Wall clock time and date at job start Fri Apr 10 2020 14:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37863 * 119.65451 * 2 1 4 4 C 1.38885 * 119.95854 * 179.97438 * 3 2 1 5 5 O 1.34832 * 133.42166 * 179.97438 * 4 3 2 6 6 C 1.34451 * 110.89548 * 180.02562 * 5 4 3 7 7 C 1.33985 * 110.16167 * 359.97438 * 6 5 4 8 8 C 1.50700 * 126.90658 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47442 * 265.02658 * 8 7 6 10 10 O 1.21290 * 119.99867 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00190 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99916 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47286 * 35.00070 * 12 11 9 14 14 C 1.53008 * 109.46993 * 275.00263 * 12 11 9 15 15 C 1.50703 * 109.47206 * 155.00610 * 12 11 9 16 16 H 1.07999 * 119.99789 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00333 * 180.02562 * 15 12 11 18 18 N 1.31523 * 120.00029 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00220 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47057 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47259 * 119.99720 * 19 17 15 22 22 H 1.48499 * 109.47274 * 240.00053 * 19 17 15 23 23 C 1.40507 * 119.31890 * 359.97438 * 4 3 2 24 24 C 1.39388 * 120.15617 * 359.75143 * 23 4 3 25 25 C 1.37753 * 119.59939 * 0.50331 * 24 23 4 26 26 C 1.50703 * 119.86282 * 179.77364 * 25 24 23 27 27 H 1.09002 * 109.47243 * 270.01771 * 1 2 3 28 28 H 1.08998 * 109.47498 * 30.02416 * 1 2 3 29 29 H 1.09005 * 109.47231 * 150.02640 * 1 2 3 30 30 H 1.07997 * 120.01828 * 359.95423 * 3 2 1 31 31 H 1.07998 * 124.91545 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.47102 * 25.03412 * 8 7 6 33 33 H 1.08997 * 109.46971 * 145.02829 * 8 7 6 34 34 H 0.96994 * 119.99656 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.46461 * 180.02562 * 14 12 11 36 36 H 1.09003 * 109.47147 * 299.99932 * 14 12 11 37 37 H 1.08993 * 109.46920 * 60.00420 * 14 12 11 38 38 H 0.96996 * 120.00341 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.19865 * 180.25380 * 24 23 4 40 40 H 1.09002 * 109.47152 * 269.72171 * 26 25 24 41 41 H 1.09001 * 109.46980 * 149.72272 * 26 25 24 42 42 H 1.09004 * 109.47113 * 29.72253 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1890 1.1981 0.0000 4 6 3.5778 1.2054 0.0005 5 8 4.4994 2.1896 0.0002 6 6 5.7441 1.6812 0.0005 7 6 5.6959 0.3422 0.0016 8 6 6.8676 -0.6055 0.0016 9 6 7.1800 -1.0183 -1.4136 10 8 6.5167 -0.5852 -2.3321 11 7 8.1970 -1.8680 -1.6589 12 6 8.5010 -2.2688 -3.0348 13 1 8.3129 -1.4318 -3.7071 14 6 7.6123 -3.4500 -3.4301 15 6 9.9490 -2.6752 -3.1314 16 1 10.5798 -2.6382 -2.2556 17 6 10.4687 -3.0933 -4.3381 18 7 9.7006 -3.1379 -5.4048 19 14 12.2637 -3.5963 -4.4579 20 1 12.9065 -3.4577 -3.1265 21 1 12.3529 -5.0095 -4.9053 22 1 12.9584 -2.7222 -5.4370 23 6 4.2724 -0.0160 0.0016 24 6 3.5708 -1.2204 0.0074 25 6 2.1933 -1.2055 0.0015 26 6 1.4288 -2.5042 0.0025 27 1 -0.3634 0.0003 1.0277 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3634 -0.8903 -0.5134 30 1 1.6437 2.1302 -0.0007 31 1 6.6512 2.2672 0.0000 32 1 7.7359 -0.1098 0.4356 33 1 6.6208 -1.4883 0.5915 34 1 8.7276 -2.2141 -0.9244 35 1 7.8389 -3.7485 -4.4537 36 1 7.8005 -4.2872 -2.7578 37 1 6.5651 -3.1561 -3.3603 38 1 10.0661 -3.4323 -6.2537 39 1 4.1039 -2.1597 0.0124 40 1 1.2446 -2.8182 -1.0249 41 1 0.4775 -2.3654 0.5161 42 1 2.0115 -3.2684 0.5170 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058137072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:17:16 Heat of formation + Delta-G solvation = -48.038834 kcal Electronic energy + Delta-G solvation = -23805.922811 eV Core-core repulsion = 20329.769068 eV Total energy + Delta-G solvation = -3476.153743 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.40274 -40.45858 -39.51997 -36.76603 -35.03160 -34.30342 -33.15502 -32.72089 -31.11362 -28.85564 -27.83637 -27.34111 -27.23457 -23.45482 -23.38516 -21.96652 -21.46292 -20.75124 -18.93650 -18.14822 -17.67764 -17.49578 -17.06570 -16.91734 -16.31992 -16.02577 -15.66603 -15.29579 -14.96707 -14.88371 -14.71008 -14.40286 -13.95851 -13.71670 -13.59637 -13.54620 -13.22748 -13.05107 -12.94836 -12.89838 -12.73488 -12.59976 -12.33423 -12.28967 -12.25433 -12.11414 -11.76382 -11.10112 -11.03269 -10.65188 -10.51158 -9.72825 -9.31140 -8.99591 -8.17983 -6.35820 -0.03843 0.35091 1.31693 1.44194 1.45138 1.57358 1.86583 1.88220 2.36942 2.60900 2.82566 3.12555 3.49488 3.60558 3.87161 3.92762 4.05279 4.17373 4.30393 4.35269 4.42824 4.57642 4.59440 4.71264 4.74556 4.81366 4.86663 4.87883 4.89850 4.92983 5.09203 5.16137 5.19377 5.25975 5.39014 5.41861 5.49432 5.60193 5.62388 5.68944 5.78187 5.91645 6.09665 6.20893 6.73354 7.00927 7.32758 7.61469 8.88633 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.023637 B = 0.003159 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.306861 B = 8862.818303 C = 9552.621371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.067 4.067 3 C -0.117 4.117 4 C 0.021 3.979 5 O -0.205 6.205 6 C 0.013 3.987 7 C -0.176 4.176 8 C -0.057 4.057 9 C 0.497 3.503 10 O -0.598 6.598 11 N -0.706 5.706 12 C 0.271 3.729 13 H -0.006 1.006 14 C -0.133 4.133 15 C -0.544 4.544 16 H 0.076 0.924 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.974 3.026 20 H -0.257 1.257 21 H -0.279 1.279 22 H -0.285 1.285 23 C -0.138 4.138 24 C -0.090 4.090 25 C -0.108 4.108 26 C -0.110 4.110 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.239 0.761 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.407 0.593 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.123 0.877 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.059 4.640 16.562 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.067 4.067 3 C -0.135 4.135 4 C -0.026 4.026 5 O -0.107 6.107 6 C -0.051 4.051 7 C -0.177 4.177 8 C -0.096 4.096 9 C 0.285 3.715 10 O -0.480 6.480 11 N -0.355 5.355 12 C 0.168 3.832 13 H 0.012 0.988 14 C -0.191 4.191 15 C -0.582 4.582 16 H 0.094 0.906 17 C -0.188 4.188 18 N -0.559 5.559 19 Si 0.799 3.201 20 H -0.181 1.181 21 H -0.205 1.205 22 H -0.211 1.211 23 C -0.139 4.139 24 C -0.108 4.108 25 C -0.108 4.108 26 C -0.166 4.166 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.167 0.833 31 H 0.255 0.745 32 H 0.156 0.844 33 H 0.139 0.861 34 H 0.242 0.758 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.589 5.155 15.722 22.059 hybrid contribution 1.469 -0.441 -0.545 1.628 sum -13.120 4.714 15.177 20.608 Atomic orbital electron populations 1.20891 0.87623 1.04193 1.03859 1.19904 0.97937 0.90583 0.98287 1.20055 0.87707 1.00103 1.05623 1.19960 0.92023 0.85803 1.04814 1.83957 1.14894 1.34981 1.76833 1.24337 0.86221 0.93702 1.00846 1.20727 0.92724 0.94612 1.09680 1.20018 0.96888 1.00136 0.92558 1.21315 0.79746 0.78372 0.92110 1.90660 1.51585 1.57256 1.48479 1.46257 1.32512 1.46262 1.10510 1.18293 0.94129 0.91978 0.78847 0.98802 1.21889 0.95640 0.98965 1.02648 1.21598 0.94803 1.45398 0.96432 0.90569 1.25848 1.02799 0.95100 0.95089 1.70076 1.37547 1.47450 1.00777 0.85267 0.78684 0.77596 0.78600 1.18100 1.20497 1.21071 1.20039 0.93352 0.94687 1.05796 1.20580 0.94095 0.96195 0.99938 1.20009 0.92701 0.96808 1.01307 1.20845 1.00450 0.92347 1.02951 0.89142 0.90367 0.89876 0.83263 0.74458 0.84416 0.86119 0.75774 0.91669 0.93938 0.97387 0.92612 0.85872 0.90963 0.88937 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.16 71.23 0.65 -0.81 16 2 C -0.07 -1.49 5.88 -19.84 -0.12 -1.60 16 3 C -0.12 -2.95 9.69 22.34 0.22 -2.73 16 4 C 0.02 0.65 7.41 22.98 0.17 0.82 16 5 O -0.20 -6.27 10.58 -9.18 -0.10 -6.36 16 6 C 0.01 0.36 11.89 66.85 0.79 1.16 16 7 C -0.18 -5.39 4.85 -18.59 -0.09 -5.48 16 8 C -0.06 -1.53 6.25 29.10 0.18 -1.35 16 9 C 0.50 19.86 7.79 87.66 0.68 20.54 16 10 O -0.60 -30.58 15.70 -3.06 -0.05 -30.63 16 11 N -0.71 -28.96 5.07 -446.09 -2.26 -31.23 16 12 C 0.27 14.23 2.56 44.25 0.11 14.35 16 13 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 14 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 15 C -0.54 -28.78 8.73 25.60 0.22 -28.56 16 16 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 17 C 0.01 0.61 5.30 84.65 0.45 1.06 16 18 N -0.92 -53.43 11.32 21.45 0.24 -53.19 16 19 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 23 C -0.14 -4.51 6.38 -20.21 -0.13 -4.64 16 24 C -0.09 -2.68 9.74 22.43 0.22 -2.47 16 25 C -0.11 -2.64 5.88 -19.86 -0.12 -2.76 16 26 C -0.11 -1.89 9.17 71.24 0.65 -1.23 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 29 H 0.08 0.95 6.67 -2.38 -0.02 0.93 16 30 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.24 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.41 13.55 8.54 -92.71 -0.79 12.76 16 35 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 36 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.12 3.51 8.06 -2.91 -0.02 3.48 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.09 1.12 6.67 -2.39 -0.02 1.10 16 42 H 0.07 1.15 8.08 -2.38 -0.02 1.13 16 Total: -1.00 -76.21 354.22 4.68 -71.53 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.25 Total: 25.81 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 4.57 Total: -19.91 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -2.02 Total: -84.41 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.15 Total: -37.00 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -76.21 4.68 -71.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058137072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.491 kcal (2) G-P(sol) polarization free energy of solvation -76.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds