Wall clock time and date at job start Fri Apr 10 2020 14:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39356 * 120.09616 * 276.61491 * 3 2 1 5 5 C 1.39314 * 119.71825 * 179.97438 * 4 3 2 6 6 C 1.47747 * 120.03281 * 179.97438 * 5 4 3 7 7 O 1.21570 * 120.00109 * 328.11910 * 6 5 4 8 8 N 1.34781 * 120.00287 * 148.12415 * 6 5 4 9 9 C 1.46963 * 120.58826 * 0.34400 * 8 6 5 10 10 C 1.53370 * 108.63404 * 235.20385 * 9 8 6 11 11 N 1.46965 * 108.63699 * 310.57698 * 10 9 8 12 12 C 1.36928 * 120.59877 * 235.20476 * 11 10 9 13 13 H 1.08005 * 120.00356 * 152.13713 * 12 11 10 14 14 C 1.38818 * 119.99647 * 331.86060 * 12 11 10 15 15 N 1.31611 * 119.99936 * 344.02415 * 14 12 11 16 16 Si 1.86801 * 119.99858 * 164.02395 * 14 12 11 17 17 H 1.48503 * 109.46993 * 60.00010 * 16 14 12 18 18 H 1.48492 * 109.47109 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47240 * 300.00173 * 16 14 12 20 20 C 1.46973 * 118.80997 * 55.47909 * 11 10 9 21 21 C 1.46958 * 120.59525 * 180.32143 * 8 6 5 22 22 C 1.39810 * 119.92826 * 0.24824 * 5 4 3 23 23 C 1.37876 * 120.19672 * 359.47182 * 22 5 4 24 24 C 1.38464 * 120.27920 * 0.55661 * 23 22 5 25 25 F 1.35105 * 119.96468 * 179.72224 * 24 23 22 26 26 H 1.07998 * 120.14225 * 359.95602 * 4 3 2 27 27 H 1.09004 * 109.60634 * 115.46426 * 9 8 6 28 28 H 1.08992 * 109.75517 * 355.03604 * 9 8 6 29 29 H 1.09005 * 109.61055 * 190.83511 * 10 9 8 30 30 H 1.08995 * 109.60875 * 70.32087 * 10 9 8 31 31 H 0.97005 * 119.99778 * 179.97438 * 15 14 12 32 32 H 1.08995 * 109.60956 * 64.26075 * 20 11 10 33 33 H 1.08999 * 109.61015 * 184.78146 * 20 11 10 34 34 H 1.09003 * 109.61151 * 244.53613 * 21 8 6 35 35 H 1.09004 * 109.61255 * 4.88050 * 21 8 6 36 36 H 1.07996 * 119.89799 * 179.72663 * 22 5 4 37 37 H 1.07994 * 119.85821 * 180.25144 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2669 -0.1379 1.1977 5 6 4.6601 -0.1368 1.1885 6 6 5.4080 -0.2827 2.4542 7 8 4.9447 0.1578 3.4883 8 7 6.6040 -0.9040 2.4626 9 6 7.1798 -1.4347 1.2189 10 6 7.4906 -2.9232 1.4188 11 7 8.2426 -3.0818 2.6716 12 6 9.4576 -3.7130 2.6800 13 1 10.1937 -3.4578 3.4281 14 6 9.7412 -4.6853 1.7306 15 7 8.7664 -5.2261 1.0311 16 14 11.5065 -5.2258 1.4459 17 1 12.0634 -5.7812 2.7055 18 1 11.5407 -6.2678 0.3884 19 1 12.3187 -4.0586 1.0179 20 6 7.6641 -2.5561 3.9162 21 6 7.3558 -1.0625 3.7153 22 6 5.3495 0.0083 -0.0191 23 6 4.6549 0.1394 -1.2029 24 6 3.2702 0.1400 -1.2034 25 9 2.5959 0.2745 -2.3664 26 1 2.7309 -0.2455 2.1290 27 1 8.0985 -0.8976 0.9828 28 1 6.4669 -1.3162 0.4030 29 1 8.0897 -3.2871 0.5841 30 1 6.5595 -3.4867 1.4772 31 1 8.9646 -5.9052 0.3674 32 1 6.7450 -3.0940 4.1482 33 1 8.3778 -2.6775 4.7311 34 1 8.2871 -0.4990 3.6569 35 1 6.7580 -0.6958 4.5497 36 1 6.4294 0.0136 -0.0252 37 1 5.1930 0.2471 -2.1330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279458974.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:33 Heat of formation + Delta-G solvation = 16.519765 kcal Electronic energy + Delta-G solvation = -24068.113027 eV Core-core repulsion = 20340.446628 eV Total energy + Delta-G solvation = -3727.666399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.21548 -41.71028 -39.71906 -38.39394 -37.68620 -35.68999 -33.65843 -32.67136 -32.18657 -31.40733 -28.72986 -26.04011 -25.65032 -24.56694 -23.96914 -22.41650 -21.03228 -19.90083 -18.89331 -18.52502 -18.02457 -17.15050 -17.02272 -16.87394 -16.57425 -16.21739 -15.52854 -15.42165 -15.31792 -15.16772 -14.96932 -14.88461 -14.71549 -14.39814 -14.13798 -13.94134 -13.65121 -13.35407 -13.23977 -12.90636 -12.62242 -12.47300 -12.37601 -12.18860 -11.96556 -11.70738 -11.62957 -10.96565 -10.54645 -10.25031 -10.00073 -9.78435 -8.60548 -7.83697 -5.32153 -0.69560 -0.23705 1.33582 1.39139 1.54156 1.55552 1.62057 1.82342 2.03822 2.52334 2.56071 2.58577 2.83173 3.31100 3.33376 3.53253 3.65939 3.81560 4.00459 4.22889 4.28466 4.34205 4.43487 4.63090 4.64888 4.68310 4.75354 4.77206 4.84640 4.89260 5.00099 5.12381 5.28065 5.45366 5.58125 5.66282 5.71605 6.20177 6.40457 6.44276 7.06804 7.16705 7.83998 8.36451 9.20470 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.003770 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.618091 B = 7425.396691 C = 8229.857101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.273 3.727 3 C -0.074 4.074 4 C 0.014 3.986 5 C -0.147 4.147 6 C 0.555 3.445 7 O -0.579 6.579 8 N -0.590 5.590 9 C 0.064 3.936 10 C 0.158 3.842 11 N -0.609 5.609 12 C -0.265 4.265 13 H 0.069 0.931 14 C -0.043 4.043 15 N -0.932 5.932 16 Si 0.966 3.034 17 H -0.283 1.283 18 H -0.296 1.296 19 H -0.273 1.273 20 C 0.130 3.870 21 C 0.106 3.894 22 C -0.031 4.031 23 C -0.136 4.136 24 C 0.170 3.830 25 F -0.126 7.126 26 H 0.148 0.852 27 H 0.088 0.912 28 H 0.130 0.870 29 H 0.081 0.919 30 H -0.004 1.004 31 H 0.252 0.748 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.186 0.814 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 12.244 -5.983 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.042 4.042 3 C -0.078 4.078 4 C -0.008 4.008 5 C -0.150 4.150 6 C 0.345 3.655 7 O -0.461 6.461 8 N -0.320 5.320 9 C -0.058 4.058 10 C 0.032 3.968 11 N -0.333 5.333 12 C -0.395 4.395 13 H 0.086 0.914 14 C -0.239 4.239 15 N -0.578 5.578 16 Si 0.794 3.206 17 H -0.209 1.209 18 H -0.223 1.223 19 H -0.199 1.199 20 C 0.003 3.997 21 C -0.018 4.018 22 C -0.050 4.050 23 C -0.154 4.154 24 C 0.148 3.852 25 F -0.104 7.104 26 H 0.166 0.834 27 H 0.106 0.894 28 H 0.147 0.853 29 H 0.099 0.901 30 H 0.014 0.986 31 H 0.061 0.939 32 H 0.025 0.975 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.202 0.798 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.988 12.329 -5.588 14.802 hybrid contribution 0.863 -0.948 -0.028 1.282 sum -5.124 11.382 -5.617 13.688 Atomic orbital electron populations 1.81258 1.12815 1.10009 1.07625 1.25442 0.92420 0.92973 0.93354 1.15738 0.84184 1.13805 0.94097 1.21011 0.92472 0.90563 0.96743 1.19712 0.93529 1.07839 0.93913 1.18443 0.80680 0.77857 0.88549 1.90750 1.68945 1.51510 1.34896 1.48000 1.18777 1.54736 1.10519 1.23486 0.99934 0.96169 0.86244 1.21119 0.93893 0.91509 0.90253 1.44301 1.19966 1.66368 1.02617 1.19489 0.91074 1.14168 1.14740 0.91356 1.25730 1.00708 0.96415 1.01003 1.70124 1.31547 1.28656 1.27434 0.85372 0.80603 0.77496 0.77080 1.20914 1.22269 1.19911 1.21466 0.96230 0.92104 0.89855 1.22150 0.95980 0.97386 0.86247 1.22179 1.02887 0.90275 0.89619 1.21402 0.90219 1.02271 1.01507 1.17979 0.90784 0.96992 0.79426 1.91576 1.80606 1.92254 1.46013 0.83398 0.89379 0.85292 0.90069 0.98566 0.93920 0.97458 0.90961 0.90268 0.89402 0.79771 0.78993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.33 18.54 19.01 0.35 -11.98 16 2 C 0.27 6.42 14.96 88.33 1.32 7.74 16 3 C -0.07 -1.41 5.73 -21.33 -0.12 -1.53 16 4 C 0.01 0.28 9.30 22.80 0.21 0.49 16 5 C -0.15 -3.12 5.52 -20.12 -0.11 -3.23 16 6 C 0.56 16.03 7.45 86.76 0.65 16.68 16 7 O -0.58 -20.33 16.15 -3.94 -0.06 -20.39 16 8 N -0.59 -17.54 2.95 -820.66 -2.42 -19.96 16 9 C 0.06 1.78 5.05 86.42 0.44 2.21 16 10 C 0.16 6.46 5.50 86.41 0.48 6.93 16 11 N -0.61 -27.44 2.96 -697.31 -2.07 -29.51 16 12 C -0.26 -13.21 9.59 84.04 0.81 -12.41 16 13 H 0.07 3.33 7.88 -2.91 -0.02 3.31 16 14 C -0.04 -2.17 4.95 84.86 0.42 -1.75 16 15 N -0.93 -50.29 11.09 21.65 0.24 -50.05 16 16 Si 0.97 41.16 29.58 68.60 2.03 43.19 16 17 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.30 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 20 C 0.13 4.99 6.70 86.57 0.58 5.57 16 21 C 0.11 3.36 6.61 86.57 0.57 3.93 16 22 C -0.03 -0.45 7.42 22.56 0.17 -0.28 16 23 C -0.14 -1.52 9.99 22.24 0.22 -1.30 16 24 C 0.17 2.70 7.28 22.76 0.17 2.87 16 25 F -0.13 -2.22 16.80 44.97 0.76 -1.47 16 26 H 0.15 3.13 7.95 -2.91 -0.02 3.11 16 27 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 28 H 0.13 2.65 3.54 -4.05 -0.01 2.64 16 29 H 0.08 3.71 5.93 -2.38 -0.01 3.69 16 30 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.25 13.26 8.31 -92.70 -0.77 12.49 16 32 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 34 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.09 2.74 6.99 -2.38 -0.02 2.72 16 36 H 0.19 2.08 5.32 -2.91 -0.02 2.07 16 37 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -65.72 319.93 5.74 -59.97 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 1.12 Total: 4.27 kcal Atomic # 6 Polarization: 20.12 SS G_CDS: 5.79 Total: 25.91 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -3.89 Total: -111.49 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.06 Total: -20.39 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.76 Total: -1.47 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -65.72 5.74 -59.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279458974.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.493 kcal (2) G-P(sol) polarization free energy of solvation -65.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds