.30699 * 108.72284 * 359.97438 * 22 6 5 24 24 N 1.36586 * 120.80591 * 359.97438 * 5 4 3 25 25 C 1.35745 * 120.32443 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47359 * 90.00180 * 1 2 3 27 27 H 1.09006 * 109.46651 * 210.00176 * 1 2 3 28 28 H 1.08999 * 109.46985 * 329.99432 * 1 2 3 29 29 H 1.08000 * 119.95008 * 359.70224 * 3 2 1 30 30 H 0.97005 * 119.99893 * 0.02562 * 9 7 6 31 31 H 1.08998 * 112.94568 * 25.33684 * 10 9 7 32 32 H 1.08998 * 113.76767 * 336.34730 * 11 10 9 33 33 H 1.09003 * 113.76803 * 107.74770 * 11 10 9 34 34 H 0.97003 * 119.99804 * 179.97438 * 16 15 13 35 35 H 1.09000 * 113.77203 * 221.14992 * 21 12 11 36 36 H 1.09001 * 113.76528 * 89.75651 * 21 12 11 37 37 H 1.08000 * 125.63334 * 179.97438 * 22 6 5 38 38 H 1.08008 * 120.42064 * 0.04646 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2082 0.0000 4 7 3.5285 1.2033 0.0005 5 6 4.2082 0.0557 0.0005 6 6 5.5864 -0.2331 0.0015 7 6 6.6821 0.7405 0.0022 8 8 6.4369 1.9327 0.0016 9 7 7.9612 0.3157 0.0036 10 6 9.0563 1.2889 0.0049 11 6 9.7832 1.4058 -1.3471 12 7 11.0313 1.4463 -0.5562 13 6 12.2871 1.9482 -0.7713 14 1 13.0465 1.8476 -0.0100 15 6 12.5840 2.5861 -1.9679 16 7 11.6584 2.7091 -2.8955 17 14 14.2973 3.2702 -2.2615 18 1 15.1469 3.0039 -1.0731 19 1 14.8943 2.6152 -3.4530 20 1 14.2127 4.7348 -2.4921 21 6 10.3801 0.7314 0.5586 22 6 5.7111 -1.6340 0.0003 23 7 4.5153 -2.1616 -0.0006 24 7 3.5553 -1.1440 0.0005 25 6 2.1924 -1.1717 0.0005 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6780 2.1460 -0.0049 30 1 8.1567 -0.6344 0.0037 31 1 8.7708 2.2492 0.4342 32 1 9.6893 0.5194 -1.9745 33 1 9.5702 2.3315 -1.8818 34 1 11.8659 3.1552 -3.7315 35 1 10.6429 1.1196 1.5427 36 1 10.4619 -0.3535 0.4922 37 1 6.6412 -2.1830 0.0002 38 1 1.6646 -2.1140 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031033056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:18:09 Heat of formation + Delta-G solvation = 114.894206 kcal Electronic energy + Delta-G solvation = -23174.725453 eV Core-core repulsion = 19634.389425 eV Total energy + Delta-G solvation = -3540.336028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.54796 -40.77452 -39.45194 -38.84799 -35.38737 -35.09118 -33.92697 -33.36711 -30.91517 -29.40098 -27.87716 -26.59251 -25.98108 -25.36959 -23.92002 -23.10032 -21.39744 -21.29894 -19.64506 -18.75888 -18.28890 -17.96710 -17.36677 -17.07392 -16.92638 -16.44922 -15.76183 -15.54454 -15.15053 -14.99483 -14.62754 -14.50309 -14.35407 -13.86632 -13.62655 -13.40131 -13.28365 -13.17473 -13.06152 -12.82925 -12.67621 -12.62687 -12.26726 -12.07658 -11.89139 -11.50542 -10.90935 -10.87448 -10.81823 -10.48226 -9.92577 -9.06894 -8.95821 -7.90426 -5.26133 -0.64835 -0.28638 0.86245 1.01878 1.45789 1.48200 1.58550 2.06815 2.23536 2.51719 2.57026 2.80248 2.95846 3.27910 3.40625 3.43133 3.73918 3.86129 3.89524 3.91671 4.15533 4.28397 4.39474 4.52231 4.57230 4.77500 4.86168 4.92890 4.93725 5.02398 5.07629 5.22135 5.27035 5.28302 5.42620 5.49622 5.76334 5.90577 6.16329 6.55487 6.75155 6.89063 7.43316 7.59248 8.52890 9.26667 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.037242 B = 0.002707 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.660139 B =10340.204886 C =10708.225670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.169 4.169 3 C 0.190 3.810 4 N -0.496 5.496 5 C 0.298 3.702 6 C -0.325 4.325 7 C 0.591 3.409 8 O -0.586 6.586 9 N -0.699 5.699 10 C 0.124 3.876 11 C 0.152 3.848 12 N -0.639 5.639 13 C -0.232 4.232 14 H 0.092 0.908 15 C -0.074 4.074 16 N -0.957 5.957 17 Si 0.985 3.015 18 H -0.260 1.260 19 H -0.291 1.291 20 H -0.294 1.294 21 C 0.125 3.875 22 C 0.144 3.856 23 N -0.324 5.324 24 N -0.307 5.307 25 C 0.146 3.854 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.216 0.784 30 H 0.413 0.587 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.029 0.971 34 H 0.248 0.752 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.241 0.759 38 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.669 -12.529 8.138 30.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.174 4.174 3 C 0.010 3.990 4 N -0.208 5.208 5 C 0.064 3.936 6 C -0.341 4.341 7 C 0.381 3.619 8 O -0.467 6.467 9 N -0.351 5.351 10 C 0.017 3.983 11 C 0.025 3.975 12 N -0.367 5.367 13 C -0.360 4.360 14 H 0.110 0.890 15 C -0.266 4.266 16 N -0.606 5.606 17 Si 0.813 3.187 18 H -0.184 1.184 19 H -0.218 1.218 20 H -0.222 1.222 21 C -0.001 4.001 22 C -0.037 4.037 23 N -0.146 5.146 24 N -0.074 5.074 25 C 0.012 3.988 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.232 0.768 30 H 0.250 0.750 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.257 0.743 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -26.479 -12.032 8.006 30.166 hybrid contribution 1.306 0.293 -0.721 1.520 sum -25.173 -11.739 7.285 28.715 Atomic orbital electron populations 1.20786 0.83794 1.05832 1.04739 1.21098 1.01212 0.90796 1.04334 1.24420 0.87754 1.01234 0.85566 1.68383 1.10992 1.24552 1.16850 1.20541 0.93639 0.82284 0.97096 1.19392 0.89985 0.94514 1.30250 1.17206 0.82445 0.87102 0.75168 1.90796 1.84683 1.18646 1.52553 1.45519 1.04075 1.10430 1.75058 1.23118 0.84624 0.93017 0.97524 1.22596 0.83740 0.97930 0.93194 1.46065 1.08694 1.65157 1.16753 1.19491 0.87192 1.28847 1.00455 0.88992 1.25765 1.02179 1.02267 0.96411 1.70071 1.34245 1.48775 1.07480 0.84917 0.78861 0.77069 0.77898 1.18362 1.21849 1.22154 1.23018 0.87715 0.96840 0.92494 1.24637 0.97782 0.91006 0.90306 1.77507 0.96512 1.08522 1.32052 1.47220 1.07378 1.06950 1.45828 1.22870 0.77910 1.03566 0.94501 0.88841 0.88800 0.88550 0.76774 0.74983 0.89462 0.95488 0.95233 0.94352 0.91670 0.91134 0.74343 0.76343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.04 10.03 71.24 0.71 0.75 16 2 C -0.17 -1.55 5.86 -20.02 -0.12 -1.67 16 3 C 0.19 3.01 10.97 85.16 0.93 3.95 16 4 N -0.50 -14.44 10.26 -191.88 -1.97 -16.41 16 5 C 0.30 8.99 7.74 133.99 1.04 10.03 16 6 C -0.32 -10.21 6.17 -19.88 -0.12 -10.34 16 7 C 0.59 22.67 7.78 86.42 0.67 23.34 16 8 O -0.59 -28.27 16.36 -4.41 -0.07 -28.34 16 9 N -0.70 -23.63 5.36 -451.43 -2.42 -26.05 16 10 C 0.12 5.20 4.40 46.75 0.21 5.41 16 11 C 0.15 7.91 7.33 86.44 0.63 8.54 16 12 N -0.64 -34.18 3.70 -716.63 -2.65 -36.83 16 13 C -0.23 -13.39 10.70 84.03 0.90 -12.49 16 14 H 0.09 4.98 7.83 -2.91 -0.02 4.95 16 15 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 16 N -0.96 -61.03 11.39 21.65 0.25 -60.79 16 17 Si 0.98 47.27 29.55 68.60 2.03 49.29 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 20 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 21 C 0.12 4.98 8.69 86.49 0.75 5.73 16 22 C 0.14 3.28 11.44 85.45 0.98 4.26 16 23 N -0.32 -7.55 12.58 -56.57 -0.71 -8.26 16 24 N -0.31 -6.98 3.86 -191.79 -0.74 -7.72 16 25 C 0.15 1.83 10.94 83.42 0.91 2.74 16 26 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H 0.09 -0.30 8.09 -2.38 -0.02 -0.32 16 28 H 0.10 -0.24 8.10 -2.39 -0.02 -0.26 16 29 H 0.22 1.63 8.06 -2.91 -0.02 1.60 16 30 H 0.41 10.32 7.63 -92.70 -0.71 9.61 16 31 H 0.09 4.12 7.51 -2.39 -0.02 4.11 16 32 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.03 1.79 7.16 -2.39 -0.02 1.77 16 34 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.07 2.39 8.11 -2.39 -0.02 2.37 16 37 H 0.24 3.20 7.46 -2.91 -0.02 3.18 16 38 H 0.22 0.85 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -92.35 332.68 2.07 -90.28 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.40 Total: 8.48 kcal Atomic # 6 Polarization: 28.38 SS G_CDS: 7.97 Total: 36.35 kcal Atomic # 7 Polarization: -147.81 SS G_CDS: -8.25 Total: -156.06 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.07 Total: -28.34 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -92.35 2.07 -90.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031033056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.173 kcal (2) G-P(sol) polarization free energy of solvation -92.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds