Wall clock time and date at job start Fri Apr 10 2020 14:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28805 * 125.91772 * 2 1 4 4 N 1.28661 * 111.77242 * 179.97438 * 3 2 1 5 5 C 1.34851 * 109.22481 * 0.02562 * 4 3 2 6 6 C 1.39676 * 134.77728 * 180.33258 * 5 4 3 7 7 C 1.38191 * 119.46331 * 180.18611 * 6 5 4 8 8 N 1.39866 * 119.80499 * 179.73323 * 7 6 5 9 9 C 1.34780 * 119.99939 * 324.60766 * 8 7 6 10 10 O 1.21384 * 119.99601 * 4.60481 * 9 8 7 11 11 C 1.49344 * 120.00070 * 184.60329 * 9 8 7 12 12 O 1.21366 * 119.99697 * 0.02562 * 11 9 8 13 13 N 1.34766 * 119.99951 * 179.97438 * 11 9 8 14 14 C 1.46500 * 120.00022 * 180.02562 * 13 11 9 15 15 C 1.50703 * 109.47216 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00302 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99849 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00445 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00104 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46813 * 59.99441 * 19 17 15 21 21 H 1.48500 * 109.47021 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46659 * 300.00025 * 19 17 15 23 23 C 1.39566 * 120.38933 * 359.45993 * 7 6 5 24 24 C 1.36569 * 120.64030 * 0.25195 * 23 7 6 25 25 C 1.37376 * 125.91688 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47411 * 270.02643 * 1 2 3 27 27 H 1.08996 * 109.47000 * 30.02615 * 1 2 3 28 28 H 1.09000 * 109.47201 * 150.02759 * 1 2 3 29 29 H 1.07994 * 120.26700 * 359.92193 * 6 5 4 30 30 H 0.96994 * 120.00045 * 144.32947 * 8 7 6 31 31 H 0.97001 * 120.00340 * 359.97438 * 13 11 9 32 32 H 1.08999 * 109.47214 * 299.99784 * 14 13 11 33 33 H 1.09003 * 109.47118 * 59.99935 * 14 13 11 34 34 H 0.96997 * 120.00434 * 180.02562 * 18 17 15 35 35 H 1.08001 * 119.67426 * 180.26673 * 23 7 6 36 36 H 1.08001 * 120.00584 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2206 1.0431 0.0000 4 7 3.4682 0.7287 0.0005 5 6 3.5876 -0.6145 0.0004 6 6 4.6622 -1.5067 0.0065 7 6 4.4167 -2.8666 0.0001 8 7 5.4876 -3.7663 0.0005 9 6 6.6182 -3.4686 -0.6701 10 8 6.7395 -2.3855 -1.2043 11 6 7.7216 -4.4714 -0.7559 12 8 7.5999 -5.5546 -0.2220 13 7 8.8518 -4.1739 -1.4268 14 6 9.9340 -5.1578 -1.5114 15 6 11.0753 -4.5818 -2.3094 16 1 11.0018 -3.5830 -2.7135 17 6 12.2130 -5.3305 -2.5244 18 7 12.3024 -6.5470 -2.0328 19 14 13.6281 -4.6164 -3.5129 20 1 14.1279 -3.3877 -2.8452 21 1 14.7249 -5.6138 -3.5987 22 1 13.1563 -4.2796 -4.8802 23 6 3.1066 -3.3475 -0.0010 24 6 2.0483 -2.4843 -0.0010 25 6 2.2708 -1.1126 0.0005 26 1 -0.3634 0.0005 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 5.6768 -1.1367 0.0118 30 1 5.4181 -4.6027 0.4867 31 1 8.9486 -3.3086 -1.8544 32 1 10.2806 -5.4038 -0.5077 33 1 9.5671 -6.0602 -2.0005 34 1 13.1029 -7.0735 -2.1838 35 1 2.9280 -4.4126 -0.0016 36 1 1.0386 -2.8676 -0.0022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328223374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:58 Heat of formation + Delta-G solvation = 54.622201 kcal Electronic energy + Delta-G solvation = -23006.821957 eV Core-core repulsion = 19300.727765 eV Total energy + Delta-G solvation = -3706.094192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.35972 -40.75204 -38.73183 -37.56768 -35.13681 -35.03606 -34.12731 -32.39156 -30.89167 -29.94696 -28.18835 -27.74799 -25.32121 -24.04401 -23.04296 -21.89630 -21.45495 -19.99257 -19.10521 -18.35357 -17.62463 -16.95584 -16.74364 -16.28408 -15.80174 -15.43304 -15.20029 -15.00440 -14.44146 -14.29224 -13.98097 -13.69690 -13.63388 -13.25446 -13.12481 -12.69995 -12.42597 -12.10072 -12.06542 -11.93519 -11.37215 -11.10615 -11.04288 -10.90742 -10.88996 -10.39715 -10.31431 -9.51388 -9.19933 -8.89029 -8.84253 -8.25545 -8.13337 -6.23029 -4.30540 0.35463 0.84084 1.75002 1.89457 2.11048 2.52994 3.25240 3.29643 3.30974 3.32018 3.59429 3.70229 3.99578 4.10232 4.30958 4.42412 4.51844 4.59903 4.76062 4.79857 4.90261 5.00874 5.10055 5.13753 5.57030 5.72555 5.81014 5.89990 5.99855 6.25797 6.52420 6.92316 7.05139 7.15221 7.33883 7.52778 7.78439 7.85338 8.11894 8.34089 8.52641 8.80419 9.35858 10.86909 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.033768 B = 0.002509 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.988361 B =11155.881893 C =11834.838720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.322 5.322 3 N -0.025 5.025 4 N -0.250 5.250 5 C 0.029 3.971 6 C -0.055 4.055 7 C 0.144 3.856 8 N -0.649 5.649 9 C 0.508 3.492 10 O -0.500 6.500 11 C 0.493 3.507 12 O -0.536 6.536 13 N -0.669 5.669 14 C 0.247 3.753 15 C -0.548 4.548 16 H 0.066 0.934 17 C 0.066 3.934 18 N -0.885 5.885 19 Si 0.907 3.093 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.096 4.096 24 C -0.085 4.085 25 C 0.009 3.991 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.157 0.843 30 H 0.426 0.574 31 H 0.405 0.595 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.268 0.732 35 H 0.145 0.855 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.387 7.539 5.304 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.123 5.123 3 N -0.005 5.005 4 N -0.126 5.126 5 C -0.096 4.096 6 C -0.080 4.080 7 C 0.047 3.953 8 N -0.296 5.296 9 C 0.291 3.709 10 O -0.373 6.373 11 C 0.271 3.729 12 O -0.415 6.415 13 N -0.318 5.318 14 C 0.127 3.873 15 C -0.586 4.586 16 H 0.084 0.916 17 C -0.138 4.138 18 N -0.522 5.522 19 Si 0.734 3.266 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.120 4.120 24 C -0.107 4.107 25 C -0.110 4.110 26 H 0.107 0.893 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.175 0.825 30 H 0.265 0.735 31 H 0.240 0.760 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.163 0.837 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.179 8.874 5.262 27.210 hybrid contribution 0.506 -0.817 -0.516 1.091 sum -24.673 8.056 4.746 26.385 Atomic orbital electron populations 1.22190 0.72363 1.05820 1.04785 1.47045 1.08617 1.03140 1.53487 1.77993 0.96941 1.12375 1.13216 1.75416 1.07365 1.11301 1.18468 1.19672 0.92613 0.91158 1.06169 1.20347 0.99072 0.89735 0.98817 1.17401 0.87074 0.88886 1.01984 1.43166 1.13010 1.22537 1.50920 1.20981 0.83565 0.88227 0.78143 1.90763 1.79263 1.23185 1.44069 1.19600 0.83921 0.87106 0.82267 1.90741 1.80432 1.23386 1.46905 1.46437 1.15360 1.20651 1.49348 1.19359 0.82542 0.87197 0.98222 1.21165 1.00446 1.01803 1.35168 0.91558 1.24935 0.98537 0.94720 0.95651 1.69950 1.28906 1.09298 1.44094 0.86419 0.81040 0.78797 0.80382 1.19922 1.21037 1.19945 1.20606 0.89987 1.00552 1.00827 1.19459 0.99851 0.87946 1.03437 1.19801 0.90918 0.91022 1.09269 0.89308 0.87995 0.88511 0.82535 0.73528 0.75990 0.94630 0.94662 0.92254 0.83750 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.32 11.40 59.85 0.68 1.00 16 2 N -0.32 -3.08 3.80 -65.48 -0.25 -3.33 16 3 N -0.02 -0.32 13.07 60.35 0.79 0.47 16 4 N -0.25 -3.79 12.43 32.04 0.40 -3.39 16 5 C 0.03 0.41 7.36 -85.04 -0.63 -0.22 16 6 C -0.05 -0.76 8.74 -39.06 -0.34 -1.10 16 7 C 0.14 1.68 6.29 -83.71 -0.53 1.16 16 8 N -0.65 -8.06 5.32 -10.28 -0.05 -8.12 16 9 C 0.51 8.14 7.72 -11.63 -0.09 8.05 16 10 O -0.50 -8.82 13.91 5.47 0.08 -8.74 16 11 C 0.49 9.44 7.89 -11.64 -0.09 9.34 16 12 O -0.54 -11.26 16.48 5.48 0.09 -11.17 16 13 N -0.67 -14.06 5.54 -61.94 -0.34 -14.40 16 14 C 0.25 6.27 5.43 -5.19 -0.03 6.24 16 15 C -0.55 -14.59 9.28 -34.44 -0.32 -14.91 16 16 H 0.07 1.68 7.60 -52.49 -0.40 1.28 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 19 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 C -0.10 -0.81 9.89 -39.69 -0.39 -1.20 16 24 C -0.08 -0.65 9.99 -39.91 -0.40 -1.05 16 25 C 0.01 0.09 6.94 -84.15 -0.58 -0.49 16 26 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.16 2.40 6.23 -52.49 -0.33 2.08 16 30 H 0.43 4.45 8.30 -40.82 -0.34 4.11 16 31 H 0.41 7.93 7.79 -40.82 -0.32 7.61 16 32 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -33.95 326.13 -4.95 -38.90 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -3.48 Total: 5.28 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -2.81 Total: 8.52 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 1.28 Total: -53.35 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.17 Total: -19.91 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.95 -4.95 -38.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328223374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.520 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds