Wall clock time and date at job start Fri Apr 10 2020 14:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39356 * 120.09616 * 276.61491 * 3 2 1 5 5 C 1.39314 * 119.71825 * 179.97438 * 4 3 2 6 6 C 1.47747 * 120.03281 * 179.97438 * 5 4 3 7 7 O 1.21570 * 120.00109 * 328.11910 * 6 5 4 8 8 N 1.34781 * 120.00287 * 148.12415 * 6 5 4 9 9 C 1.46963 * 120.58826 * 0.34400 * 8 6 5 10 10 C 1.53370 * 108.63404 * 235.20385 * 9 8 6 11 11 N 1.46965 * 108.63699 * 310.57698 * 10 9 8 12 12 C 1.36928 * 120.59877 * 235.20476 * 11 10 9 13 13 H 1.08005 * 120.00356 * 152.13713 * 12 11 10 14 14 C 1.38818 * 119.99647 * 331.86060 * 12 11 10 15 15 N 1.31611 * 119.99936 * 344.02415 * 14 12 11 16 16 Si 1.86801 * 119.99858 * 164.02395 * 14 12 11 17 17 H 1.48503 * 109.46993 * 60.00010 * 16 14 12 18 18 H 1.48492 * 109.47109 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47240 * 300.00173 * 16 14 12 20 20 C 1.46973 * 118.80997 * 55.47909 * 11 10 9 21 21 C 1.46958 * 120.59525 * 180.32143 * 8 6 5 22 22 C 1.39810 * 119.92826 * 0.24824 * 5 4 3 23 23 C 1.37876 * 120.19672 * 359.47182 * 22 5 4 24 24 C 1.38464 * 120.27920 * 0.55661 * 23 22 5 25 25 F 1.35105 * 119.96468 * 179.72224 * 24 23 22 26 26 H 1.07998 * 120.14225 * 359.95602 * 4 3 2 27 27 H 1.09004 * 109.60634 * 115.46426 * 9 8 6 28 28 H 1.08992 * 109.75517 * 355.03604 * 9 8 6 29 29 H 1.09005 * 109.61055 * 190.83511 * 10 9 8 30 30 H 1.08995 * 109.60875 * 70.32087 * 10 9 8 31 31 H 0.97005 * 119.99778 * 179.97438 * 15 14 12 32 32 H 1.08995 * 109.60956 * 64.26075 * 20 11 10 33 33 H 1.08999 * 109.61015 * 184.78146 * 20 11 10 34 34 H 1.09003 * 109.61151 * 244.53613 * 21 8 6 35 35 H 1.09004 * 109.61255 * 4.88050 * 21 8 6 36 36 H 1.07996 * 119.89799 * 179.72663 * 22 5 4 37 37 H 1.07994 * 119.85821 * 180.25144 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2669 -0.1379 1.1977 5 6 4.6601 -0.1368 1.1885 6 6 5.4080 -0.2827 2.4542 7 8 4.9447 0.1578 3.4883 8 7 6.6040 -0.9040 2.4626 9 6 7.1798 -1.4347 1.2189 10 6 7.4906 -2.9232 1.4188 11 7 8.2426 -3.0818 2.6716 12 6 9.4576 -3.7130 2.6800 13 1 10.1937 -3.4578 3.4281 14 6 9.7412 -4.6853 1.7306 15 7 8.7664 -5.2261 1.0311 16 14 11.5065 -5.2258 1.4459 17 1 12.0634 -5.7812 2.7055 18 1 11.5407 -6.2678 0.3884 19 1 12.3187 -4.0586 1.0179 20 6 7.6641 -2.5561 3.9162 21 6 7.3558 -1.0625 3.7153 22 6 5.3495 0.0083 -0.0191 23 6 4.6549 0.1394 -1.2029 24 6 3.2702 0.1400 -1.2034 25 9 2.5959 0.2745 -2.3664 26 1 2.7309 -0.2455 2.1290 27 1 8.0985 -0.8976 0.9828 28 1 6.4669 -1.3162 0.4030 29 1 8.0897 -3.2871 0.5841 30 1 6.5595 -3.4867 1.4772 31 1 8.9646 -5.9052 0.3674 32 1 6.7450 -3.0940 4.1482 33 1 8.3778 -2.6775 4.7311 34 1 8.2871 -0.4990 3.6569 35 1 6.7580 -0.6958 4.5497 36 1 6.4294 0.0136 -0.0252 37 1 5.1930 0.2471 -2.1330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279458974.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:34 Heat of formation + Delta-G solvation = 33.370669 kcal Electronic energy + Delta-G solvation = -24067.382317 eV Core-core repulsion = 20340.446628 eV Total energy + Delta-G solvation = -3726.935689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.41989 -40.63155 -38.67437 -36.94412 -36.68110 -34.14356 -32.37451 -31.60575 -30.87341 -30.09682 -27.17475 -24.86995 -24.44123 -23.30374 -22.67576 -21.18700 -19.78619 -18.64216 -18.02791 -17.30642 -16.76413 -16.18957 -15.92274 -15.61462 -15.07505 -14.83417 -14.53242 -14.41583 -13.98675 -13.86978 -13.79311 -13.56893 -13.44614 -13.23605 -13.08624 -12.68517 -12.58339 -12.28462 -11.85143 -11.53763 -11.19431 -10.91202 -10.84794 -10.60924 -10.34537 -10.16655 -9.96456 -9.73406 -9.42820 -9.07648 -8.69319 -8.41739 -6.81606 -5.94128 -3.39565 0.14287 0.57599 2.29355 2.32846 2.93659 3.13507 3.29171 3.35902 3.36303 3.46787 3.50044 3.64151 4.26328 4.35381 4.40226 4.59448 4.78975 5.11741 5.17144 5.24474 5.43340 5.48961 5.55699 5.61723 5.71752 5.76889 5.84166 5.92987 6.06188 6.18959 6.23065 6.30711 6.67162 6.78469 7.06857 7.15408 7.35538 7.61913 7.69103 8.26564 8.28086 9.03144 9.65021 10.21340 11.13303 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.003770 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.618091 B = 7425.396691 C = 8229.857101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C 0.256 3.744 3 C -0.070 4.070 4 C 0.012 3.988 5 C -0.132 4.132 6 C 0.553 3.447 7 O -0.548 6.548 8 N -0.584 5.584 9 C 0.048 3.952 10 C 0.156 3.844 11 N -0.591 5.591 12 C -0.258 4.258 13 H 0.068 0.932 14 C 0.004 3.996 15 N -0.903 5.903 16 Si 0.906 3.094 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.131 3.869 21 C 0.095 3.905 22 C -0.040 4.040 23 C -0.158 4.158 24 C 0.165 3.835 25 F -0.124 7.124 26 H 0.153 0.847 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.025 0.975 31 H 0.257 0.743 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.168 0.832 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.053 10.807 -4.554 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.078 5.078 2 C -0.059 4.059 3 C -0.075 4.075 4 C -0.010 4.010 5 C -0.135 4.135 6 C 0.340 3.660 7 O -0.428 6.428 8 N -0.315 5.315 9 C -0.075 4.075 10 C 0.029 3.971 11 N -0.314 5.314 12 C -0.387 4.387 13 H 0.086 0.914 14 C -0.194 4.194 15 N -0.547 5.547 16 Si 0.735 3.265 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.209 1.209 20 C 0.003 3.997 21 C -0.028 4.028 22 C -0.059 4.059 23 C -0.177 4.177 24 C 0.142 3.858 25 F -0.103 7.103 26 H 0.171 0.829 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.185 0.815 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.026 10.865 -4.162 13.592 hybrid contribution 1.235 -0.496 -0.509 1.424 sum -5.791 10.369 -4.671 12.762 Atomic orbital electron populations 1.81246 1.11661 1.08471 1.06396 1.25206 0.92158 0.94099 0.94482 1.15799 0.85191 1.12831 0.93656 1.21113 0.92616 0.90591 0.96656 1.19939 0.93563 1.05523 0.94468 1.18022 0.81265 0.78921 0.87744 1.90767 1.68482 1.50279 1.33293 1.47959 1.18390 1.54475 1.10667 1.23588 0.98101 1.00300 0.85529 1.21241 0.96004 0.88089 0.91756 1.44017 1.20180 1.66240 1.00953 1.19183 0.90066 1.14380 1.15073 0.91409 1.25080 0.97609 0.95997 1.00754 1.69972 1.30017 1.27968 1.26757 0.86323 0.84407 0.78005 0.77742 1.20828 1.21562 1.20900 1.21404 0.97138 0.90374 0.90741 1.22367 0.95207 0.99823 0.85419 1.22047 1.02143 0.91303 0.90375 1.21092 0.91173 1.04783 1.00647 1.17837 0.90139 0.97712 0.80069 1.91568 1.80377 1.92338 1.45976 0.82932 0.91021 0.88761 0.87750 0.95724 0.93339 0.95698 0.91333 0.91501 0.89729 0.81515 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.67 18.54 41.84 0.78 -4.90 16 2 C 0.26 3.11 14.96 -22.47 -0.34 2.78 16 3 C -0.07 -0.74 5.73 -106.88 -0.61 -1.35 16 4 C 0.01 0.13 9.30 -38.77 -0.36 -0.23 16 5 C -0.13 -1.55 5.52 -105.02 -0.58 -2.13 16 6 C 0.55 8.40 7.45 -12.37 -0.09 8.31 16 7 O -0.55 -9.81 16.15 5.30 0.09 -9.73 16 8 N -0.58 -9.17 2.95 -173.36 -0.51 -9.68 16 9 C 0.05 0.72 5.05 -3.60 -0.02 0.70 16 10 C 0.16 3.19 5.50 -3.60 -0.02 3.17 16 11 N -0.59 -13.32 2.96 -171.76 -0.51 -13.83 16 12 C -0.26 -6.45 9.59 -15.06 -0.14 -6.59 16 13 H 0.07 1.67 7.88 -52.48 -0.41 1.25 16 14 C 0.00 0.11 4.95 -17.43 -0.09 0.03 16 15 N -0.90 -24.06 11.09 55.49 0.62 -23.44 16 16 Si 0.91 20.09 29.58 -169.99 -5.03 15.06 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.13 2.51 6.70 -3.36 -0.02 2.49 16 21 C 0.10 1.56 6.61 -3.37 -0.02 1.54 16 22 C -0.04 -0.37 7.42 -39.13 -0.29 -0.66 16 23 C -0.16 -1.25 9.99 -39.63 -0.40 -1.64 16 24 C 0.16 1.57 7.28 -38.83 -0.28 1.28 16 25 F -0.12 -1.28 16.80 2.25 0.04 -1.24 16 26 H 0.15 1.64 7.95 -52.49 -0.42 1.22 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.10 1.13 3.54 -53.70 -0.19 0.94 16 29 H 0.10 2.38 5.93 -51.93 -0.31 2.07 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.26 6.66 8.31 -40.82 -0.34 6.33 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.35 6.99 -51.93 -0.36 0.99 16 36 H 0.17 1.35 5.32 -52.49 -0.28 1.07 16 37 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 319.93 15.07 4.82 4.82 Total: -1.00 -29.85 319.93 -6.61 -36.46 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -3.63 Total: -1.21 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -3.26 Total: 7.69 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.37 Total: -51.85 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.85 -6.61 -36.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279458974.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.830 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds