Wall clock time and date at job start Fri Apr 10 2020 14:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46962 * 2 1 4 4 C 1.36480 * 120.00220 * 274.61219 * 3 2 1 5 5 H 1.07998 * 120.00138 * 154.10383 * 4 3 2 6 6 C 1.39303 * 120.00007 * 333.82734 * 4 3 2 7 7 N 1.31203 * 120.00191 * 156.28522 * 6 4 3 8 8 Si 1.86806 * 119.99849 * 336.29039 * 6 4 3 9 9 H 1.48497 * 109.47047 * 95.78453 * 8 6 4 10 10 H 1.48496 * 109.46945 * 215.78560 * 8 6 4 11 11 H 1.48496 * 109.46877 * 335.78316 * 8 6 4 12 12 C 1.34777 * 120.00056 * 94.61158 * 3 2 1 13 13 O 1.21656 * 120.00260 * 341.34528 * 12 3 2 14 14 C 1.47391 * 120.00276 * 161.35019 * 12 3 2 15 15 C 1.38192 * 120.65361 * 154.24735 * 14 12 3 16 16 C 1.39858 * 119.02625 * 180.02562 * 15 14 12 17 17 N 1.31423 * 120.27440 * 359.97438 * 16 15 14 18 18 C 1.33266 * 121.37680 * 0.02562 * 17 16 15 19 19 C 1.40878 * 132.34916 * 179.97438 * 18 17 16 20 20 C 1.46746 * 126.51321 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00487 * 179.97438 * 20 19 18 22 22 O 1.21690 * 119.99884 * 359.97438 * 20 19 18 23 23 C 1.40446 * 106.97595 * 179.97438 * 19 18 17 24 24 N 1.30839 * 108.75062 * 359.97438 * 23 19 18 25 25 N 1.36634 * 120.98161 * 359.71561 * 18 17 16 26 26 H 1.09005 * 109.46942 * 184.98947 * 1 2 3 27 27 H 1.08998 * 109.47026 * 304.98848 * 1 2 3 28 28 H 1.08996 * 109.47053 * 64.98762 * 1 2 3 29 29 H 1.08995 * 109.47725 * 239.99910 * 2 1 3 30 30 H 1.09000 * 109.47329 * 119.99700 * 2 1 3 31 31 H 0.97000 * 120.00041 * 180.02562 * 7 6 4 32 32 H 1.08003 * 120.48961 * 359.97414 * 15 14 12 33 33 H 1.08000 * 119.86623 * 179.97438 * 16 15 14 34 34 H 0.97007 * 119.99297 * 0.02562 * 21 20 19 35 35 H 0.96995 * 120.00660 * 179.97438 * 21 20 19 36 36 H 1.08006 * 125.62641 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1562 2.0564 -1.1781 5 1 2.1016 3.1349 -1.1920 6 6 2.3730 1.3546 -2.3617 7 7 2.0517 1.8952 -3.5132 8 14 3.1211 -0.3563 -2.3095 9 1 2.0378 -1.3714 -2.3413 10 1 4.0099 -0.5439 -3.4843 11 1 3.9104 -0.5135 -1.0616 12 6 2.3314 1.9853 1.1634 13 8 1.9057 1.5416 2.2131 14 6 3.1894 3.1837 1.1641 15 6 3.1084 4.1078 2.1884 16 6 3.9383 5.2330 2.1545 17 7 4.7817 5.4046 1.1613 18 6 4.8710 4.5222 0.1666 19 6 5.6743 4.4737 -0.9897 20 6 6.6786 5.4631 -1.3973 21 7 7.3769 5.2847 -2.5361 22 8 6.8808 6.4446 -0.7070 23 6 5.3323 3.2980 -1.6776 24 7 4.3995 2.6737 -1.0053 25 7 4.0897 3.4015 0.1483 26 1 -0.3633 -1.0238 0.0894 27 1 -0.3633 0.5893 0.8419 28 1 -0.3633 0.4345 -0.9312 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.2024 1.4064 -4.3374 32 1 2.4138 3.9636 3.0028 33 1 3.8859 5.9640 2.9479 34 1 7.2153 4.5024 -3.0865 35 1 8.0404 5.9388 -2.8058 36 1 5.7675 2.9643 -2.6081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320441669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:41 Heat of formation + Delta-G solvation = 63.656801 kcal Electronic energy + Delta-G solvation = -25470.040267 eV Core-core repulsion = 21764.337845 eV Total energy + Delta-G solvation = -3705.702422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.34554 -40.84130 -39.91932 -38.83797 -37.23009 -34.99454 -34.43968 -34.33280 -31.99429 -31.94049 -30.28209 -27.38492 -26.54059 -25.14569 -24.53091 -23.49493 -22.12848 -20.80097 -19.80767 -19.00452 -18.59597 -18.20360 -17.94322 -17.38776 -17.01799 -16.96348 -16.42695 -15.97719 -15.66675 -15.28329 -15.12084 -14.93517 -14.68790 -14.52083 -14.21427 -13.97066 -13.78948 -13.58902 -13.16415 -12.90810 -12.72877 -12.40948 -12.06931 -11.99343 -11.63738 -11.32914 -11.03578 -10.77299 -10.57778 -10.54425 -10.47424 -10.09163 -8.92315 -8.68881 -5.95329 -0.90548 -0.20938 0.96408 1.10958 1.27757 1.33799 1.41178 1.67151 2.07260 2.16776 2.29655 2.68354 2.73776 2.84621 2.97994 3.32585 3.54352 3.82016 3.94215 4.01451 4.10552 4.21658 4.30433 4.34167 4.57964 4.65388 4.71218 4.89178 5.01984 5.10368 5.27242 5.31763 5.52668 5.71080 6.03566 6.05820 6.47303 6.58293 6.67752 6.72994 7.08801 7.44383 7.52297 8.42622 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.007238 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.865471 B = 3867.508823 C = 5288.510759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.089 3.911 3 N -0.422 5.422 4 C -0.270 4.270 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.853 5.853 8 Si 0.936 3.064 9 H -0.258 1.258 10 H -0.277 1.277 11 H -0.273 1.273 12 C 0.461 3.539 13 O -0.603 6.603 14 C 0.144 3.856 15 C -0.167 4.167 16 C 0.185 3.815 17 N -0.480 5.480 18 C 0.290 3.710 19 C -0.321 4.321 20 C 0.604 3.396 21 N -0.831 5.831 22 O -0.588 6.588 23 C 0.094 3.906 24 N -0.255 5.255 25 N -0.297 5.297 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.290 0.710 32 H 0.196 0.804 33 H 0.235 0.765 34 H 0.413 0.587 35 H 0.413 0.587 36 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 -0.681 1.340 4.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 N -0.137 5.137 4 C -0.401 4.401 5 H 0.086 0.914 6 C -0.149 4.149 7 N -0.487 5.487 8 Si 0.763 3.237 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.199 1.199 12 C 0.253 3.747 13 O -0.492 6.492 14 C 0.026 3.974 15 C -0.192 4.192 16 C 0.007 3.993 17 N -0.193 5.193 18 C 0.057 3.943 19 C -0.338 4.338 20 C 0.391 3.609 21 N -0.396 5.396 22 O -0.470 6.470 23 C -0.088 4.088 24 N -0.074 5.074 25 N -0.069 5.069 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.213 0.787 33 H 0.251 0.749 34 H 0.244 0.756 35 H 0.245 0.755 36 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.785 -0.792 1.893 4.306 hybrid contribution 0.398 -0.604 -0.858 1.123 sum 4.183 -1.397 1.035 4.530 Atomic orbital electron populations 1.21914 0.93337 1.03216 1.02062 1.21957 0.97199 0.82767 1.01273 1.43859 1.51422 1.12554 1.05871 1.18642 1.46320 0.91975 0.83163 0.91448 1.25631 0.93960 1.01508 0.93757 1.69687 1.38911 1.40842 0.99260 0.85991 0.79364 0.80214 0.78125 1.18540 1.20385 1.19877 1.17451 0.86735 0.86478 0.84073 1.90679 1.59317 1.67913 1.31276 1.21305 0.91951 0.97250 0.86919 1.22672 1.03976 0.93530 0.98995 1.24258 0.85724 0.94998 0.94305 1.68052 1.22529 1.26744 1.01955 1.20774 0.92715 0.84995 0.95785 1.19358 1.11188 1.03584 0.99653 1.16868 0.79531 0.83477 0.81022 1.43269 1.42555 1.29614 1.24122 1.90791 1.69020 1.31913 1.55265 1.24781 0.91822 0.91947 1.00213 1.78738 1.16220 1.18723 0.93687 1.47279 1.25753 1.17813 1.16021 0.89079 0.92624 0.92853 0.92381 0.89961 0.89895 0.78736 0.74900 0.75604 0.75502 0.75854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 10.21 71.98 0.74 -4.41 16 2 C 0.09 3.60 5.01 86.38 0.43 4.03 16 3 N -0.42 -19.31 2.35 -639.38 -1.50 -20.81 16 4 C -0.27 -13.15 5.94 84.23 0.50 -12.65 16 5 H 0.07 3.75 7.02 -2.91 -0.02 3.73 16 6 C 0.06 2.91 4.58 85.04 0.39 3.30 16 7 N -0.85 -41.48 13.95 21.72 0.30 -41.17 16 8 Si 0.94 37.93 24.36 68.60 1.67 39.60 16 9 H -0.26 -9.69 6.81 99.48 0.68 -9.02 16 10 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 11 H -0.27 -11.65 7.03 99.48 0.70 -10.95 16 12 C 0.46 20.95 7.31 86.65 0.63 21.59 16 13 O -0.60 -28.12 16.47 -4.21 -0.07 -28.19 16 14 C 0.14 6.01 6.11 40.66 0.25 6.26 16 15 C -0.17 -5.34 9.67 22.65 0.22 -5.12 16 16 C 0.19 5.33 11.27 85.15 0.96 6.29 16 17 N -0.48 -18.41 10.21 -192.00 -1.96 -20.37 16 18 C 0.29 12.21 7.75 134.02 1.04 13.24 16 19 C -0.32 -12.38 6.17 -19.87 -0.12 -12.50 16 20 C 0.60 21.41 8.06 86.47 0.70 22.10 16 21 N -0.83 -19.10 8.86 -176.34 -1.56 -20.67 16 22 O -0.59 -25.42 17.57 -4.32 -0.08 -25.49 16 23 C 0.09 3.41 11.44 85.38 0.98 4.39 16 24 N -0.26 -11.07 7.52 -56.64 -0.43 -11.50 16 25 N -0.30 -12.91 3.22 -180.61 -0.58 -13.49 16 26 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 2.34 1.78 -2.39 0.00 2.34 16 30 H 0.08 3.20 7.60 -2.39 -0.02 3.18 16 31 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 32 H 0.20 5.07 7.89 -2.91 -0.02 5.04 16 33 H 0.23 3.88 8.06 -2.91 -0.02 3.85 16 34 H 0.41 7.01 7.75 -92.70 -0.72 6.29 16 35 H 0.41 7.69 8.93 -92.71 -0.83 6.86 16 36 H 0.23 5.86 7.46 -2.91 -0.02 5.84 16 Total: -1.00 -71.97 308.19 2.10 -69.87 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -0.40 Total: 25.69 kcal Atomic # 6 Polarization: 39.83 SS G_CDS: 6.71 Total: 46.54 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -5.73 Total: -128.01 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.15 Total: -53.69 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 1.67 Total: 39.60 kcal Total: -71.97 2.10 -69.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320441669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.523 kcal (2) G-P(sol) polarization free energy of solvation -71.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds