Wall clock time and date at job start Fri Apr 10 2020 14:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86807 * 119.99901 * 2 1 4 4 H 1.48495 * 109.47114 * 89.99701 * 3 2 1 5 5 H 1.48495 * 109.47214 * 210.00211 * 3 2 1 6 6 H 1.48504 * 109.46924 * 330.00048 * 3 2 1 7 7 C 1.38814 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00050 * 201.88189 * 7 2 1 9 9 N 1.36931 * 119.99619 * 21.88246 * 7 2 1 10 10 C 1.46497 * 120.00343 * 34.79739 * 9 7 2 11 11 C 1.50704 * 109.47019 * 89.99956 * 10 9 7 12 12 N 1.30362 * 126.18454 * 89.69107 * 11 10 9 13 13 N 1.28666 * 109.53425 * 179.82379 * 12 11 10 14 14 C 1.31256 * 109.24442 * 0.44728 * 13 12 11 15 15 C 1.47818 * 126.38031 * 179.71443 * 14 13 12 16 16 C 1.39581 * 120.11521 * 179.74873 * 15 14 13 17 17 C 1.37908 * 119.87765 * 179.76515 * 16 15 14 18 18 C 1.38598 * 120.11560 * 0.50542 * 17 16 15 19 19 F 1.35103 * 119.87656 * 179.76788 * 18 17 16 20 20 C 1.38596 * 120.24038 * 359.74196 * 18 17 16 21 21 C 1.37902 * 120.11653 * 0.02562 * 20 18 17 22 22 O 1.34432 * 126.18362 * 269.99848 * 11 10 9 23 23 C 1.46505 * 119.99748 * 214.80097 * 9 7 2 24 24 C 1.52996 * 117.49852 * 12.46113 * 23 9 7 25 25 C 1.53004 * 60.00258 * 252.51329 * 24 23 9 26 26 H 0.97002 * 120.00475 * 0.44058 * 1 2 3 27 27 H 1.08998 * 109.47340 * 210.00183 * 10 9 7 28 28 H 1.08999 * 109.47191 * 330.00176 * 10 9 7 29 29 H 1.07997 * 120.06344 * 0.02562 * 16 15 14 30 30 H 1.08003 * 119.94180 * 180.25225 * 17 16 15 31 31 H 1.07992 * 119.94325 * 179.97438 * 20 18 17 32 32 H 1.07996 * 120.06281 * 180.02562 * 21 20 18 33 33 H 1.08994 * 115.55136 * 158.17375 * 23 9 7 34 34 H 1.08996 * 117.49945 * 359.97438 * 24 23 9 35 35 H 1.08997 * 117.50164 * 145.02447 * 24 23 9 36 36 H 1.09001 * 117.49772 * 252.51405 * 25 24 23 37 37 H 1.08997 * 117.49970 * 107.48484 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 1.4000 5 1 3.5476 1.4403 -0.7001 6 1 1.4475 2.6527 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0319 -1.2356 0.3491 9 7 1.3996 -2.3454 -0.4409 10 6 0.4369 -2.2829 -1.5434 11 6 1.1603 -2.4644 -2.8529 12 7 1.3921 -3.5980 -3.4534 13 7 2.0288 -3.3815 -4.5503 14 6 2.2350 -2.0921 -4.6835 15 6 2.9364 -1.4273 -5.8021 16 6 3.0777 -0.0387 -5.8137 17 6 3.7372 0.5760 -6.8573 18 6 4.2501 -0.1816 -7.8984 19 9 4.8912 0.4260 -8.9207 20 6 4.1081 -1.5603 -7.8944 21 6 3.4545 -2.1855 -6.8534 22 8 1.6882 -1.4871 -3.6101 23 6 1.7090 -3.6313 0.1893 24 6 2.4850 -3.6033 1.5076 25 6 3.1755 -4.0667 0.2232 26 1 -0.4851 0.8400 -0.0065 27 1 -0.3035 -3.0740 -1.4246 28 1 -0.0623 -1.3140 -1.5353 29 1 2.6750 0.5528 -5.0049 30 1 3.8507 1.6500 -6.8653 31 1 4.5092 -2.1459 -8.7083 32 1 3.3447 -3.2599 -6.8509 33 1 0.9559 -4.4093 0.0647 34 1 2.7657 -2.6283 1.9057 35 1 2.2424 -4.3629 2.2507 36 1 3.3869 -5.1311 0.1213 37 1 3.9099 -3.3964 -0.2234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072583010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:07 Heat of formation + Delta-G solvation = 51.566540 kcal Electronic energy + Delta-G solvation = -23900.912258 eV Core-core repulsion = 20174.765602 eV Total energy + Delta-G solvation = -3726.146657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.03265 -45.01034 -40.07341 -38.94470 -37.08385 -35.69615 -33.94244 -32.69941 -32.36486 -30.60696 -28.09808 -26.00930 -25.24910 -24.24184 -23.04047 -22.97612 -22.76417 -21.79120 -19.14794 -18.78569 -18.38477 -18.04351 -17.61259 -17.35836 -16.81700 -16.69677 -16.33618 -15.93605 -15.41396 -15.38684 -14.74014 -14.70822 -14.30678 -13.90321 -13.78841 -13.66312 -13.38030 -13.28613 -12.97818 -12.83127 -12.75445 -12.58332 -12.27168 -12.20176 -12.05543 -11.88366 -11.62106 -11.20375 -10.95535 -10.54329 -10.30578 -9.50375 -8.76956 -8.04498 -5.64248 -0.68347 0.08545 0.57620 1.31590 1.39773 1.42862 1.44318 1.52171 2.38393 2.46192 2.78870 3.04271 3.06676 3.27209 3.36165 3.52401 3.67871 3.74655 3.98141 4.07343 4.22999 4.33175 4.38066 4.40505 4.41914 4.61652 4.71536 4.74151 4.82380 4.88285 4.93303 4.98741 5.03950 5.22338 5.24460 5.27461 5.47538 5.56831 5.64669 6.26189 6.90908 7.30519 7.56992 8.07316 8.93899 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.004452 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.008893 B = 6287.352501 C = 7392.317083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.016 4.016 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.278 4.278 8 H 0.056 0.944 9 N -0.544 5.544 10 C 0.223 3.777 11 C 0.182 3.818 12 N -0.320 5.320 13 N -0.295 5.295 14 C 0.175 3.825 15 C -0.045 4.045 16 C -0.065 4.065 17 C -0.147 4.147 18 C 0.117 3.883 19 F -0.133 7.133 20 C -0.141 4.141 21 C -0.041 4.041 22 O -0.228 6.228 23 C 0.098 3.902 24 C -0.176 4.176 25 C -0.210 4.210 26 H 0.262 0.738 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.137 0.863 30 H 0.166 0.834 31 H 0.176 0.824 32 H 0.154 0.846 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.468 -0.844 -12.539 13.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.215 4.215 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.408 4.408 8 H 0.074 0.926 9 N -0.260 5.260 10 C 0.093 3.907 11 C -0.030 4.030 12 N -0.167 5.167 13 N -0.142 5.142 14 C -0.034 4.034 15 C -0.047 4.047 16 C -0.084 4.084 17 C -0.165 4.165 18 C 0.097 3.903 19 F -0.112 7.112 20 C -0.159 4.159 21 C -0.061 4.061 22 O -0.107 6.107 23 C -0.009 4.009 24 C -0.214 4.214 25 C -0.251 4.251 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.129 0.871 29 H 0.155 0.845 30 H 0.184 0.816 31 H 0.194 0.806 32 H 0.172 0.828 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.330 -1.956 -12.731 13.939 hybrid contribution 0.509 2.205 0.376 2.294 sum 5.839 0.249 -12.354 13.667 Atomic orbital electron populations 1.69964 1.06421 1.27155 1.50593 1.25696 0.95727 1.01165 0.98934 0.85557 0.78438 0.80083 0.78152 1.20393 1.20455 1.20587 1.19041 0.94837 0.86384 1.40500 0.92590 1.43488 1.48863 1.02950 1.30699 1.19905 0.89602 1.05918 0.75294 1.30961 0.95329 0.80512 0.96246 1.74265 1.15911 1.23869 1.02693 1.74445 1.14483 1.12974 1.12330 1.25904 0.99202 0.88676 0.89585 1.17494 1.02321 0.93502 0.91376 1.21203 0.96281 0.92469 0.98484 1.21235 0.99895 1.02358 0.93014 1.17999 0.94991 0.91470 0.85828 1.91532 1.79002 1.83573 1.57077 1.21313 1.01353 0.92634 1.00634 1.21131 0.93375 1.01286 0.90284 1.84950 1.56121 1.40627 1.29024 1.21514 0.92809 0.88932 0.97634 1.23094 1.04901 1.02188 0.91199 1.23250 0.98359 1.00495 1.02960 0.92796 0.88152 0.87102 0.84546 0.81604 0.80624 0.82797 0.86749 0.90362 0.87075 0.87878 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.39 11.30 21.65 0.24 -47.14 16 2 C -0.02 -0.81 4.97 84.86 0.42 -0.39 16 3 Si 0.95 41.81 29.61 68.60 2.03 43.84 16 4 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.28 -14.35 8.20 84.04 0.69 -13.66 16 8 H 0.06 2.98 7.15 -2.91 -0.02 2.96 16 9 N -0.54 -25.80 2.78 -682.34 -1.90 -27.70 16 10 C 0.22 10.06 5.96 85.63 0.51 10.57 16 11 C 0.18 8.10 8.05 88.33 0.71 8.81 16 12 N -0.32 -13.95 12.22 -165.33 -2.02 -15.97 16 13 N -0.29 -11.96 11.92 -166.30 -1.98 -13.94 16 14 C 0.18 6.66 7.99 87.32 0.70 7.35 16 15 C -0.04 -1.30 5.87 -20.09 -0.12 -1.42 16 16 C -0.06 -1.64 9.72 22.52 0.22 -1.42 16 17 C -0.15 -2.90 10.01 22.28 0.22 -2.68 16 18 C 0.12 2.21 7.30 22.44 0.16 2.38 16 19 F -0.13 -2.49 17.26 44.97 0.78 -1.72 16 20 C -0.14 -2.46 10.01 22.28 0.22 -2.24 16 21 C -0.04 -0.94 9.69 22.52 0.22 -0.72 16 22 O -0.23 -9.97 10.67 -8.76 -0.09 -10.06 16 23 C 0.10 4.02 6.61 44.99 0.30 4.31 16 24 C -0.18 -6.51 9.78 30.59 0.30 -6.21 16 25 C -0.21 -7.94 10.13 30.60 0.31 -7.63 16 26 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 27 H 0.10 4.08 8.04 -2.39 -0.02 4.06 16 28 H 0.11 5.50 5.33 -2.39 -0.01 5.49 16 29 H 0.14 3.63 7.93 -2.91 -0.02 3.61 16 30 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.15 3.29 7.86 -2.91 -0.02 3.26 16 33 H 0.11 4.21 8.10 -2.39 -0.02 4.19 16 34 H 0.08 3.27 6.82 -2.39 -0.02 3.25 16 35 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 37 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -60.10 331.48 3.03 -57.07 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 1.11 Total: 18.55 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 4.87 Total: -2.93 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -5.66 Total: -104.75 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.09 Total: -10.06 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -60.10 3.03 -57.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072583010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.635 kcal (2) G-P(sol) polarization free energy of solvation -60.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds