Wall clock time and date at job start Fri Apr 10 2020 14:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 117.00046 * 2 1 4 4 C 1.38826 * 119.99691 * 0.02562 * 3 2 1 5 5 C 1.38200 * 120.17822 * 180.02562 * 4 3 2 6 6 C 1.38081 * 120.17705 * 359.97438 * 5 4 3 7 7 C 1.39305 * 119.99312 * 359.97438 * 6 5 4 8 8 C 1.48470 * 120.08885 * 179.72631 * 7 6 5 9 9 N 1.34046 * 126.67066 * 180.02562 * 8 7 6 10 10 N 1.28985 * 107.26704 * 179.97438 * 9 8 7 11 11 N 1.28730 * 108.94531 * 359.97438 * 10 9 8 12 12 C 1.46500 * 125.34223 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.46994 * 89.97567 * 12 11 10 14 14 O 1.21284 * 120.00062 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99741 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99992 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99857 * 359.97438 * 16 15 13 18 18 C 1.38948 * 120.00159 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99738 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00118 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46566 * 60.00067 * 20 18 16 22 22 H 1.48493 * 109.47127 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47244 * 300.00639 * 20 18 16 24 24 N 1.28878 * 109.31477 * 359.72588 * 11 10 9 25 25 C 1.38519 * 119.99450 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.46537 * 59.99734 * 1 2 3 27 27 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46868 * 300.00270 * 1 2 3 29 29 H 1.07996 * 119.90817 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.91224 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.00477 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.46954 * 209.97111 * 12 11 10 33 33 H 1.08993 * 109.47353 * 329.97343 * 12 11 10 34 34 H 0.97003 * 120.00334 * 359.97438 * 15 13 12 35 35 H 0.97005 * 119.99240 * 180.02562 * 19 18 16 36 36 H 1.07996 * 120.08893 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2899 2.3752 0.0005 5 6 1.9134 3.6085 0.0000 6 6 3.2919 3.6894 -0.0005 7 6 4.0577 2.5257 0.0000 8 6 5.5400 2.6102 -0.0067 9 7 6.4004 1.5823 -0.0075 10 7 7.5906 2.0794 -0.0147 11 7 7.5071 3.3640 -0.0189 12 6 8.6446 4.2872 -0.0279 13 6 9.0279 4.5981 -1.4518 14 8 8.4119 4.0975 -2.3688 15 7 10.0552 5.4325 -1.7062 16 6 10.4037 5.7159 -3.0015 17 1 9.8551 5.2701 -3.8181 18 6 11.4625 6.5766 -3.2638 19 7 12.1296 7.1194 -2.2702 20 14 11.9377 6.9620 -5.0287 21 1 10.7854 7.5877 -5.7261 22 1 13.0894 7.8993 -5.0378 23 1 12.3152 5.7061 -5.7253 24 7 6.2658 3.7104 -0.0203 25 6 3.4294 1.2832 0.0005 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.2115 2.3169 0.0014 30 1 1.3210 4.5115 0.0000 31 1 3.7762 4.6546 -0.0005 32 1 8.3682 5.2092 0.4836 33 1 9.4899 3.8272 0.4838 34 1 10.5477 5.8333 -0.9728 35 1 12.8685 7.7206 -2.4534 36 1 4.0188 0.3784 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108660639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:17 Heat of formation + Delta-G solvation = 85.335910 kcal Electronic energy + Delta-G solvation = -22967.774525 eV Core-core repulsion = 19263.012180 eV Total energy + Delta-G solvation = -3704.762345 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.96797 -40.24341 -38.54102 -37.66263 -34.81681 -34.07081 -33.17265 -31.63672 -31.24317 -30.27080 -28.64316 -27.50942 -25.13446 -24.31764 -23.23906 -22.11504 -21.32977 -19.91650 -18.51293 -18.24611 -17.38091 -16.74221 -16.34695 -16.02592 -15.96933 -15.69009 -15.16882 -14.66889 -14.45003 -14.12326 -13.94333 -13.62482 -13.39017 -13.09921 -12.76607 -12.55188 -12.19146 -11.90338 -11.75355 -11.64300 -11.51404 -11.17182 -11.07990 -10.77645 -10.68966 -10.57946 -10.49393 -10.40388 -9.74957 -8.93815 -8.67531 -8.34695 -8.24399 -6.63854 -4.06029 0.74507 1.29225 1.58515 2.13366 2.58250 2.99801 3.05504 3.16441 3.20780 3.49811 3.72461 3.90855 3.99916 4.43940 4.51321 4.60063 4.75751 4.85249 4.86709 4.98483 5.13893 5.14302 5.19337 5.24628 5.28593 5.43491 5.71073 5.78976 5.83301 6.01978 6.09362 6.24316 6.40223 6.42844 6.51622 7.17584 7.35530 7.76063 8.28776 8.62921 8.91858 9.19612 9.67947 10.52432 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.029918 B = 0.002562 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.669296 B =10924.959876 C =11199.428533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.123 3.877 4 C -0.197 4.197 5 C -0.082 4.082 6 C -0.119 4.119 7 C 0.040 3.960 8 C 0.192 3.808 9 N -0.279 5.279 10 N -0.048 5.048 11 N -0.102 5.102 12 C 0.114 3.886 13 C 0.419 3.581 14 O -0.578 6.578 15 N -0.541 5.541 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.029 3.971 19 N -0.892 5.892 20 Si 0.936 3.064 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.271 1.271 24 N -0.282 5.282 25 C -0.113 4.113 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.396 0.604 35 H 0.277 0.723 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.103 -5.912 8.921 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.078 3.922 4 C -0.217 4.217 5 C -0.100 4.100 6 C -0.139 4.139 7 C 0.037 3.963 8 C -0.087 4.087 9 N -0.150 5.150 10 N -0.040 5.040 11 N -0.013 5.013 12 C -0.011 4.011 13 C 0.202 3.798 14 O -0.463 6.463 15 N -0.176 5.176 16 C -0.434 4.434 17 H 0.124 0.876 18 C -0.174 4.174 19 N -0.532 5.532 20 Si 0.762 3.238 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.196 1.196 24 N -0.133 5.133 25 C -0.134 4.134 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.512 -6.478 8.303 20.434 hybrid contribution 0.031 0.912 -0.467 1.025 sum -17.481 -5.566 7.836 19.949 Atomic orbital electron populations 1.23060 0.78402 1.03965 1.01329 1.86092 1.21304 1.26648 1.88852 1.18740 0.91777 0.84338 0.97353 1.21339 1.00117 0.92346 1.07855 1.20841 0.94004 0.97197 0.98000 1.21154 0.93572 0.98080 1.01104 1.16918 0.84999 0.93437 1.00943 1.23343 0.95789 0.85114 1.04475 1.75953 0.94478 1.26012 1.18551 1.78887 1.17697 0.92601 1.14855 1.49389 1.05066 1.05153 1.41695 1.22114 0.84740 0.92958 1.01243 1.19402 0.85619 0.86300 0.88440 1.90639 1.55150 1.55478 1.45025 1.41692 1.27245 1.39207 1.09476 1.19691 1.14214 1.25851 0.83631 0.87631 1.25334 0.95865 0.96054 1.00186 1.69592 1.21291 1.30553 1.31768 0.85835 0.78160 0.78575 0.81256 1.19657 1.20707 1.19622 1.74806 0.90926 1.26734 1.20795 1.20341 0.91489 0.98017 1.03575 0.92606 0.88229 0.92641 0.85228 0.85047 0.84587 0.85017 0.84797 0.76962 0.91346 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.41 10.49 -19.43 -0.20 -3.61 16 3 C 0.12 1.44 6.68 -39.26 -0.26 1.18 16 4 C -0.20 -1.92 9.03 -39.38 -0.36 -2.27 16 5 C -0.08 -0.83 10.03 -39.65 -0.40 -1.22 16 6 C -0.12 -1.51 9.70 -39.24 -0.38 -1.89 16 7 C 0.04 0.60 5.87 -104.91 -0.62 -0.01 16 8 C 0.19 3.47 7.94 -156.30 -1.24 2.23 16 9 N -0.28 -5.37 12.23 32.16 0.39 -4.98 16 10 N -0.05 -0.95 13.23 60.35 0.80 -0.15 16 11 N -0.10 -1.92 3.48 -11.67 -0.04 -1.96 16 12 C 0.11 1.87 7.08 -5.19 -0.04 1.83 16 13 C 0.42 9.42 7.85 -10.98 -0.09 9.33 16 14 O -0.58 -15.78 16.01 5.55 0.09 -15.69 16 15 N -0.54 -12.68 5.29 -10.96 -0.06 -12.74 16 16 C -0.30 -8.07 9.68 -14.93 -0.14 -8.21 16 17 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.03 0.74 5.50 -17.47 -0.10 0.64 16 19 N -0.89 -22.71 13.05 55.50 0.72 -21.98 16 20 Si 0.94 20.15 29.55 -169.99 -5.02 15.13 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 N -0.28 -5.29 11.85 32.17 0.38 -4.91 16 25 C -0.11 -1.56 9.64 -39.11 -0.38 -1.94 16 26 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.13 0.88 6.28 -52.49 -0.33 0.56 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 31 H 0.14 1.70 7.88 -52.49 -0.41 1.28 16 32 H 0.13 1.71 8.14 -51.93 -0.42 1.28 16 33 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.40 8.51 7.90 -40.82 -0.32 8.19 16 35 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.14 2.00 7.89 -52.49 -0.41 1.58 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -33.59 328.52 -4.47 -38.06 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.48 Total: 7.06 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -3.00 Total: 0.82 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 2.20 Total: -46.72 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.12 Total: -19.30 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.59 -4.47 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108660639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.394 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds