Wall clock time and date at job start Fri Apr 10 2020 14:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.02967 * 2 1 4 4 C 1.54478 * 109.90009 * 238.84873 * 2 1 3 5 5 C 1.55958 * 102.65799 * 263.37546 * 4 2 1 6 6 H 1.08997 * 113.41167 * 202.90822 * 5 4 2 7 7 C 1.53012 * 106.57659 * 78.66629 * 5 4 2 8 8 C 1.52682 * 110.69733 * 196.86242 * 7 5 4 9 9 C 1.53238 * 108.81282 * 61.87296 * 8 7 5 10 10 C 1.52849 * 108.43432 * 297.06045 * 9 8 7 11 11 C 1.51179 * 111.37284 * 58.96187 * 10 9 8 12 12 H 1.09001 * 108.08635 * 186.53942 * 11 10 9 13 13 N 1.46521 * 113.00568 * 66.47032 * 11 10 9 14 14 S 1.65595 * 126.02612 * 30.13490 * 13 11 10 15 15 O 1.42100 * 104.27757 * 198.78058 * 14 13 11 16 16 O 1.42108 * 104.27580 * 326.63973 * 14 13 11 17 17 C 1.81398 * 104.44919 * 82.70913 * 14 13 11 18 18 C 1.53001 * 109.47194 * 180.02562 * 17 14 13 19 19 C 1.50698 * 109.47191 * 180.02562 * 18 17 14 20 20 H 1.08005 * 120.00379 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99970 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00386 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99932 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46825 * 59.99956 * 23 21 19 25 25 H 1.48498 * 109.46952 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47077 * 299.99851 * 23 21 19 27 27 H 1.09007 * 109.47104 * 321.52159 * 1 2 3 28 28 H 1.08998 * 109.47529 * 81.52555 * 1 2 3 29 29 H 1.09003 * 109.47086 * 201.52686 * 1 2 3 30 30 H 1.09002 * 110.77428 * 145.08442 * 4 2 1 31 31 H 1.09000 * 110.77702 * 21.67190 * 4 2 1 32 32 H 1.09010 * 109.23212 * 76.55173 * 7 5 4 33 33 H 1.08996 * 109.20622 * 317.15645 * 7 5 4 34 34 H 1.08995 * 109.60508 * 181.71715 * 8 7 5 35 35 H 1.09005 * 109.59756 * 302.03532 * 8 7 5 36 36 H 1.09010 * 109.67232 * 56.63450 * 9 8 7 37 37 H 1.08997 * 109.67601 * 177.16377 * 9 8 7 38 38 H 1.08998 * 108.98403 * 298.51369 * 10 9 8 39 39 H 1.08997 * 109.12843 * 179.50211 * 10 9 8 40 40 H 1.09005 * 109.47471 * 300.00317 * 17 14 13 41 41 H 1.09002 * 109.47289 * 60.00141 * 17 14 13 42 42 H 1.09000 * 109.47128 * 299.99913 * 18 17 14 43 43 H 1.08999 * 109.47266 * 60.00256 * 18 17 14 44 44 H 0.96996 * 120.00347 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9033 1.0241 0.0000 4 6 2.0558 -0.7514 -1.2431 5 6 2.3372 -2.1803 -0.6851 6 1 3.0630 -2.7403 -1.2746 7 6 0.9840 -2.8893 -0.5983 8 6 1.0747 -4.1163 0.3059 9 6 1.4529 -3.6615 1.7196 10 6 2.8374 -3.0159 1.6654 11 6 2.8579 -1.8346 0.7222 12 1 3.8882 -1.4897 0.6343 13 7 2.0318 -0.7170 1.1861 14 16 1.7165 -0.3284 2.7647 15 8 0.5635 0.4994 2.6982 16 8 1.6812 -1.5816 3.4337 17 6 3.1614 0.6337 3.2912 18 6 2.9883 1.0561 4.7515 19 6 4.1883 1.8560 5.1887 20 1 4.9942 2.0439 4.4946 21 6 4.2580 2.3470 6.4752 22 7 3.2771 2.1178 7.3207 23 14 5.7459 3.3379 7.0174 24 1 5.8730 4.5469 6.1645 25 1 5.5778 3.7479 8.4347 26 1 6.9694 2.5070 6.8837 27 1 -0.3634 0.8046 0.6395 28 1 -0.3634 0.1514 -1.0164 29 1 -0.3633 -0.9560 0.3771 30 1 2.9732 -0.2931 -1.6125 31 1 1.2969 -0.7841 -2.0248 32 1 0.6773 -3.2011 -1.5968 33 1 0.2431 -2.1996 -0.1942 34 1 0.1107 -4.6243 0.3308 35 1 1.8366 -4.7961 -0.0756 36 1 0.7250 -2.9335 2.0779 37 1 1.4725 -4.5215 2.3889 38 1 3.5610 -3.7568 1.3257 39 1 3.1141 -2.6799 2.6647 40 1 4.0594 0.0236 3.1938 41 1 3.2552 1.5208 2.6647 42 1 2.0903 1.6662 4.8493 43 1 2.8948 0.1689 5.3777 44 1 3.3260 2.4635 8.2256 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096492572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:43 Heat of formation + Delta-G solvation = -103.774494 kcal Electronic energy + Delta-G solvation = -24631.277402 eV Core-core repulsion = 21288.150731 eV Total energy + Delta-G solvation = -3343.126671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.24822 -38.30197 -36.96536 -36.04709 -35.92842 -33.41012 -33.14881 -31.48682 -29.71036 -27.60826 -26.99723 -23.85709 -23.29483 -22.76578 -21.79793 -20.80593 -19.51834 -18.73094 -17.91897 -17.23529 -17.08044 -16.59980 -16.38910 -15.90857 -15.50445 -15.16565 -15.10420 -14.69793 -14.42798 -13.92792 -13.87167 -13.75873 -13.45787 -13.19912 -13.10244 -12.93220 -12.89993 -12.82692 -12.78073 -12.60283 -12.34092 -12.28289 -12.22974 -12.14407 -11.92257 -11.72051 -11.39810 -11.14201 -11.02627 -10.80745 -10.69481 -10.67135 -9.77644 -8.28724 -6.43804 -0.69237 1.38473 1.42450 1.50794 1.81023 2.36016 2.88583 3.04125 3.15013 3.51090 3.71907 3.86338 4.00190 4.06881 4.12208 4.19122 4.31165 4.39582 4.47735 4.52466 4.58951 4.67360 4.68457 4.72468 4.78343 4.87431 5.04240 5.08084 5.12883 5.17728 5.21115 5.21744 5.26254 5.34827 5.36106 5.42102 5.50048 5.54801 5.59042 5.64448 5.73053 5.83669 6.02851 6.69134 7.26647 8.83435 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.004304 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.599705 B = 6504.487221 C = 6684.473843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.139 3.861 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.081 4.081 6 H 0.123 0.877 7 C -0.131 4.131 8 C -0.117 4.117 9 C -0.113 4.113 10 C -0.144 4.144 11 C 0.146 3.854 12 H 0.079 0.921 13 N -0.999 5.999 14 S 2.624 3.376 15 O -0.991 6.991 16 O -0.974 6.974 17 C -0.594 4.594 18 C 0.025 3.975 19 C -0.543 4.543 20 H 0.074 0.926 21 C -0.003 4.003 22 N -0.934 5.934 23 Si 0.975 3.025 24 H -0.263 1.263 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.002 0.998 43 H 0.005 0.995 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 -9.680 -22.030 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.034 3.966 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.101 4.101 6 H 0.141 0.859 7 C -0.168 4.168 8 C -0.154 4.154 9 C -0.151 4.151 10 C -0.183 4.183 11 C 0.041 3.959 12 H 0.097 0.903 13 N -0.838 5.838 14 S 2.723 3.277 15 O -0.981 6.981 16 O -0.964 6.964 17 C -0.725 4.725 18 C -0.014 4.014 19 C -0.581 4.581 20 H 0.092 0.908 21 C -0.201 4.201 22 N -0.574 5.574 23 Si 0.798 3.202 24 H -0.187 1.187 25 H -0.207 1.207 26 H -0.187 1.187 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.020 0.980 43 H 0.023 0.977 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.225 -9.866 -21.285 23.492 hybrid contribution 0.803 0.913 1.244 1.739 sum -0.422 -8.953 -20.041 21.954 Atomic orbital electron populations 1.22617 0.95592 1.02027 1.03396 1.21624 0.93921 0.96162 0.84901 0.90390 1.23026 1.02829 0.94153 0.95019 1.22409 0.97813 0.96333 0.93511 0.85866 1.21877 0.97511 0.97086 1.00289 1.21557 1.01531 0.98007 0.94342 1.21464 0.97030 0.99349 0.97243 1.21697 0.98683 0.97947 0.99953 1.21111 0.94430 0.85259 0.95094 0.90267 1.58444 1.65023 1.39687 1.20689 1.04369 0.76294 0.74363 0.72654 1.93481 1.47317 1.71436 1.85906 1.93536 1.87173 1.40957 1.74779 1.30451 1.20259 1.14727 1.07075 1.18767 0.97999 0.96240 0.88406 1.21474 1.04753 1.34099 0.97815 0.90804 1.26140 0.99933 0.97391 0.96662 1.70096 1.34269 1.46617 1.06387 0.85350 0.78583 0.78945 0.77302 1.18715 1.20736 1.18656 0.93277 0.88850 0.92565 0.88908 0.88097 0.90027 0.91836 0.92364 0.90440 0.94303 0.93030 0.88797 0.91986 0.84649 0.84877 0.97955 0.97665 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.18 7.87 71.98 0.57 -3.61 16 2 C 0.14 2.99 3.49 45.32 0.16 3.15 16 3 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.11 -1.46 5.95 32.12 0.19 -1.27 16 5 C -0.08 -1.18 3.68 -9.43 -0.03 -1.21 16 6 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 7 C -0.13 -2.16 4.89 30.49 0.15 -2.01 16 8 C -0.12 -2.20 5.92 30.57 0.18 -2.02 16 9 C -0.11 -3.02 5.29 30.62 0.16 -2.86 16 10 C -0.14 -3.61 4.75 29.95 0.14 -3.47 16 11 C 0.15 3.13 2.93 44.73 0.13 3.27 16 12 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 13 N -1.00 -26.92 2.99 -467.97 -1.40 -28.31 16 14 S 2.62 99.30 5.46 -56.49 -0.31 98.99 16 15 O -0.99 -43.05 15.41 -127.65 -1.97 -45.02 16 16 O -0.97 -40.81 12.22 -127.65 -1.56 -42.37 16 17 C -0.59 -24.00 6.12 71.98 0.44 -23.56 16 18 C 0.02 1.35 4.98 29.85 0.15 1.50 16 19 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 20 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 21 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 22 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 23 Si 0.98 43.80 29.54 68.60 2.03 45.83 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 27 H 0.05 1.44 6.86 -2.38 -0.02 1.42 16 28 H 0.09 1.53 7.66 -2.39 -0.02 1.51 16 29 H 0.06 1.44 5.60 -2.39 -0.01 1.43 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 0.97 7.37 -2.39 -0.02 0.95 16 32 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.06 1.30 3.93 -2.39 -0.01 1.29 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.04 1.28 6.32 -2.38 -0.02 1.26 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.94 5.90 -2.39 -0.01 1.92 16 40 H 0.14 4.86 8.14 -2.39 -0.02 4.85 16 41 H 0.13 4.84 8.14 -2.39 -0.02 4.82 16 42 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -74.76 336.19 0.98 -73.78 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.97 Total: 17.19 kcal Atomic # 6 Polarization: -65.43 SS G_CDS: 2.93 Total: -62.50 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -1.11 Total: -85.89 kcal Atomic # 8 Polarization: -83.86 SS G_CDS: -3.53 Total: -87.39 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 99.30 SS G_CDS: -0.31 Total: 98.99 kcal Total: -74.76 0.98 -73.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096492572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.994 kcal (2) G-P(sol) polarization free energy of solvation -74.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds