Wall clock time and date at job start Fri Apr 10 2020 14:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 117.00046 * 2 1 4 4 C 1.38826 * 119.99691 * 0.02562 * 3 2 1 5 5 C 1.38200 * 120.17822 * 180.02562 * 4 3 2 6 6 C 1.38081 * 120.17705 * 359.97438 * 5 4 3 7 7 C 1.39305 * 119.99312 * 359.97438 * 6 5 4 8 8 C 1.48470 * 120.08885 * 179.72631 * 7 6 5 9 9 N 1.34046 * 126.67066 * 180.02562 * 8 7 6 10 10 N 1.28985 * 107.26704 * 179.97438 * 9 8 7 11 11 N 1.28730 * 108.94531 * 359.97438 * 10 9 8 12 12 C 1.46500 * 125.34223 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.46994 * 89.97567 * 12 11 10 14 14 O 1.21284 * 120.00062 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99741 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99992 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99857 * 359.97438 * 16 15 13 18 18 C 1.38948 * 120.00159 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99738 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00118 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46566 * 60.00067 * 20 18 16 22 22 H 1.48493 * 109.47127 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47244 * 300.00639 * 20 18 16 24 24 N 1.28878 * 109.31477 * 359.72588 * 11 10 9 25 25 C 1.38519 * 119.99450 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.46537 * 59.99734 * 1 2 3 27 27 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46868 * 300.00270 * 1 2 3 29 29 H 1.07996 * 119.90817 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.91224 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.00477 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.46954 * 209.97111 * 12 11 10 33 33 H 1.08993 * 109.47353 * 329.97343 * 12 11 10 34 34 H 0.97003 * 120.00334 * 359.97438 * 15 13 12 35 35 H 0.97005 * 119.99240 * 180.02562 * 19 18 16 36 36 H 1.07996 * 120.08893 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2899 2.3752 0.0005 5 6 1.9134 3.6085 0.0000 6 6 3.2919 3.6894 -0.0005 7 6 4.0577 2.5257 0.0000 8 6 5.5400 2.6102 -0.0067 9 7 6.4004 1.5823 -0.0075 10 7 7.5906 2.0794 -0.0147 11 7 7.5071 3.3640 -0.0189 12 6 8.6446 4.2872 -0.0279 13 6 9.0279 4.5981 -1.4518 14 8 8.4119 4.0975 -2.3688 15 7 10.0552 5.4325 -1.7062 16 6 10.4037 5.7159 -3.0015 17 1 9.8551 5.2701 -3.8181 18 6 11.4625 6.5766 -3.2638 19 7 12.1296 7.1194 -2.2702 20 14 11.9377 6.9620 -5.0287 21 1 10.7854 7.5877 -5.7261 22 1 13.0894 7.8993 -5.0378 23 1 12.3152 5.7061 -5.7253 24 7 6.2658 3.7104 -0.0203 25 6 3.4294 1.2832 0.0005 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.2115 2.3169 0.0014 30 1 1.3210 4.5115 0.0000 31 1 3.7762 4.6546 -0.0005 32 1 8.3682 5.2092 0.4836 33 1 9.4899 3.8272 0.4838 34 1 10.5477 5.8333 -0.9728 35 1 12.8685 7.7206 -2.4534 36 1 4.0188 0.3784 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108660639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:17 Heat of formation + Delta-G solvation = 60.822509 kcal Electronic energy + Delta-G solvation = -22968.837506 eV Core-core repulsion = 19263.012180 eV Total energy + Delta-G solvation = -3705.825326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.38781 -41.07604 -40.36321 -38.53466 -36.42876 -35.83361 -34.50155 -33.50934 -32.31602 -31.23982 -30.03084 -28.12646 -26.98151 -25.51656 -24.57059 -23.21763 -22.37673 -21.62369 -20.23315 -19.36600 -18.90102 -18.18481 -17.40755 -17.17539 -16.88700 -16.63119 -16.52910 -16.37890 -15.95653 -15.65984 -15.19414 -14.67626 -14.59500 -14.46096 -13.85299 -13.81612 -13.60195 -13.20734 -12.95569 -12.87393 -12.77782 -12.54680 -12.35256 -12.23879 -12.16360 -12.13462 -11.84825 -11.65549 -11.62824 -10.66913 -10.17911 -9.82249 -9.23953 -8.57762 -6.07793 -0.32220 0.14497 0.39659 0.78830 1.32032 1.33797 1.41064 1.50832 1.77732 2.21375 2.24678 2.73124 2.77205 2.85241 3.05214 3.19094 3.81618 3.87904 3.93925 4.04294 4.09256 4.18780 4.27457 4.40115 4.47206 4.49007 4.61516 4.62218 4.79397 4.91268 4.98150 5.22128 5.32446 5.37700 5.46268 5.65124 5.82305 6.39748 6.42203 6.97163 7.18948 7.30478 7.85357 8.57894 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.029918 B = 0.002562 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.669296 B =10924.959876 C =11199.428533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.336 6.336 3 C 0.121 3.879 4 C -0.181 4.181 5 C -0.072 4.072 6 C -0.127 4.127 7 C 0.010 3.990 8 C 0.195 3.805 9 N -0.297 5.297 10 N -0.065 5.065 11 N -0.106 5.106 12 C 0.120 3.880 13 C 0.420 3.580 14 O -0.632 6.632 15 N -0.543 5.543 16 C -0.340 4.340 17 H 0.077 0.923 18 C 0.000 4.000 19 N -0.905 5.905 20 Si 0.992 3.008 21 H -0.272 1.272 22 H -0.266 1.266 23 H -0.274 1.274 24 N -0.295 5.295 25 C -0.131 4.131 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.168 0.832 30 H 0.169 0.831 31 H 0.134 0.866 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.406 0.594 35 H 0.283 0.717 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.981 -5.012 9.612 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.075 3.925 4 C -0.200 4.200 5 C -0.090 4.090 6 C -0.148 4.148 7 C 0.007 3.993 8 C -0.085 4.085 9 N -0.168 5.168 10 N -0.058 5.058 11 N -0.018 5.018 12 C -0.003 4.003 13 C 0.205 3.795 14 O -0.520 6.520 15 N -0.179 5.179 16 C -0.469 4.469 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.544 5.544 20 Si 0.815 3.185 21 H -0.198 1.198 22 H -0.190 1.190 23 H -0.199 1.199 24 N -0.146 5.146 25 C -0.152 4.152 26 H 0.087 0.913 27 H 0.135 0.865 28 H 0.091 0.909 29 H 0.185 0.815 30 H 0.186 0.814 31 H 0.152 0.848 32 H 0.190 0.810 33 H 0.192 0.808 34 H 0.242 0.758 35 H 0.093 0.907 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.376 -5.570 9.031 22.091 hybrid contribution 0.445 0.570 -0.660 0.979 sum -18.931 -5.000 8.371 21.295 Atomic orbital electron populations 1.23423 0.75894 1.05774 1.02741 1.86077 1.23916 1.26373 1.88637 1.18809 0.91179 0.85605 0.96888 1.21757 1.01863 0.91206 1.05222 1.21244 0.92907 0.98839 0.95967 1.21284 0.94887 0.97119 1.01470 1.17070 0.83555 0.94846 1.03826 1.23981 0.97161 0.84467 1.02871 1.75916 0.94702 1.26732 1.19413 1.78812 1.18188 0.93272 1.15527 1.49593 1.05538 1.05086 1.41600 1.22310 0.85757 0.94992 0.97233 1.20294 0.84149 0.84506 0.90504 1.90609 1.56622 1.57045 1.47707 1.41661 1.27766 1.39619 1.08879 1.19578 1.15407 1.27485 0.84423 0.90469 1.26012 0.95222 0.95304 1.03730 1.69627 1.21330 1.30413 1.33032 0.85007 0.78123 0.78369 0.76998 1.19763 1.18990 1.19883 1.74783 0.91037 1.27077 1.21658 1.20296 0.92812 0.97125 1.05013 0.91280 0.86511 0.90941 0.81484 0.81398 0.84821 0.80956 0.80831 0.75831 0.90726 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -6.77 10.49 -92.45 -0.97 -7.74 16 3 C 0.12 2.68 6.68 22.48 0.15 2.83 16 4 C -0.18 -2.93 9.03 22.40 0.20 -2.73 16 5 C -0.07 -1.23 10.03 22.22 0.22 -1.00 16 6 C -0.13 -3.12 9.70 22.49 0.22 -2.90 16 7 C 0.01 0.31 5.87 -20.05 -0.12 0.20 16 8 C 0.19 7.23 7.94 137.38 1.09 8.32 16 9 N -0.30 -11.88 12.23 -52.18 -0.64 -12.51 16 10 N -0.07 -2.64 13.23 37.02 0.49 -2.15 16 11 N -0.11 -4.02 3.48 -190.85 -0.66 -4.68 16 12 C 0.12 3.80 7.08 85.63 0.61 4.41 16 13 C 0.42 19.08 7.85 87.66 0.69 19.76 16 14 O -0.63 -35.64 16.01 -3.04 -0.05 -35.69 16 15 N -0.54 -25.71 5.29 -306.99 -1.62 -27.33 16 16 C -0.34 -18.38 9.68 84.04 0.81 -17.57 16 17 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 18 C 0.00 -0.02 5.50 84.93 0.47 0.44 16 19 N -0.90 -45.37 13.05 21.66 0.28 -45.09 16 20 Si 0.99 41.09 29.55 68.60 2.03 43.12 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 N -0.29 -11.21 11.85 -52.13 -0.62 -11.82 16 25 C -0.13 -3.70 9.64 22.58 0.22 -3.48 16 26 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 27 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 29 H 0.17 1.43 6.28 -2.91 -0.02 1.41 16 30 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.13 3.27 7.88 -2.91 -0.02 3.24 16 32 H 0.17 4.06 8.14 -2.39 -0.02 4.04 16 33 H 0.17 4.12 8.14 -2.39 -0.02 4.10 16 34 H 0.41 17.30 7.90 -92.71 -0.73 16.57 16 35 H 0.28 13.30 8.31 -92.70 -0.77 12.53 16 36 H 0.13 3.85 7.89 -2.91 -0.02 3.82 16 Total: -1.00 -76.04 328.52 4.32 -71.72 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.41 Total: 22.65 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 5.67 Total: 9.54 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -2.77 Total: -103.59 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -1.02 Total: -43.43 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -76.04 4.32 -71.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108660639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.540 kcal (2) G-P(sol) polarization free energy of solvation -76.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds