Wall clock time and date at job start Fri Apr 10 2020 14:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86807 * 119.99901 * 2 1 4 4 H 1.48495 * 109.47114 * 89.99701 * 3 2 1 5 5 H 1.48495 * 109.47214 * 210.00211 * 3 2 1 6 6 H 1.48504 * 109.46924 * 330.00048 * 3 2 1 7 7 C 1.38814 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00050 * 201.88189 * 7 2 1 9 9 N 1.36931 * 119.99619 * 21.88246 * 7 2 1 10 10 C 1.46497 * 120.00343 * 34.79739 * 9 7 2 11 11 C 1.50704 * 109.47019 * 89.99956 * 10 9 7 12 12 N 1.30362 * 126.18454 * 89.69107 * 11 10 9 13 13 N 1.28666 * 109.53425 * 179.82379 * 12 11 10 14 14 C 1.31256 * 109.24442 * 0.44728 * 13 12 11 15 15 C 1.47818 * 126.38031 * 179.71443 * 14 13 12 16 16 C 1.39581 * 120.11521 * 179.74873 * 15 14 13 17 17 C 1.37908 * 119.87765 * 179.76515 * 16 15 14 18 18 C 1.38598 * 120.11560 * 0.50542 * 17 16 15 19 19 F 1.35103 * 119.87656 * 179.76788 * 18 17 16 20 20 C 1.38596 * 120.24038 * 359.74196 * 18 17 16 21 21 C 1.37902 * 120.11653 * 0.02562 * 20 18 17 22 22 O 1.34432 * 126.18362 * 269.99848 * 11 10 9 23 23 C 1.46505 * 119.99748 * 214.80097 * 9 7 2 24 24 C 1.52996 * 117.49852 * 12.46113 * 23 9 7 25 25 C 1.53004 * 60.00258 * 252.51329 * 24 23 9 26 26 H 0.97002 * 120.00475 * 0.44058 * 1 2 3 27 27 H 1.08998 * 109.47340 * 210.00183 * 10 9 7 28 28 H 1.08999 * 109.47191 * 330.00176 * 10 9 7 29 29 H 1.07997 * 120.06344 * 0.02562 * 16 15 14 30 30 H 1.08003 * 119.94180 * 180.25225 * 17 16 15 31 31 H 1.07992 * 119.94325 * 179.97438 * 20 18 17 32 32 H 1.07996 * 120.06281 * 180.02562 * 21 20 18 33 33 H 1.08994 * 115.55136 * 158.17375 * 23 9 7 34 34 H 1.08996 * 117.49945 * 359.97438 * 24 23 9 35 35 H 1.08997 * 117.50164 * 145.02447 * 24 23 9 36 36 H 1.09001 * 117.49772 * 252.51405 * 25 24 23 37 37 H 1.08997 * 117.49970 * 107.48484 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 1.4000 5 1 3.5476 1.4403 -0.7001 6 1 1.4475 2.6527 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0319 -1.2356 0.3491 9 7 1.3996 -2.3454 -0.4409 10 6 0.4369 -2.2829 -1.5434 11 6 1.1603 -2.4644 -2.8529 12 7 1.3921 -3.5980 -3.4534 13 7 2.0288 -3.3815 -4.5503 14 6 2.2350 -2.0921 -4.6835 15 6 2.9364 -1.4273 -5.8021 16 6 3.0777 -0.0387 -5.8137 17 6 3.7372 0.5760 -6.8573 18 6 4.2501 -0.1816 -7.8984 19 9 4.8912 0.4260 -8.9207 20 6 4.1081 -1.5603 -7.8944 21 6 3.4545 -2.1855 -6.8534 22 8 1.6882 -1.4871 -3.6101 23 6 1.7090 -3.6313 0.1893 24 6 2.4850 -3.6033 1.5076 25 6 3.1755 -4.0667 0.2232 26 1 -0.4851 0.8400 -0.0065 27 1 -0.3035 -3.0740 -1.4246 28 1 -0.0623 -1.3140 -1.5353 29 1 2.6750 0.5528 -5.0049 30 1 3.8507 1.6500 -6.8653 31 1 4.5092 -2.1459 -8.7083 32 1 3.3447 -3.2599 -6.8509 33 1 0.9559 -4.4093 0.0647 34 1 2.7657 -2.6283 1.9057 35 1 2.2424 -4.3629 2.2507 36 1 3.3869 -5.1311 0.1213 37 1 3.9099 -3.3964 -0.2234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072583010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:08 Heat of formation + Delta-G solvation = 68.630428 kcal Electronic energy + Delta-G solvation = -23900.172313 eV Core-core repulsion = 20174.765602 eV Total energy + Delta-G solvation = -3725.406711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.12532 -43.41296 -39.07583 -37.28935 -35.46632 -34.00637 -32.46150 -31.42274 -31.10884 -29.12815 -26.42474 -24.28800 -23.95657 -23.11828 -21.54008 -21.48824 -21.43008 -20.08052 -18.03374 -17.32460 -16.95653 -16.44101 -16.35665 -15.92473 -15.79424 -15.31780 -14.58181 -14.42731 -14.22428 -13.80767 -13.74551 -13.33166 -13.07434 -12.78929 -12.67313 -12.08589 -11.75512 -11.53865 -11.36072 -11.19317 -11.04275 -10.98235 -10.86129 -10.73289 -10.32312 -10.23262 -9.93275 -9.80944 -9.44688 -9.38311 -8.71127 -8.24163 -6.96072 -6.16851 -3.72348 0.46846 1.00857 1.99911 2.80092 2.93873 3.18655 3.26734 3.30811 3.52448 3.98790 4.17305 4.23655 4.51842 4.62443 4.78696 4.90792 5.01219 5.02861 5.12793 5.29169 5.53272 5.66231 5.77590 5.79761 5.84083 5.87408 5.95214 6.03085 6.08833 6.27647 6.31674 6.38597 6.39307 6.50306 6.57578 6.83395 7.02700 7.05370 7.53352 8.11194 8.76549 8.90853 9.39805 9.92071 10.84333 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.004452 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.008893 B = 6287.352501 C = 7392.317083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.021 3.979 3 Si 0.902 3.098 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.284 1.284 7 C -0.271 4.271 8 H 0.070 0.930 9 N -0.529 5.529 10 C 0.217 3.783 11 C 0.197 3.803 12 N -0.314 5.314 13 N -0.274 5.274 14 C 0.157 3.843 15 C -0.011 4.011 16 C -0.060 4.060 17 C -0.152 4.152 18 C 0.109 3.891 19 F -0.138 7.138 20 C -0.154 4.154 21 C -0.048 4.048 22 O -0.211 6.211 23 C 0.121 3.879 24 C -0.187 4.187 25 C -0.221 4.221 26 H 0.263 0.737 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 -0.776 -10.950 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.181 4.181 3 Si 0.730 3.270 4 H -0.207 1.207 5 H -0.200 1.200 6 H -0.209 1.209 7 C -0.400 4.400 8 H 0.088 0.912 9 N -0.244 5.244 10 C 0.086 3.914 11 C -0.015 4.015 12 N -0.162 5.162 13 N -0.123 5.123 14 C -0.052 4.052 15 C -0.013 4.013 16 C -0.080 4.080 17 C -0.171 4.171 18 C 0.089 3.911 19 F -0.116 7.116 20 C -0.173 4.173 21 C -0.067 4.067 22 O -0.089 6.089 23 C 0.013 3.987 24 C -0.225 4.225 25 C -0.261 4.261 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.149 0.851 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.122 -1.861 -11.130 12.014 hybrid contribution 0.782 2.173 0.076 2.311 sum 4.904 0.312 -11.054 12.098 Atomic orbital electron populations 1.69886 1.05652 1.26813 1.49482 1.25167 0.95116 0.99097 0.98739 0.86315 0.79667 0.82772 0.78292 1.20683 1.20042 1.20931 1.19034 0.95297 0.85207 1.40450 0.91241 1.43378 1.48717 1.02507 1.29802 1.20101 0.89601 1.06518 0.75170 1.31236 0.94235 0.80310 0.95746 1.74345 1.15805 1.23862 1.02219 1.74497 1.13064 1.12302 1.12410 1.25093 1.01252 0.88922 0.89929 1.17278 1.00117 0.92580 0.91302 1.21213 0.95827 0.93123 0.97863 1.21051 1.01012 1.01110 0.93922 1.17884 0.95949 0.91155 0.86151 1.91509 1.79229 1.83588 1.57320 1.21039 1.02809 0.92658 1.00754 1.21029 0.93901 1.01039 0.90762 1.84971 1.55613 1.40200 1.28154 1.21219 0.91650 0.89386 0.96411 1.23100 1.06020 1.02391 0.91037 1.23322 0.99958 0.99652 1.03176 0.92688 0.89646 0.85089 0.83820 0.83939 0.83866 0.83374 0.88493 0.88139 0.90247 0.90424 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.66 11.30 55.49 0.63 -22.03 16 2 C 0.02 0.52 4.97 -17.43 -0.09 0.43 16 3 Si 0.90 20.09 29.61 -169.99 -5.03 15.05 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.27 -6.83 8.20 -15.06 -0.12 -6.95 16 8 H 0.07 1.79 7.15 -52.49 -0.38 1.41 16 9 N -0.53 -12.33 2.78 -167.02 -0.47 -12.79 16 10 C 0.22 4.77 5.96 -5.19 -0.03 4.74 16 11 C 0.20 4.27 8.05 -12.90 -0.10 4.17 16 12 N -0.31 -6.78 12.22 32.58 0.40 -6.38 16 13 N -0.27 -5.53 11.92 32.07 0.38 -5.14 16 14 C 0.16 2.96 7.99 -13.88 -0.11 2.85 16 15 C -0.01 -0.16 5.87 -104.97 -0.62 -0.78 16 16 C -0.06 -0.80 9.72 -39.20 -0.38 -1.18 16 17 C -0.15 -1.70 10.01 -39.57 -0.40 -2.10 16 18 C 0.11 1.21 7.30 -39.32 -0.29 0.92 16 19 F -0.14 -1.54 17.26 2.25 0.04 -1.50 16 20 C -0.15 -1.60 10.01 -39.57 -0.40 -2.00 16 21 C -0.05 -0.59 9.69 -39.20 -0.38 -0.97 16 22 O -0.21 -4.50 10.67 3.96 0.04 -4.46 16 23 C 0.12 2.50 6.61 -67.93 -0.45 2.05 16 24 C -0.19 -3.55 9.78 -26.73 -0.26 -3.81 16 25 C -0.22 -4.24 10.13 -26.73 -0.27 -4.51 16 26 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 27 H 0.09 1.70 8.04 -51.93 -0.42 1.29 16 28 H 0.13 3.14 5.33 -51.93 -0.28 2.86 16 29 H 0.14 1.91 7.93 -52.49 -0.42 1.50 16 30 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.15 1.72 7.86 -52.49 -0.41 1.30 16 33 H 0.10 1.83 8.10 -51.93 -0.42 1.41 16 34 H 0.10 2.08 6.82 -51.93 -0.35 1.73 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -27.72 331.48 -6.83 -34.55 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.92 Total: 4.85 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -3.89 Total: -7.14 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.94 Total: -46.35 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: 0.04 Total: -4.46 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.72 -6.83 -34.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072583010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.181 kcal (2) G-P(sol) polarization free energy of solvation -27.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds