Wall clock time and date at job start Fri Apr 10 2020 14:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37863 * 119.65451 * 2 1 4 4 C 1.38885 * 119.95854 * 179.97438 * 3 2 1 5 5 O 1.34832 * 133.42166 * 179.97438 * 4 3 2 6 6 C 1.34451 * 110.89548 * 180.02562 * 5 4 3 7 7 C 1.33985 * 110.16167 * 359.97438 * 6 5 4 8 8 C 1.50700 * 126.90658 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47442 * 265.02658 * 8 7 6 10 10 O 1.21290 * 119.99867 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00190 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99916 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47286 * 35.00070 * 12 11 9 14 14 C 1.53008 * 109.46993 * 275.00263 * 12 11 9 15 15 C 1.50703 * 109.47206 * 155.00610 * 12 11 9 16 16 H 1.07999 * 119.99789 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00333 * 180.02562 * 15 12 11 18 18 N 1.31523 * 120.00029 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00220 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47057 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47259 * 119.99720 * 19 17 15 22 22 H 1.48499 * 109.47274 * 240.00053 * 19 17 15 23 23 C 1.40507 * 119.31890 * 359.97438 * 4 3 2 24 24 C 1.39388 * 120.15617 * 359.75143 * 23 4 3 25 25 C 1.37753 * 119.59939 * 0.50331 * 24 23 4 26 26 C 1.50703 * 119.86282 * 179.77364 * 25 24 23 27 27 H 1.09002 * 109.47243 * 270.01771 * 1 2 3 28 28 H 1.08998 * 109.47498 * 30.02416 * 1 2 3 29 29 H 1.09005 * 109.47231 * 150.02640 * 1 2 3 30 30 H 1.07997 * 120.01828 * 359.95423 * 3 2 1 31 31 H 1.07998 * 124.91545 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.47102 * 25.03412 * 8 7 6 33 33 H 1.08997 * 109.46971 * 145.02829 * 8 7 6 34 34 H 0.96994 * 119.99656 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.46461 * 180.02562 * 14 12 11 36 36 H 1.09003 * 109.47147 * 299.99932 * 14 12 11 37 37 H 1.08993 * 109.46920 * 60.00420 * 14 12 11 38 38 H 0.96996 * 120.00341 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.19865 * 180.25380 * 24 23 4 40 40 H 1.09002 * 109.47152 * 269.72171 * 26 25 24 41 41 H 1.09001 * 109.46980 * 149.72272 * 26 25 24 42 42 H 1.09004 * 109.47113 * 29.72253 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1890 1.1981 0.0000 4 6 3.5778 1.2054 0.0005 5 8 4.4994 2.1896 0.0002 6 6 5.7441 1.6812 0.0005 7 6 5.6959 0.3422 0.0016 8 6 6.8676 -0.6055 0.0016 9 6 7.1800 -1.0183 -1.4136 10 8 6.5167 -0.5852 -2.3321 11 7 8.1970 -1.8680 -1.6589 12 6 8.5010 -2.2688 -3.0348 13 1 8.3129 -1.4318 -3.7071 14 6 7.6123 -3.4500 -3.4301 15 6 9.9490 -2.6752 -3.1314 16 1 10.5798 -2.6382 -2.2556 17 6 10.4687 -3.0933 -4.3381 18 7 9.7006 -3.1379 -5.4048 19 14 12.2637 -3.5963 -4.4579 20 1 12.9065 -3.4577 -3.1265 21 1 12.3529 -5.0095 -4.9053 22 1 12.9584 -2.7222 -5.4370 23 6 4.2724 -0.0160 0.0016 24 6 3.5708 -1.2204 0.0074 25 6 2.1933 -1.2055 0.0015 26 6 1.4288 -2.5042 0.0025 27 1 -0.3634 0.0003 1.0277 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3634 -0.8903 -0.5134 30 1 1.6437 2.1302 -0.0007 31 1 6.6512 2.2672 0.0000 32 1 7.7359 -0.1098 0.4356 33 1 6.6208 -1.4883 0.5915 34 1 8.7276 -2.2141 -0.9244 35 1 7.8389 -3.7485 -4.4537 36 1 7.8005 -4.2872 -2.7578 37 1 6.5651 -3.1561 -3.3603 38 1 10.0661 -3.4323 -6.2537 39 1 4.1039 -2.1597 0.0124 40 1 1.2446 -2.8182 -1.0249 41 1 0.4775 -2.3654 0.5161 42 1 2.0115 -3.2684 0.5170 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058137072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:17:17 Heat of formation + Delta-G solvation = -27.508569 kcal Electronic energy + Delta-G solvation = -23805.032552 eV Core-core repulsion = 20329.769068 eV Total energy + Delta-G solvation = -3475.263484 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.33608 -38.78470 -38.56491 -34.89368 -33.84038 -32.38685 -32.20774 -31.71530 -29.37007 -27.61119 -26.82495 -26.34249 -25.24611 -22.49271 -21.63351 -20.95041 -19.93931 -19.26397 -17.33167 -16.92256 -16.62273 -16.02433 -15.52597 -15.29459 -15.09458 -14.51954 -14.38038 -14.15798 -14.04379 -13.87442 -12.98629 -12.93705 -12.76756 -12.59785 -12.40158 -12.30268 -12.22022 -11.80866 -11.61758 -11.39937 -11.37591 -11.08433 -10.93988 -10.80199 -10.67838 -10.29683 -10.24066 -9.83834 -9.03905 -8.97094 -8.55168 -8.29622 -7.94732 -7.88291 -6.12367 -4.21768 0.98377 1.38401 2.42412 2.90094 3.23013 3.30758 3.33322 3.43630 3.67021 4.20073 4.42785 4.49598 4.65735 4.74601 4.88016 5.04372 5.13782 5.19841 5.26722 5.28160 5.41195 5.51536 5.54807 5.57562 5.60251 5.66296 5.71430 5.83783 5.94571 6.00365 6.27812 6.34883 6.52592 6.55737 6.72976 6.83573 6.97847 7.16608 7.26829 7.48394 7.57907 7.70377 7.92664 8.15787 8.69111 8.79516 9.17052 9.46279 10.93627 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.023637 B = 0.003159 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.306861 B = 8862.818303 C = 9552.621371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.066 4.066 3 C -0.109 4.109 4 C 0.050 3.950 5 O -0.195 6.195 6 C 0.011 3.989 7 C -0.146 4.146 8 C -0.074 4.074 9 C 0.500 3.500 10 O -0.545 6.545 11 N -0.711 5.711 12 C 0.265 3.735 13 H 0.047 0.953 14 C -0.146 4.146 15 C -0.533 4.533 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.883 5.883 19 Si 0.901 3.099 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.110 4.110 24 C -0.062 4.062 25 C -0.106 4.106 26 C -0.111 4.111 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.128 0.872 31 H 0.206 0.794 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.388 0.612 35 H 0.089 0.911 36 H 0.026 0.974 37 H 0.014 0.986 38 H 0.264 0.736 39 H 0.125 0.875 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.015 4.927 14.553 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.066 4.066 3 C -0.127 4.127 4 C 0.003 3.997 5 O -0.097 6.097 6 C -0.054 4.054 7 C -0.148 4.148 8 C -0.114 4.114 9 C 0.284 3.716 10 O -0.424 6.424 11 N -0.360 5.360 12 C 0.163 3.837 13 H 0.065 0.935 14 C -0.205 4.205 15 C -0.571 4.571 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.110 4.110 24 C -0.080 4.080 25 C -0.106 4.106 26 C -0.167 4.167 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.146 0.854 31 H 0.222 0.778 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.220 0.780 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.548 5.449 13.656 20.684 hybrid contribution 1.568 -0.562 0.095 1.668 sum -12.981 4.887 13.751 19.532 Atomic orbital electron populations 1.20796 0.90603 1.03059 1.02327 1.19405 0.95847 0.91363 0.99973 1.19623 0.88371 0.98551 1.06193 1.19504 0.90980 0.85827 1.03355 1.83976 1.14382 1.34656 1.76680 1.23640 0.85662 0.93500 1.02599 1.20473 0.92542 0.93749 1.07990 1.20069 0.95700 0.98960 0.96708 1.20335 0.81284 0.79865 0.90139 1.90684 1.49989 1.55604 1.46079 1.46519 1.31740 1.45825 1.11893 1.18719 0.93942 0.93980 0.77068 0.93486 1.22070 0.96159 0.98508 1.03767 1.21264 0.94376 1.45703 0.95782 0.92030 1.24903 0.98225 0.95187 0.95484 1.69919 1.35419 1.46590 1.00166 0.86396 0.84362 0.78194 0.78153 1.19737 1.20880 1.20885 1.19682 0.92566 0.93886 1.04909 1.20368 0.92879 0.96525 0.98236 1.19560 0.93124 0.94990 1.02904 1.20770 0.99646 0.93854 1.02449 0.91068 0.91459 0.90986 0.85381 0.77760 0.88254 0.88486 0.77976 0.89218 0.95530 0.96721 0.92639 0.85705 0.91129 0.91404 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.16 36.00 0.33 -0.57 16 2 C -0.07 -0.77 5.88 -104.58 -0.61 -1.39 16 3 C -0.11 -1.41 9.69 -39.48 -0.38 -1.79 16 4 C 0.05 0.78 7.41 -38.49 -0.29 0.49 16 5 O -0.20 -2.97 10.58 3.84 0.04 -2.93 16 6 C 0.01 0.15 11.89 29.24 0.35 0.50 16 7 C -0.15 -2.25 4.85 -102.66 -0.50 -2.75 16 8 C -0.07 -1.06 6.25 -29.04 -0.18 -1.24 16 9 C 0.50 9.95 7.79 -10.99 -0.09 9.86 16 10 O -0.55 -13.44 15.70 5.55 0.09 -13.35 16 11 N -0.71 -14.68 5.07 -54.93 -0.28 -14.96 16 12 C 0.26 6.79 2.56 -69.08 -0.18 6.61 16 13 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 14 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 15 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -25.09 11.32 55.43 0.63 -24.46 16 19 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.11 -1.76 6.38 -105.16 -0.67 -2.43 16 24 C -0.06 -0.91 9.74 -39.33 -0.38 -1.29 16 25 C -0.11 -1.33 5.88 -104.62 -0.61 -1.94 16 26 C -0.11 -1.04 9.17 36.01 0.33 -0.71 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.07 0.52 6.67 -51.93 -0.35 0.17 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.21 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.39 6.78 8.54 -40.82 -0.35 6.43 16 35 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.51 6.67 -51.93 -0.35 0.16 16 42 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 LS Contribution 354.22 15.07 5.34 5.34 Total: -1.00 -33.50 354.22 -8.08 -41.58 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.94 Total: 5.95 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.94 Total: -12.78 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.35 Total: -39.42 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.13 Total: -16.28 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.50 -8.08 -41.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058137072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.068 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds