Wall clock time and date at job start Fri Apr 10 2020 14:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35520 * 117.00425 * 2 1 4 4 C 1.39357 * 120.02705 * 179.97438 * 3 2 1 5 5 C 1.38414 * 118.03563 * 179.74695 * 4 3 2 6 6 C 1.39991 * 117.96648 * 0.53492 * 5 4 3 7 7 C 1.47905 * 120.11901 * 179.73178 * 6 5 4 8 8 O 1.21561 * 119.99523 * 359.73034 * 7 6 5 9 9 N 1.34771 * 120.00185 * 179.72102 * 7 6 5 10 10 C 1.40068 * 120.00112 * 179.97438 * 9 7 6 11 11 C 1.40425 * 125.97670 * 0.02562 * 10 9 7 12 12 C 1.35228 * 107.87081 * 179.71716 * 11 10 9 13 13 N 1.34972 * 107.86453 * 0.41780 * 12 11 10 14 14 C 1.46500 * 125.97758 * 179.83870 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71469 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 N 1.31239 * 125.97915 * 179.97438 * 10 9 7 24 24 N 1.32758 * 119.76646 * 359.45536 * 6 5 4 25 25 N 1.28358 * 122.08304 * 0.28385 * 24 6 5 26 26 H 1.09004 * 109.46898 * 299.99967 * 1 2 3 27 27 H 1.09000 * 109.46618 * 59.99376 * 1 2 3 28 28 H 1.09001 * 109.47535 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.98239 * 0.02694 * 4 3 2 30 30 H 1.07999 * 121.01436 * 180.28719 * 5 4 3 31 31 H 0.97007 * 120.00088 * 0.02562 * 9 7 6 32 32 H 1.08003 * 126.06527 * 359.97438 * 11 10 9 33 33 H 1.08000 * 126.07204 * 180.26071 * 12 11 10 34 34 H 1.09004 * 109.47078 * 4.72231 * 14 13 12 35 35 H 1.08993 * 109.47364 * 244.72002 * 14 13 12 36 36 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 3.4359 1.2809 0.0005 5 6 4.0212 2.5352 -0.0049 6 6 3.1783 3.6530 0.0010 7 6 3.7530 5.0158 0.0016 8 8 4.9592 5.1668 0.0019 9 7 2.9393 6.0902 0.0015 10 6 3.4835 7.3809 0.0026 11 6 4.8512 7.6995 0.0033 12 6 4.9633 9.0471 -0.0021 13 7 3.7175 9.5663 0.0034 14 6 3.3791 10.9917 0.0037 15 6 2.4702 11.2925 -1.1603 16 1 2.1740 10.5010 -1.8326 17 6 2.0170 12.5781 -1.3667 18 7 2.3734 13.5410 -0.5448 19 14 0.8899 12.9509 -2.8090 20 1 1.7067 13.3204 -3.9928 21 1 0.0760 11.7496 -3.1246 22 1 -0.0090 14.0790 -2.4562 23 7 2.8045 8.5040 0.0022 24 7 1.8614 3.4854 0.0004 25 7 1.3224 2.3205 0.0001 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 4.0399 0.3856 0.0005 30 1 5.0953 2.6481 -0.0094 31 1 1.9768 5.9698 0.0015 32 1 5.6685 6.9935 0.0035 33 1 5.8860 9.6084 -0.0070 34 1 4.2912 11.5817 -0.0858 35 1 2.8726 11.2447 0.9350 36 1 2.9585 13.3474 0.2043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120984934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:22 Heat of formation + Delta-G solvation = 51.142350 kcal Electronic energy + Delta-G solvation = -22895.108217 eV Core-core repulsion = 19188.863127 eV Total energy + Delta-G solvation = -3706.245089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.67698 -42.20149 -40.67588 -39.44792 -36.55185 -35.62603 -34.44624 -33.42735 -32.40382 -31.05814 -28.75173 -28.28301 -26.73897 -25.33329 -24.87614 -23.34343 -22.25968 -21.32802 -19.85568 -19.30014 -19.15226 -18.87441 -18.00775 -17.54521 -16.97011 -16.69175 -16.24455 -15.91548 -15.68031 -15.61648 -15.34364 -15.17381 -14.98644 -14.60828 -14.16618 -13.94148 -13.76221 -13.31491 -13.17471 -12.92244 -12.67421 -12.60364 -12.10931 -11.98344 -11.73885 -11.51280 -11.26274 -11.01845 -10.96312 -10.68826 -10.40072 -9.87938 -9.25759 -8.78271 -6.55851 -0.75899 -0.42320 0.86745 1.13981 1.34401 1.50505 1.58281 1.69620 1.78431 2.01390 2.11325 2.44563 2.48034 2.64211 3.01054 3.03203 3.44664 3.67456 3.77749 3.84739 4.12649 4.23136 4.36502 4.39198 4.54544 4.62624 4.69355 4.71888 4.78488 4.80145 4.87491 5.02063 5.54494 5.74994 5.79747 5.91151 6.03482 6.26568 6.41476 6.70601 6.91832 7.19358 7.23263 8.58538 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.022535 B = 0.002688 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.236925 B =10414.705635 C =11394.825456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.294 6.294 3 C 0.274 3.726 4 C -0.118 4.118 5 C -0.022 4.022 6 C -0.014 4.014 7 C 0.593 3.407 8 O -0.520 6.520 9 N -0.611 5.611 10 C 0.264 3.736 11 C -0.286 4.286 12 C 0.058 3.942 13 N -0.341 5.341 14 C 0.259 3.741 15 C -0.622 4.622 16 H 0.044 0.956 17 C -0.018 4.018 18 N -0.923 5.923 19 Si 1.121 2.879 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.275 1.275 23 N -0.344 5.344 24 N -0.190 5.190 25 N -0.317 5.317 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.135 0.865 29 H 0.207 0.793 30 H 0.195 0.805 31 H 0.426 0.574 32 H 0.178 0.822 33 H 0.207 0.793 34 H 0.058 0.942 35 H 0.017 0.983 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 -28.693 1.369 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.197 6.197 3 C 0.090 3.910 4 C -0.147 4.147 5 C -0.050 4.050 6 C -0.163 4.163 7 C 0.378 3.622 8 O -0.393 6.393 9 N -0.259 5.259 10 C 0.009 3.991 11 C -0.317 4.317 12 C -0.090 4.090 13 N -0.123 5.123 14 C 0.139 3.861 15 C -0.660 4.660 16 H 0.062 0.938 17 C -0.218 4.218 18 N -0.559 5.559 19 Si 0.942 3.058 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.200 1.200 23 N -0.175 5.175 24 N -0.038 5.038 25 N -0.176 5.176 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.153 0.847 29 H 0.224 0.776 30 H 0.213 0.787 31 H 0.264 0.736 32 H 0.195 0.805 33 H 0.224 0.776 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.277 -26.404 0.644 26.413 hybrid contribution 1.972 -1.730 0.997 2.807 sum 2.250 -28.134 1.641 28.271 Atomic orbital electron populations 1.23330 0.74829 1.05831 1.02902 1.86245 1.25038 1.22197 1.86239 1.22026 0.92146 0.87093 0.89763 1.21970 0.91466 1.00733 1.00530 1.22539 1.03817 0.89156 0.89467 1.22215 0.92626 0.94636 1.06853 1.17634 0.85661 0.82892 0.76016 1.90724 1.14080 1.85474 1.49055 1.42338 1.11715 1.01003 1.70883 1.19384 0.92600 0.85365 1.01722 1.21775 0.95423 0.94875 1.19613 1.23252 0.90504 0.94801 1.00410 1.48623 1.03412 1.06170 1.54109 1.19455 0.97539 0.71689 0.97390 1.22307 1.33341 0.97301 1.13019 0.93795 1.27248 0.99010 0.91733 1.03823 1.70916 1.34432 1.35056 1.15517 0.82854 0.74691 0.75951 0.72277 1.19236 1.20734 1.20020 1.77317 1.17113 0.93153 1.29935 1.72962 1.10481 1.15179 1.05203 1.73130 1.31820 0.94280 1.18375 0.91941 0.91992 0.84737 0.77614 0.78750 0.73560 0.80503 0.77643 0.92442 0.96498 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.39 113.37 1.18 1.42 16 2 O -0.29 -4.00 10.48 -88.24 -0.92 -4.92 16 3 C 0.27 4.54 7.58 84.84 0.64 5.18 16 4 C -0.12 -1.33 10.14 22.58 0.23 -1.10 16 5 C -0.02 -0.33 9.72 22.74 0.22 -0.11 16 6 C -0.01 -0.31 6.83 41.99 0.29 -0.03 16 7 C 0.59 17.12 7.77 86.81 0.67 17.79 16 8 O -0.52 -16.17 13.51 -3.91 -0.05 -16.22 16 9 N -0.61 -20.37 5.44 -310.08 -1.69 -22.06 16 10 C 0.26 10.77 8.11 133.35 1.08 11.86 16 11 C -0.29 -10.86 9.60 22.11 0.21 -10.65 16 12 C 0.06 2.25 11.43 83.52 0.95 3.21 16 13 N -0.34 -16.13 3.67 -351.84 -1.29 -17.42 16 14 C 0.26 13.35 5.57 85.64 0.48 13.82 16 15 C -0.62 -35.74 9.24 25.60 0.24 -35.50 16 16 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 17 C -0.02 -1.04 5.46 84.65 0.46 -0.57 16 18 N -0.92 -54.16 13.65 21.45 0.29 -53.87 16 19 Si 1.12 50.41 29.90 68.60 2.05 52.46 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 23 N -0.34 -16.55 12.42 -54.49 -0.68 -17.22 16 24 N -0.19 -4.73 10.73 -48.52 -0.52 -5.25 16 25 N -0.32 -7.05 10.40 -170.01 -1.77 -8.82 16 26 H 0.06 0.67 8.11 -2.39 -0.02 0.65 16 27 H 0.06 0.68 8.11 -2.39 -0.02 0.66 16 28 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.21 0.61 8.06 -2.91 -0.02 0.59 16 30 H 0.20 1.96 7.71 -2.91 -0.02 1.94 16 31 H 0.43 13.28 8.17 -92.70 -0.76 12.53 16 32 H 0.18 6.14 5.91 -2.91 -0.02 6.13 16 33 H 0.21 6.05 8.06 -2.91 -0.02 6.03 16 34 H 0.06 2.81 7.94 -2.39 -0.02 2.79 16 35 H 0.02 0.93 8.00 -2.39 -0.02 0.91 16 36 H 0.26 15.14 7.22 -92.71 -0.67 14.47 16 Total: -1.00 -74.21 326.61 2.57 -71.64 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.49 Total: 16.36 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 6.66 Total: 5.32 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -5.65 Total: -124.64 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.98 Total: -21.14 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 2.05 Total: 52.46 kcal Total: -74.21 2.57 -71.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120984934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.784 kcal (2) G-P(sol) polarization free energy of solvation -74.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds