Wall clock time and date at job start Fri Apr 10 2020 14:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47103 * 2 1 4 4 C 1.50698 * 109.47288 * 120.00158 * 2 1 3 5 5 H 1.08000 * 119.99820 * 119.99574 * 4 2 1 6 6 C 1.37878 * 119.99965 * 300.00132 * 4 2 1 7 7 N 1.31513 * 119.99952 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00048 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47215 * 90.00017 * 8 6 4 10 10 H 1.48498 * 109.47070 * 210.00419 * 8 6 4 11 11 H 1.48504 * 109.47047 * 330.00167 * 8 6 4 12 12 N 1.46503 * 109.46786 * 240.00221 * 2 1 3 13 13 C 1.46497 * 120.00055 * 299.99607 * 12 2 1 14 14 C 1.34781 * 119.99758 * 119.99884 * 12 2 1 15 15 O 1.21483 * 120.00145 * 5.33071 * 14 12 2 16 16 C 1.48282 * 119.99742 * 185.32404 * 14 12 2 17 17 N 1.31625 * 126.53014 * 186.26237 * 16 14 12 18 18 C 1.34833 * 105.57818 * 180.02562 * 17 16 14 19 19 C 1.48498 * 126.32029 * 180.02562 * 18 17 16 20 20 C 1.39390 * 120.09938 * 179.72637 * 19 18 17 21 21 N 1.32013 * 119.87838 * 179.70981 * 20 19 18 22 22 C 1.32195 * 120.08136 * 0.56360 * 21 20 19 23 23 C 1.38472 * 120.19462 * 359.71042 * 22 21 20 24 24 N 1.31986 * 120.12352 * 0.02562 * 23 22 21 25 25 N 1.30861 * 107.35966 * 0.02562 * 18 17 16 26 26 O 1.21285 * 110.24567 * 359.70253 * 25 18 17 27 27 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47098 * 299.99408 * 1 2 3 29 29 H 1.09000 * 109.47720 * 59.99667 * 1 2 3 30 30 H 0.97002 * 120.00291 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47137 * 95.29276 * 13 12 2 32 32 H 1.08998 * 109.47337 * 335.29242 * 13 12 2 33 33 H 1.08993 * 109.47483 * 215.28897 * 13 12 2 34 34 H 1.08007 * 120.05973 * 359.97390 * 20 19 18 35 35 H 1.08005 * 119.89777 * 179.68561 * 22 21 20 36 36 H 1.08002 * 119.93194 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6258 1.2798 2.6542 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 7 2.0182 -0.6906 -1.1962 13 6 1.6643 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.1666 1.0956 -1.8448 16 6 3.1897 -0.6955 -3.3506 17 7 4.0291 -0.2261 -4.2492 18 6 4.0783 -1.1592 -5.2212 19 6 4.8908 -1.0944 -6.4625 20 6 4.8472 -2.1410 -7.3820 21 7 5.5669 -2.0762 -8.4868 22 6 6.3363 -1.0258 -8.7158 23 6 6.3864 0.0132 -7.8018 24 7 5.6661 -0.0410 -6.6971 25 7 3.2779 -2.1327 -4.8688 26 8 2.7646 -1.8870 -3.7977 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.9041 -0.5276 4.4375 31 1 0.7907 -2.1448 -2.0779 32 1 1.4378 -2.5729 -0.4759 33 1 2.5011 -2.6053 -1.9030 34 1 4.2225 -3.0015 -7.1930 35 1 6.9277 -0.9782 -9.6182 36 1 7.0167 0.8691 -7.9929 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362136602.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:46 Heat of formation + Delta-G solvation = 88.562048 kcal Electronic energy + Delta-G solvation = -23762.973097 eV Core-core repulsion = 20058.350648 eV Total energy + Delta-G solvation = -3704.622449 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.03710 -42.19342 -41.10983 -37.91421 -37.19121 -35.45451 -35.06040 -34.35692 -32.70691 -31.89024 -28.06483 -27.28063 -27.11348 -26.75968 -25.53497 -24.36824 -23.19216 -21.25388 -19.72945 -19.37738 -18.97370 -18.60304 -18.03308 -17.84314 -17.66203 -17.37055 -16.80076 -16.16134 -16.01411 -15.33688 -15.21699 -14.81276 -14.31506 -14.22537 -14.03057 -13.86640 -13.70735 -13.54056 -13.09879 -13.05781 -12.81938 -12.67289 -12.60299 -12.54061 -12.07298 -11.84631 -11.69526 -11.44865 -11.35479 -10.77990 -10.37872 -10.34830 -9.72244 -8.33142 -6.39666 -1.02488 -0.61379 -0.11604 0.81143 0.84072 1.31632 1.41803 1.48983 1.54616 1.68138 1.91417 2.30530 2.55659 2.59590 3.02077 3.06806 3.18840 3.31931 3.44242 3.87588 4.01747 4.19527 4.25836 4.36120 4.41419 4.45881 4.52127 4.60632 4.72294 4.94306 5.06442 5.16642 5.21124 5.39385 5.53836 6.02867 6.04101 6.30061 6.44175 6.55754 6.63912 6.73846 7.25966 8.82334 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.037595 B = 0.003026 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.599540 B = 9250.273676 C = 9519.865551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.233 3.767 3 H 0.044 0.956 4 C -0.531 4.531 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.937 5.937 8 Si 0.937 3.063 9 H -0.250 1.250 10 H -0.299 1.299 11 H -0.256 1.256 12 N -0.560 5.560 13 C 0.065 3.935 14 C 0.602 3.398 15 O -0.532 6.532 16 C 0.166 3.834 17 N -0.423 5.423 18 C 0.210 3.790 19 C 0.117 3.883 20 C 0.096 3.904 21 N -0.449 5.449 22 C 0.086 3.914 23 C 0.064 3.936 24 N -0.439 5.439 25 N -0.347 5.347 26 O 0.127 5.873 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.269 0.731 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.188 0.812 35 H 0.227 0.773 36 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.470 -2.931 -24.245 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.131 3.869 3 H 0.062 0.938 4 C -0.570 4.570 5 H 0.070 0.930 6 C -0.172 4.172 7 N -0.576 5.576 8 Si 0.764 3.236 9 H -0.176 1.176 10 H -0.227 1.227 11 H -0.180 1.180 12 N -0.291 5.291 13 C -0.076 4.076 14 C 0.382 3.618 15 O -0.407 6.407 16 C -0.057 4.057 17 N -0.158 5.158 18 C -0.061 4.061 19 C -0.021 4.021 20 C -0.063 4.063 21 N -0.163 5.163 22 C -0.075 4.075 23 C -0.099 4.099 24 N -0.155 5.155 25 N -0.049 5.049 26 O 0.058 5.942 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.205 0.795 35 H 0.243 0.757 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.763 -2.800 -24.530 24.843 hybrid contribution -0.236 0.635 1.095 1.287 sum 2.527 -2.165 -23.435 23.670 Atomic orbital electron populations 1.22358 0.95279 1.03215 1.00619 1.19276 0.92603 0.93639 0.81340 0.93822 1.21278 1.32296 1.13556 0.89826 0.93023 1.25603 0.97015 0.99400 0.95208 1.69988 1.46779 1.42092 0.98701 0.86044 0.80027 0.80175 0.77395 1.17555 1.22720 1.17987 1.47898 1.46481 1.13874 1.20812 1.22232 1.02161 0.78964 1.04259 1.16333 0.80459 0.84912 0.80066 1.90838 1.55407 1.19039 1.75425 1.28281 0.94508 0.84770 0.98171 1.72190 1.15440 1.27039 1.01166 1.23628 0.98473 0.87465 0.96515 1.18801 0.97314 0.94655 0.91359 1.23794 0.96245 0.97570 0.88726 1.68714 1.05042 1.25152 1.17355 1.24878 0.93632 0.88066 1.00968 1.24647 0.95895 1.01339 0.88048 1.68234 1.03503 1.22768 1.21010 1.74790 1.10747 1.21497 0.97826 1.85619 1.51371 1.32352 1.24812 0.90303 0.93434 0.91787 0.92154 0.88702 0.88981 0.90532 0.79506 0.75689 0.76554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.78 8.67 71.98 0.62 -5.16 16 2 C 0.23 10.34 2.22 44.24 0.10 10.44 16 3 H 0.04 2.17 5.97 -2.38 -0.01 2.15 16 4 C -0.53 -28.05 8.54 25.60 0.22 -27.83 16 5 H 0.05 2.98 7.67 -2.91 -0.02 2.96 16 6 C 0.03 1.49 5.45 84.66 0.46 1.95 16 7 N -0.94 -55.45 13.96 21.45 0.30 -55.15 16 8 Si 0.94 42.38 24.37 68.60 1.67 44.05 16 9 H -0.25 -10.28 6.87 99.48 0.68 -9.59 16 10 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 11 H -0.26 -11.21 6.53 99.48 0.65 -10.56 16 12 N -0.56 -21.31 2.75 -829.75 -2.28 -23.60 16 13 C 0.07 1.87 8.31 127.77 1.06 2.93 16 14 C 0.60 23.93 7.69 86.92 0.67 24.60 16 15 O -0.53 -25.28 16.44 -3.66 -0.06 -25.34 16 16 C 0.17 5.66 7.77 87.49 0.68 6.34 16 17 N -0.42 -15.18 11.57 -302.62 -3.50 -18.68 16 18 C 0.21 6.30 7.90 137.41 1.09 7.39 16 19 C 0.12 2.94 6.76 42.00 0.28 3.23 16 20 C 0.10 1.88 10.87 84.94 0.92 2.80 16 21 N -0.45 -7.39 10.49 -194.36 -2.04 -9.42 16 22 C 0.09 0.87 11.22 84.69 0.95 1.82 16 23 C 0.06 0.84 11.22 84.73 0.95 1.79 16 24 N -0.44 -10.63 10.44 -184.20 -1.92 -12.55 16 25 N -0.35 -9.45 11.85 -58.09 -0.69 -10.14 16 26 O 0.13 3.54 8.32 69.90 0.58 4.12 16 27 H 0.08 2.61 7.67 -2.38 -0.02 2.59 16 28 H 0.05 1.83 3.27 -2.39 -0.01 1.83 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.87 7.10 -2.39 -0.02 2.85 16 33 H 0.08 1.97 6.00 -2.39 -0.01 1.96 16 34 H 0.19 3.07 7.87 -2.91 -0.02 3.05 16 35 H 0.23 0.00 8.06 -2.91 -0.02 -0.03 16 36 H 0.22 1.01 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -74.18 313.57 1.13 -73.05 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: 1.07 Total: 3.36 kcal Atomic # 6 Polarization: 22.29 SS G_CDS: 8.01 Total: 30.30 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -10.14 Total: -129.54 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: 0.52 Total: -21.22 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.67 Total: 44.05 kcal Total: -74.18 1.13 -73.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362136602.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.610 kcal (2) G-P(sol) polarization free energy of solvation -74.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds