Wall clock time and date at job start Fri Apr 10 2020 14:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35520 * 117.00425 * 2 1 4 4 C 1.39357 * 120.02705 * 179.97438 * 3 2 1 5 5 C 1.38414 * 118.03563 * 179.74695 * 4 3 2 6 6 C 1.39991 * 117.96648 * 0.53492 * 5 4 3 7 7 C 1.47905 * 120.11901 * 179.73178 * 6 5 4 8 8 O 1.21561 * 119.99523 * 359.73034 * 7 6 5 9 9 N 1.34771 * 120.00185 * 179.72102 * 7 6 5 10 10 C 1.40068 * 120.00112 * 179.97438 * 9 7 6 11 11 C 1.40425 * 125.97670 * 0.02562 * 10 9 7 12 12 C 1.35228 * 107.87081 * 179.71716 * 11 10 9 13 13 N 1.34972 * 107.86453 * 0.41780 * 12 11 10 14 14 C 1.46500 * 125.97758 * 179.83870 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71469 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 N 1.31239 * 125.97915 * 179.97438 * 10 9 7 24 24 N 1.32758 * 119.76646 * 359.45536 * 6 5 4 25 25 N 1.28358 * 122.08304 * 0.28385 * 24 6 5 26 26 H 1.09004 * 109.46898 * 299.99967 * 1 2 3 27 27 H 1.09000 * 109.46618 * 59.99376 * 1 2 3 28 28 H 1.09001 * 109.47535 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.98239 * 0.02694 * 4 3 2 30 30 H 1.07999 * 121.01436 * 180.28719 * 5 4 3 31 31 H 0.97007 * 120.00088 * 0.02562 * 9 7 6 32 32 H 1.08003 * 126.06527 * 359.97438 * 11 10 9 33 33 H 1.08000 * 126.07204 * 180.26071 * 12 11 10 34 34 H 1.09004 * 109.47078 * 4.72231 * 14 13 12 35 35 H 1.08993 * 109.47364 * 244.72002 * 14 13 12 36 36 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 3.4359 1.2809 0.0005 5 6 4.0212 2.5352 -0.0049 6 6 3.1783 3.6530 0.0010 7 6 3.7530 5.0158 0.0016 8 8 4.9592 5.1668 0.0019 9 7 2.9393 6.0902 0.0015 10 6 3.4835 7.3809 0.0026 11 6 4.8512 7.6995 0.0033 12 6 4.9633 9.0471 -0.0021 13 7 3.7175 9.5663 0.0034 14 6 3.3791 10.9917 0.0037 15 6 2.4702 11.2925 -1.1603 16 1 2.1740 10.5010 -1.8326 17 6 2.0170 12.5781 -1.3667 18 7 2.3734 13.5410 -0.5448 19 14 0.8899 12.9509 -2.8090 20 1 1.7067 13.3204 -3.9928 21 1 0.0760 11.7496 -3.1246 22 1 -0.0090 14.0790 -2.4562 23 7 2.8045 8.5040 0.0022 24 7 1.8614 3.4854 0.0004 25 7 1.3224 2.3205 0.0001 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 4.0399 0.3856 0.0005 30 1 5.0953 2.6481 -0.0094 31 1 1.9768 5.9698 0.0015 32 1 5.6685 6.9935 0.0035 33 1 5.8860 9.6084 -0.0070 34 1 4.2912 11.5817 -0.0858 35 1 2.8726 11.2447 0.9350 36 1 2.9585 13.3474 0.2043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120984934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:23 Heat of formation + Delta-G solvation = 76.620214 kcal Electronic energy + Delta-G solvation = -22894.003414 eV Core-core repulsion = 19188.863127 eV Total energy + Delta-G solvation = -3705.140286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.79997 -40.75463 -39.52856 -38.63951 -35.05413 -33.79177 -33.64585 -32.39983 -30.78285 -29.43598 -28.14114 -26.61766 -25.61039 -24.45636 -23.16180 -22.07080 -20.70108 -19.93263 -19.12403 -18.23680 -17.89444 -17.19958 -16.84344 -16.52596 -15.59597 -15.48569 -15.07138 -14.94534 -14.61917 -14.46505 -13.98045 -13.86908 -13.77817 -13.23165 -12.56930 -12.48784 -12.38867 -12.26680 -12.04430 -11.84591 -11.16703 -10.83659 -10.79391 -10.53908 -10.30116 -10.17761 -10.16490 -9.83333 -9.66053 -9.01081 -8.57718 -8.25545 -7.58123 -6.58176 -4.32218 0.07772 0.26146 2.16044 2.30027 2.53106 2.74836 3.16695 3.37401 3.38202 3.42253 3.58495 3.65229 3.67200 3.85192 4.27497 4.37894 4.41370 4.51242 4.74211 4.82459 4.93966 5.14748 5.15680 5.23722 5.40245 5.52195 5.68292 6.09440 6.34223 6.41522 6.44859 6.54662 6.73490 7.24449 7.37843 7.66662 7.80103 7.95674 8.06796 8.34429 8.50111 8.61381 9.35934 10.79614 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.022535 B = 0.002688 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.236925 B =10414.705635 C =11394.825456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.296 6.296 3 C 0.278 3.722 4 C -0.139 4.139 5 C -0.028 4.028 6 C -0.001 4.001 7 C 0.588 3.412 8 O -0.507 6.507 9 N -0.608 5.608 10 C 0.256 3.744 11 C -0.284 4.284 12 C 0.052 3.948 13 N -0.315 5.315 14 C 0.248 3.752 15 C -0.608 4.608 16 H 0.064 0.936 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 1.079 2.921 20 H -0.286 1.286 21 H -0.286 1.286 22 H -0.282 1.282 23 N -0.294 5.294 24 N -0.167 5.167 25 N -0.296 5.296 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.166 0.834 30 H 0.173 0.827 31 H 0.422 0.578 32 H 0.162 0.838 33 H 0.169 0.831 34 H 0.047 0.953 35 H 0.036 0.964 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.912 -26.296 1.948 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.199 6.199 3 C 0.094 3.906 4 C -0.168 4.168 5 C -0.056 4.056 6 C -0.150 4.150 7 C 0.370 3.630 8 O -0.379 6.379 9 N -0.255 5.255 10 C 0.002 3.998 11 C -0.315 4.315 12 C -0.098 4.098 13 N -0.097 5.097 14 C 0.130 3.870 15 C -0.646 4.646 16 H 0.083 0.917 17 C -0.182 4.182 18 N -0.541 5.541 19 Si 0.906 3.094 20 H -0.212 1.212 21 H -0.212 1.212 22 H -0.207 1.207 23 N -0.125 5.125 24 N -0.015 5.015 25 N -0.154 5.154 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.122 0.878 29 H 0.184 0.816 30 H 0.191 0.809 31 H 0.260 0.740 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.657 -23.960 1.211 23.999 hybrid contribution 2.248 -2.224 0.769 3.254 sum 1.591 -26.184 1.980 26.307 Atomic orbital electron populations 1.23107 0.75949 1.03930 1.03372 1.86221 1.23918 1.23102 1.86682 1.21703 0.91109 0.87220 0.90535 1.21551 0.92173 0.99936 1.03144 1.22299 1.03138 0.89832 0.90311 1.22504 0.92104 0.95572 1.04799 1.17232 0.85947 0.82376 0.77418 1.90758 1.13528 1.85029 1.48630 1.42165 1.11148 1.01856 1.70314 1.19036 0.92093 0.84677 1.03948 1.21526 0.95490 0.94694 1.19806 1.22572 0.90478 0.94324 1.02424 1.48846 1.02199 1.06900 1.51711 1.19794 0.97862 0.69949 0.99369 1.22133 1.32492 0.97633 1.12361 0.91740 1.25925 0.98301 0.91816 1.02126 1.70825 1.33620 1.34636 1.14996 0.83387 0.75869 0.75821 0.74316 1.21219 1.21175 1.20708 1.77408 1.15686 0.92135 1.27269 1.73037 1.09974 1.14241 1.04272 1.73218 1.31104 0.93921 1.17186 0.91488 0.91476 0.87788 0.81647 0.80914 0.74041 0.82030 0.81332 0.93525 0.94648 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.39 101.05 1.05 1.23 16 2 O -0.30 -2.37 10.48 -18.25 -0.19 -2.56 16 3 C 0.28 2.60 7.58 -16.77 -0.13 2.47 16 4 C -0.14 -1.01 10.14 -39.10 -0.40 -1.41 16 5 C -0.03 -0.24 9.72 -38.86 -0.38 -0.62 16 6 C 0.00 -0.01 6.83 -82.85 -0.57 -0.57 16 7 C 0.59 8.67 7.77 -12.30 -0.10 8.57 16 8 O -0.51 -8.22 13.51 5.31 0.07 -8.15 16 9 N -0.61 -10.05 5.44 -11.98 -0.07 -10.11 16 10 C 0.26 5.18 8.11 -154.45 -1.25 3.93 16 11 C -0.28 -5.50 9.60 -39.83 -0.38 -5.89 16 12 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 13 N -0.31 -7.34 3.67 -62.56 -0.23 -7.57 16 14 C 0.25 6.26 5.57 -5.19 -0.03 6.24 16 15 C -0.61 -17.12 9.24 -34.44 -0.32 -17.44 16 16 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 17 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 18 N -0.91 -26.36 13.65 55.43 0.76 -25.61 16 19 Si 1.08 25.09 29.90 -169.99 -5.08 20.00 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 N -0.29 -6.89 12.42 31.43 0.39 -6.50 16 24 N -0.17 -2.10 10.73 33.31 0.36 -1.74 16 25 N -0.30 -3.40 10.40 30.55 0.32 -3.08 16 26 H 0.07 0.40 8.11 -51.93 -0.42 -0.03 16 27 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 30 H 0.17 1.16 7.71 -52.49 -0.40 0.76 16 31 H 0.42 6.38 8.17 -40.82 -0.33 6.04 16 32 H 0.16 2.94 5.91 -52.48 -0.31 2.63 16 33 H 0.17 2.66 8.06 -52.49 -0.42 2.24 16 34 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 35 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 36 H 0.27 7.60 7.22 -40.82 -0.29 7.30 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -33.82 326.61 -5.03 -38.85 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -3.49 Total: 3.67 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.79 Total: -2.13 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 1.53 Total: -54.61 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.12 Total: -10.71 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.82 -5.03 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120984934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.469 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds