Wall clock time and date at job start Fri Apr 10 2020 14:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.89158 * 2 1 4 4 C 1.54481 * 110.04912 * 238.84543 * 2 1 3 5 5 C 1.55957 * 102.65480 * 217.76928 * 4 2 1 6 6 H 1.09005 * 112.77579 * 156.80333 * 5 4 2 7 7 C 1.53013 * 107.23545 * 281.09950 * 5 4 2 8 8 C 1.50109 * 112.10576 * 161.88463 * 7 5 4 9 9 C 1.53246 * 109.16017 * 299.38423 * 8 7 5 10 10 C 1.52867 * 108.42118 * 62.45155 * 9 8 7 11 11 C 1.51183 * 111.23898 * 300.78894 * 10 9 8 12 12 H 1.09008 * 108.58418 * 173.89079 * 11 10 9 13 13 N 1.46526 * 112.51150 * 293.98148 * 11 10 9 14 14 S 1.65600 * 126.02063 * 329.54288 * 13 11 10 15 15 O 1.42102 * 104.27716 * 33.25483 * 14 13 11 16 16 O 1.42104 * 104.27556 * 161.10753 * 14 13 11 17 17 C 1.81389 * 104.45088 * 277.17955 * 14 13 11 18 18 C 1.53004 * 109.47530 * 178.27256 * 17 14 13 19 19 C 1.50693 * 109.47407 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00257 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00188 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99818 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00221 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46951 * 89.99997 * 23 21 19 25 25 H 1.48503 * 109.47031 * 209.99446 * 23 21 19 26 26 H 1.48493 * 109.47127 * 329.99864 * 23 21 19 27 27 H 1.09004 * 109.47292 * 298.93517 * 1 2 3 28 28 H 1.08996 * 109.47403 * 58.93903 * 1 2 3 29 29 H 1.09003 * 109.46937 * 178.94036 * 1 2 3 30 30 H 1.08992 * 110.77481 * 99.47416 * 4 2 1 31 31 H 1.09000 * 110.76865 * 336.05735 * 4 2 1 32 32 H 1.08999 * 109.23542 * 282.98674 * 7 5 4 33 33 H 1.08998 * 109.23485 * 42.36754 * 7 5 4 34 34 H 1.09001 * 109.96974 * 179.11296 * 8 7 5 35 35 H 1.08998 * 108.89447 * 59.00305 * 8 7 5 36 36 H 1.09002 * 109.67650 * 302.71478 * 9 8 7 37 37 H 1.09004 * 109.70562 * 182.20139 * 9 8 7 38 38 H 1.08996 * 109.12914 * 180.33258 * 10 9 8 39 39 H 1.09003 * 109.12718 * 61.23415 * 10 9 8 40 40 H 1.09004 * 109.47645 * 298.27494 * 17 14 13 41 41 H 1.09006 * 109.46947 * 58.27304 * 17 14 13 42 42 H 1.08996 * 109.46965 * 300.00469 * 18 17 14 43 43 H 1.08998 * 109.46673 * 60.00038 * 18 17 14 44 44 H 0.96997 * 120.00059 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0596 -0.7508 -1.2419 5 6 3.3067 -1.5011 -0.6815 6 1 3.5751 -2.3752 -1.2748 7 6 4.4460 -0.4835 -0.5929 8 6 5.5472 -0.9462 0.3164 9 6 4.9842 -1.1438 1.7279 10 6 3.9201 -2.2400 1.6745 11 6 2.8024 -1.8725 0.7252 12 1 2.1276 -2.7240 0.6368 13 7 2.0317 -0.7151 1.1872 14 16 1.7709 -0.2858 2.7652 15 8 2.9592 -0.6810 3.4369 16 8 1.3875 1.0809 2.6978 17 6 0.3716 -1.3144 3.2888 18 6 0.0579 -1.0379 4.7606 19 6 -1.1042 -1.8929 5.1958 20 1 -1.5725 -2.5659 4.4929 21 6 -1.5703 -1.8153 6.4911 22 7 -1.0003 -0.9954 7.3470 23 14 -3.0112 -2.8747 7.0303 24 1 -2.5055 -4.1692 7.5533 25 1 -3.7700 -2.1726 8.0964 26 1 -3.9036 -3.1242 5.8699 27 1 -0.3634 0.4972 0.8994 28 1 -0.3634 0.5302 -0.8803 29 1 -0.3633 -1.0275 -0.0190 30 1 2.3497 -0.0487 -2.0235 31 1 1.3171 -1.4578 -1.6119 32 1 4.8533 -0.3128 -1.5894 33 1 4.0587 0.4558 -0.1982 34 1 6.3455 -0.2045 0.3416 35 1 5.9389 -1.8925 -0.0568 36 1 4.5360 -0.2139 2.0778 37 1 5.7851 -1.4424 2.4045 38 1 3.5074 -2.3860 2.6727 39 1 4.3812 -3.1694 1.3404 40 1 -0.5013 -1.0774 2.6806 41 1 0.6271 -2.3666 3.1632 42 1 0.9307 -1.2749 5.3689 43 1 -0.1976 0.0142 4.8862 44 1 -1.3279 -0.9411 8.2583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245339044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:55 Heat of formation + Delta-G solvation = -90.591519 kcal Electronic energy + Delta-G solvation = -24582.554196 eV Core-core repulsion = 21239.999182 eV Total energy + Delta-G solvation = -3342.555014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.27354 -36.83703 -35.47077 -35.24159 -33.88563 -32.34621 -31.16066 -30.70578 -28.97303 -25.89785 -25.50018 -22.74639 -22.09539 -21.62947 -20.79694 -19.59126 -18.16141 -17.13729 -16.34691 -16.09549 -15.57983 -15.13235 -14.87024 -14.58750 -14.48275 -14.17049 -13.82249 -13.41299 -13.04711 -12.92359 -12.60466 -12.47230 -12.30962 -11.86969 -11.72376 -11.70556 -11.67194 -11.47007 -11.43871 -11.14000 -11.07941 -11.05590 -10.93301 -10.53305 -10.46172 -10.36522 -10.27138 -10.09903 -9.79694 -9.71344 -9.26719 -8.64155 -8.50285 -6.12367 -4.17921 0.78900 3.09779 3.25881 3.32095 3.34937 4.26527 4.32348 4.38641 4.43226 4.65760 4.76055 4.95687 4.99251 5.19916 5.22739 5.27858 5.29974 5.40042 5.45153 5.50897 5.52702 5.57670 5.65811 5.70194 5.74065 5.76728 5.84644 5.94202 5.99094 6.07577 6.20978 6.25720 6.28993 6.37309 6.42727 6.50263 6.55516 6.63029 6.79388 7.29912 7.36147 7.80672 8.17941 8.85427 9.46821 10.98707 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.004461 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.175892 B = 6275.344098 C = 6653.493019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.153 3.847 3 H 0.076 0.924 4 C -0.122 4.122 5 C -0.090 4.090 6 H 0.093 0.907 7 C -0.111 4.111 8 C -0.123 4.123 9 C -0.106 4.106 10 C -0.142 4.142 11 C 0.159 3.841 12 H 0.062 0.938 13 N -1.006 6.006 14 S 2.602 3.398 15 O -0.953 6.953 16 O -0.965 6.965 17 C -0.592 4.592 18 C 0.029 3.971 19 C -0.519 4.519 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.917 -1.466 -18.817 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.047 3.953 3 H 0.094 0.906 4 C -0.161 4.161 5 C -0.110 4.110 6 H 0.111 0.889 7 C -0.149 4.149 8 C -0.161 4.161 9 C -0.144 4.144 10 C -0.180 4.180 11 C 0.052 3.948 12 H 0.080 0.920 13 N -0.843 5.843 14 S 2.702 3.298 15 O -0.943 6.943 16 O -0.955 6.955 17 C -0.725 4.725 18 C -0.010 4.010 19 C -0.559 4.559 20 H 0.079 0.921 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.411 -0.692 -18.079 20.393 hybrid contribution -1.366 -1.030 0.244 1.728 sum 8.045 -1.722 -17.834 19.641 Atomic orbital electron populations 1.22384 0.95318 1.02736 1.03321 1.21267 0.93579 0.96018 0.84471 0.90586 1.22977 0.97301 0.99366 0.96463 1.22347 0.94912 0.98326 0.95435 0.88917 1.21010 0.95547 0.99052 0.99277 1.21142 0.97580 1.00969 0.96360 1.21465 0.97746 1.00032 0.95164 1.21706 0.96414 0.98804 1.01082 1.20781 0.92407 0.87764 0.93828 0.92026 1.58817 1.65091 1.38472 1.21877 1.05352 0.77154 0.75604 0.71649 1.93547 1.43937 1.83805 1.73045 1.93521 1.85178 1.31809 1.85041 1.30553 1.16918 1.14049 1.10949 1.18946 0.98964 0.98683 0.84377 1.20997 1.15141 1.23488 0.96262 0.92088 1.25065 0.97209 0.95574 0.96595 1.69958 1.41253 1.36612 1.05055 0.86476 0.82122 0.80278 0.78465 1.20440 1.20979 1.19757 0.91597 0.91123 0.91727 0.90408 0.90620 0.92381 0.91868 0.92278 0.92440 0.91071 0.92083 0.88702 0.91437 0.86388 0.86407 0.94835 0.95069 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.22 37.16 0.34 -1.73 16 2 C 0.15 1.82 2.56 -66.66 -0.17 1.65 16 3 H 0.08 0.95 7.86 -51.93 -0.41 0.55 16 4 C -0.12 -1.08 5.86 -24.37 -0.14 -1.22 16 5 C -0.09 -0.85 3.68 -88.52 -0.33 -1.18 16 6 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 7 C -0.11 -1.10 4.77 -28.16 -0.13 -1.24 16 8 C -0.12 -1.29 5.83 -28.04 -0.16 -1.46 16 9 C -0.11 -1.43 5.25 -26.67 -0.14 -1.57 16 10 C -0.14 -1.85 4.76 -27.71 -0.13 -1.98 16 11 C 0.16 1.89 2.97 -68.32 -0.20 1.69 16 12 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 13 N -1.01 -14.17 2.94 -99.26 -0.29 -14.46 16 14 S 2.60 48.20 5.10 -107.50 -0.55 47.65 16 15 O -0.95 -19.08 12.16 -57.54 -0.70 -19.78 16 16 O -0.96 -20.55 16.95 -57.54 -0.98 -21.52 16 17 C -0.59 -11.70 6.11 37.16 0.23 -11.47 16 18 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 19 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 23 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 H 0.07 0.91 7.33 -51.93 -0.38 0.53 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.08 0.58 7.99 -51.93 -0.41 0.16 16 31 H 0.08 0.59 7.86 -51.93 -0.41 0.18 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.72 6.98 -51.93 -0.36 0.36 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 1.14 6.25 -51.93 -0.32 0.81 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.09 1.46 5.86 -51.93 -0.30 1.15 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.12 2.15 8.07 -51.92 -0.42 1.73 16 41 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -32.83 343.79 -10.65 -43.48 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.64 Total: 0.21 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: -1.39 Total: -31.12 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.44 Total: -40.36 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -1.67 Total: -41.30 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 48.20 SS G_CDS: -0.55 Total: 47.65 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.83 -10.65 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245339044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.115 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds