Wall clock time and date at job start Fri Apr 10 2020 14:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46962 * 2 1 4 4 C 1.36480 * 120.00220 * 274.61219 * 3 2 1 5 5 H 1.07998 * 120.00138 * 154.10383 * 4 3 2 6 6 C 1.39303 * 120.00007 * 333.82734 * 4 3 2 7 7 N 1.31203 * 120.00191 * 156.28522 * 6 4 3 8 8 Si 1.86806 * 119.99849 * 336.29039 * 6 4 3 9 9 H 1.48497 * 109.47047 * 95.78453 * 8 6 4 10 10 H 1.48496 * 109.46945 * 215.78560 * 8 6 4 11 11 H 1.48496 * 109.46877 * 335.78316 * 8 6 4 12 12 C 1.34777 * 120.00056 * 94.61158 * 3 2 1 13 13 O 1.21656 * 120.00260 * 341.34528 * 12 3 2 14 14 C 1.47391 * 120.00276 * 161.35019 * 12 3 2 15 15 C 1.38192 * 120.65361 * 154.24735 * 14 12 3 16 16 C 1.39858 * 119.02625 * 180.02562 * 15 14 12 17 17 N 1.31423 * 120.27440 * 359.97438 * 16 15 14 18 18 C 1.33266 * 121.37680 * 0.02562 * 17 16 15 19 19 C 1.40878 * 132.34916 * 179.97438 * 18 17 16 20 20 C 1.46746 * 126.51321 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00487 * 179.97438 * 20 19 18 22 22 O 1.21690 * 119.99884 * 359.97438 * 20 19 18 23 23 C 1.40446 * 106.97595 * 179.97438 * 19 18 17 24 24 N 1.30839 * 108.75062 * 359.97438 * 23 19 18 25 25 N 1.36634 * 120.98161 * 359.71561 * 18 17 16 26 26 H 1.09005 * 109.46942 * 184.98947 * 1 2 3 27 27 H 1.08998 * 109.47026 * 304.98848 * 1 2 3 28 28 H 1.08996 * 109.47053 * 64.98762 * 1 2 3 29 29 H 1.08995 * 109.47725 * 239.99910 * 2 1 3 30 30 H 1.09000 * 109.47329 * 119.99700 * 2 1 3 31 31 H 0.97000 * 120.00041 * 180.02562 * 7 6 4 32 32 H 1.08003 * 120.48961 * 359.97414 * 15 14 12 33 33 H 1.08000 * 119.86623 * 179.97438 * 16 15 14 34 34 H 0.97007 * 119.99297 * 0.02562 * 21 20 19 35 35 H 0.96995 * 120.00660 * 179.97438 * 21 20 19 36 36 H 1.08006 * 125.62641 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1562 2.0564 -1.1781 5 1 2.1016 3.1349 -1.1920 6 6 2.3730 1.3546 -2.3617 7 7 2.0517 1.8952 -3.5132 8 14 3.1211 -0.3563 -2.3095 9 1 2.0378 -1.3714 -2.3413 10 1 4.0099 -0.5439 -3.4843 11 1 3.9104 -0.5135 -1.0616 12 6 2.3314 1.9853 1.1634 13 8 1.9057 1.5416 2.2131 14 6 3.1894 3.1837 1.1641 15 6 3.1084 4.1078 2.1884 16 6 3.9383 5.2330 2.1545 17 7 4.7817 5.4046 1.1613 18 6 4.8710 4.5222 0.1666 19 6 5.6743 4.4737 -0.9897 20 6 6.6786 5.4631 -1.3973 21 7 7.3769 5.2847 -2.5361 22 8 6.8808 6.4446 -0.7070 23 6 5.3323 3.2980 -1.6776 24 7 4.3995 2.6737 -1.0053 25 7 4.0897 3.4015 0.1483 26 1 -0.3633 -1.0238 0.0894 27 1 -0.3633 0.5893 0.8419 28 1 -0.3633 0.4345 -0.9312 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.2024 1.4064 -4.3374 32 1 2.4138 3.9636 3.0028 33 1 3.8859 5.9640 2.9479 34 1 7.2153 4.5024 -3.0865 35 1 8.0404 5.9388 -2.8058 36 1 5.7675 2.9643 -2.6081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320441669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:42 Heat of formation + Delta-G solvation = 88.333722 kcal Electronic energy + Delta-G solvation = -25468.970195 eV Core-core repulsion = 21764.337845 eV Total energy + Delta-G solvation = -3704.632350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.80834 -39.18448 -38.44729 -37.33498 -35.52275 -33.45658 -33.10103 -32.67875 -30.49310 -30.39830 -28.77852 -25.71830 -24.96001 -23.68151 -23.00943 -22.00234 -20.60085 -19.21928 -18.28114 -17.42741 -17.15200 -16.64583 -16.52141 -15.78755 -15.60042 -15.43603 -14.85888 -14.33158 -14.10063 -13.81203 -13.57055 -13.48291 -13.15113 -12.99254 -12.63967 -12.50274 -12.21369 -12.06211 -11.65627 -11.38349 -11.10127 -10.87374 -10.47346 -10.40148 -10.00790 -9.68733 -9.50360 -9.29395 -9.19600 -8.96092 -8.93578 -8.39548 -7.38258 -7.02043 -4.17647 0.57423 1.26965 2.49377 2.66646 2.81144 2.96926 3.03103 3.29315 3.69470 3.79071 3.82389 4.01499 4.18218 4.31237 4.50617 4.79748 5.08972 5.30752 5.38331 5.43436 5.54353 5.71845 5.77213 5.84068 5.97044 6.00888 6.13713 6.37225 6.42661 6.64240 6.73888 6.78705 6.99998 7.17008 7.45525 7.72788 7.75547 8.02934 8.14512 8.40849 8.79869 8.80899 9.17612 10.03800 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.007238 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.865471 B = 3867.508823 C = 5288.510759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.097 3.903 3 N -0.412 5.412 4 C -0.254 4.254 5 H 0.106 0.894 6 C 0.078 3.922 7 N -0.810 5.810 8 Si 0.900 3.100 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.258 1.258 12 C 0.461 3.539 13 O -0.591 6.591 14 C 0.179 3.821 15 C -0.193 4.193 16 C 0.163 3.837 17 N -0.461 5.461 18 C 0.319 3.681 19 C -0.312 4.312 20 C 0.604 3.396 21 N -0.861 5.861 22 O -0.547 6.547 23 C 0.090 3.910 24 N -0.225 5.225 25 N -0.293 5.293 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.286 0.714 32 H 0.166 0.834 33 H 0.177 0.823 34 H 0.397 0.603 35 H 0.398 0.602 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 -0.775 0.472 3.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.025 4.025 3 N -0.127 5.127 4 C -0.386 4.386 5 H 0.124 0.876 6 C -0.137 4.137 7 N -0.442 5.442 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.182 1.182 12 C 0.254 3.746 13 O -0.479 6.479 14 C 0.060 3.940 15 C -0.218 4.218 16 C -0.014 4.014 17 N -0.174 5.174 18 C 0.085 3.915 19 C -0.329 4.329 20 C 0.392 3.608 21 N -0.424 5.424 22 O -0.424 6.424 23 C -0.092 4.092 24 N -0.044 5.044 25 N -0.066 5.066 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.184 0.816 33 H 0.194 0.806 34 H 0.224 0.776 35 H 0.228 0.772 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.059 -0.837 1.116 3.362 hybrid contribution 0.502 -0.797 -0.888 1.295 sum 3.561 -1.635 0.228 3.925 Atomic orbital electron populations 1.21980 0.95065 1.01328 1.03084 1.21794 0.95664 0.83782 1.01286 1.43842 1.50719 1.11802 1.06319 1.19254 1.43175 0.93728 0.82459 0.87603 1.25393 0.94288 0.99661 0.94346 1.69655 1.36439 1.39364 0.98752 0.86542 0.79601 0.82141 0.78867 1.20179 1.21156 1.18204 1.17094 0.87291 0.86103 0.84138 1.90715 1.59058 1.67221 1.30885 1.20988 0.91691 0.96030 0.85272 1.22113 1.04743 0.94789 1.00157 1.23282 0.88349 0.95077 0.94660 1.67952 1.21419 1.26665 1.01342 1.20294 0.91948 0.84629 0.94598 1.19006 1.11055 1.02985 0.99881 1.16908 0.79455 0.84337 0.80061 1.43575 1.43883 1.28967 1.26013 1.90818 1.67637 1.30454 1.53534 1.24202 0.92954 0.92618 0.99378 1.78805 1.15054 1.17389 0.93127 1.47231 1.25734 1.17793 1.15802 0.92471 0.91774 0.91760 0.92281 0.90209 0.90279 0.81614 0.80631 0.77558 0.77165 0.79627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 10.21 37.16 0.38 -2.40 16 2 C 0.10 1.95 5.01 -4.04 -0.02 1.93 16 3 N -0.41 -9.29 2.35 -116.07 -0.27 -9.56 16 4 C -0.25 -5.99 5.94 -15.09 -0.09 -6.08 16 5 H 0.11 2.79 7.02 -52.49 -0.37 2.42 16 6 C 0.08 1.78 4.58 -17.42 -0.08 1.70 16 7 N -0.81 -19.18 13.95 55.51 0.77 -18.41 16 8 Si 0.90 18.52 24.36 -169.99 -4.14 14.38 16 9 H -0.27 -5.37 6.81 56.52 0.38 -4.99 16 10 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 11 H -0.26 -5.50 7.03 56.52 0.40 -5.11 16 12 C 0.46 10.45 7.31 -12.53 -0.09 10.36 16 13 O -0.59 -13.95 16.47 5.23 0.09 -13.87 16 14 C 0.18 3.77 6.11 -81.63 -0.50 3.27 16 15 C -0.19 -3.32 9.67 -38.99 -0.38 -3.69 16 16 C 0.16 2.62 11.27 -17.12 -0.19 2.43 16 17 N -0.46 -9.23 10.21 -12.04 -0.12 -9.35 16 18 C 0.32 6.78 7.75 -155.87 -1.21 5.57 16 19 C -0.31 -6.11 6.17 -104.63 -0.65 -6.76 16 20 C 0.60 11.06 8.06 -12.82 -0.10 10.96 16 21 N -0.86 -10.82 8.86 30.28 0.27 -10.56 16 22 O -0.55 -12.00 17.57 5.20 0.09 -11.90 16 23 C 0.09 1.66 11.44 -17.14 -0.20 1.47 16 24 N -0.23 -4.84 7.52 30.75 0.23 -4.61 16 25 N -0.29 -6.35 3.22 -8.44 -0.03 -6.38 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 1.21 1.78 -51.93 -0.09 1.11 16 30 H 0.08 1.56 7.60 -51.93 -0.39 1.17 16 31 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 32 H 0.17 2.46 7.89 -52.48 -0.41 2.05 16 33 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.40 3.90 7.75 -40.82 -0.32 3.58 16 35 H 0.40 4.20 8.93 -40.82 -0.36 3.83 16 36 H 0.19 2.59 7.46 -52.48 -0.39 2.20 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -31.79 308.19 -4.78 -36.57 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -3.19 Total: 10.30 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: -3.12 Total: 18.75 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.85 Total: -58.86 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: 0.18 Total: -25.77 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.14 Total: 14.38 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.79 -4.78 -36.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320441669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.902 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds