Wall clock time and date at job start Fri Apr 10 2020 14:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40033 * 126.25678 * 2 1 4 4 N 1.23652 * 109.31823 * 180.02562 * 3 2 1 5 5 N 1.40027 * 109.31522 * 0.02562 * 4 3 2 6 6 C 1.46503 * 126.25608 * 180.02562 * 5 4 3 7 7 C 1.50691 * 109.46948 * 269.96913 * 6 5 4 8 8 O 1.21279 * 120.00621 * 355.00277 * 7 6 5 9 9 N 1.34787 * 119.99964 * 175.00121 * 7 6 5 10 10 C 1.37138 * 119.99516 * 6.00572 * 9 7 6 11 11 H 1.08006 * 120.00279 * 53.62441 * 10 9 7 12 12 C 1.38890 * 119.99881 * 233.62382 * 10 9 7 13 13 N 1.31420 * 119.99936 * 5.46486 * 12 10 9 14 14 Si 1.86800 * 120.00009 * 185.47035 * 12 10 9 15 15 H 1.48508 * 109.46927 * 59.99952 * 14 12 10 16 16 H 1.48504 * 109.47124 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47217 * 299.99892 * 14 12 10 18 18 C 1.39785 * 120.00120 * 186.00665 * 9 7 6 19 19 C 1.38964 * 120.07821 * 8.28339 * 18 9 7 20 20 C 1.38078 * 119.92088 * 179.79319 * 19 18 9 21 21 C 1.38316 * 120.07855 * 0.46362 * 20 19 18 22 22 C 1.38307 * 120.15608 * 359.78665 * 21 20 19 23 23 C 1.38091 * 120.07386 * 359.97438 * 22 21 20 24 24 C 1.35053 * 126.26372 * 180.02562 * 2 1 3 25 25 O 1.21815 * 126.79646 * 359.97438 * 24 2 1 26 26 H 1.08995 * 109.47326 * 269.97092 * 1 2 3 27 27 H 1.08997 * 109.47218 * 29.98252 * 1 2 3 28 28 H 1.09003 * 109.46479 * 149.97548 * 1 2 3 29 29 H 1.08996 * 109.47220 * 29.97915 * 6 5 4 30 30 H 1.09009 * 109.46817 * 149.96999 * 6 5 4 31 31 H 0.97008 * 119.99839 * 184.99600 * 13 12 10 32 32 H 1.07995 * 120.03656 * 359.97438 * 19 18 9 33 33 H 1.07997 * 119.96600 * 180.25299 * 20 19 18 34 34 H 1.07997 * 119.92365 * 179.77242 * 21 20 19 35 35 H 1.07997 * 119.96414 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.03407 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2932 1.1292 0.0000 4 7 3.4760 0.7689 -0.0005 5 7 3.5341 -0.6301 -0.0015 6 6 4.7504 -1.4468 -0.0018 7 6 5.1673 -1.7264 -1.4227 8 8 4.4651 -1.3649 -2.3431 9 7 6.3206 -2.3783 -1.6708 10 6 7.0530 -2.8951 -0.6328 11 1 6.5858 -3.5581 0.0803 12 6 8.3956 -2.5658 -0.4988 13 7 8.9375 -1.6769 -1.3009 14 14 9.4313 -3.3866 0.8215 15 1 9.4423 -4.8551 0.6003 16 1 10.8205 -2.8662 0.7557 17 1 8.8544 -3.0916 2.1577 18 6 6.7702 -2.5275 -2.9859 19 6 6.1265 -1.8615 -4.0218 20 6 6.5760 -2.0079 -5.3191 21 6 7.6596 -2.8238 -5.5894 22 6 8.2995 -3.4923 -4.5615 23 6 7.8584 -3.3467 -3.2611 24 6 2.2638 -1.0889 -0.0005 25 8 1.9089 -2.2542 -0.0006 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3632 -0.8898 -0.5142 29 1 5.5481 -0.9107 0.5122 30 1 4.5559 -2.3884 0.5118 31 1 9.8902 -1.4998 -1.2557 32 1 5.2775 -1.2279 -3.8120 33 1 6.0788 -1.4874 -6.1243 34 1 8.0068 -2.9394 -6.6055 35 1 9.1451 -4.1290 -4.7761 36 1 8.3583 -3.8693 -2.4590 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603351336.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:26 Heat of formation + Delta-G solvation = 83.176003 kcal Electronic energy + Delta-G solvation = -24752.481653 eV Core-core repulsion = 21047.625647 eV Total energy + Delta-G solvation = -3704.856006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.94370 -41.53446 -39.27805 -39.01613 -36.90926 -36.29491 -34.39137 -33.80426 -31.46069 -31.20062 -29.45547 -28.28993 -27.06630 -24.70374 -23.63462 -23.30191 -22.85230 -21.39698 -19.83434 -18.83936 -18.45116 -17.78526 -17.52003 -17.33835 -17.26010 -16.91342 -16.14564 -16.07849 -15.28899 -14.91150 -14.75167 -14.72088 -14.51230 -14.33559 -14.09408 -14.02212 -13.95261 -13.50176 -13.36810 -13.14859 -13.02603 -12.75376 -12.49841 -12.13690 -11.83622 -11.74820 -11.58290 -11.08904 -10.64273 -10.53049 -10.06613 -9.56017 -8.75420 -8.16864 -6.46479 -0.02498 0.12919 0.62760 0.78712 1.15652 1.46579 1.50999 1.59760 1.77848 1.86246 2.26126 2.69643 2.93360 2.95546 3.34865 3.80447 3.86045 4.20658 4.29314 4.33983 4.37396 4.43604 4.46089 4.56694 4.67239 4.71473 4.88155 4.88580 4.96459 5.09659 5.34293 5.39486 5.75343 5.82380 5.85436 5.98188 6.23213 6.45860 6.55610 6.63903 6.95744 7.27402 7.69141 8.64667 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.014780 B = 0.005355 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.934806 B = 5227.502437 C = 6529.202365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.466 5.466 3 N 0.025 4.975 4 N 0.019 4.981 5 N -0.453 5.453 6 C 0.162 3.838 7 C 0.462 3.538 8 O -0.586 6.586 9 N -0.387 5.387 10 C -0.395 4.395 11 H 0.108 0.892 12 C 0.030 3.970 13 N -0.870 5.870 14 Si 0.982 3.018 15 H -0.265 1.265 16 H -0.285 1.285 17 H -0.254 1.254 18 C 0.164 3.836 19 C -0.208 4.208 20 C -0.119 4.119 21 C -0.163 4.163 22 C -0.119 4.119 23 C -0.121 4.121 24 C 0.640 3.360 25 O -0.561 6.561 26 H 0.102 0.898 27 H 0.121 0.879 28 H 0.094 0.906 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.276 0.724 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.177 1.726 3.101 8.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.298 5.298 3 N 0.028 4.972 4 N 0.021 4.979 5 N -0.282 5.282 6 C 0.038 3.962 7 C 0.253 3.747 8 O -0.472 6.472 9 N -0.095 5.095 10 C -0.521 4.521 11 H 0.126 0.874 12 C -0.179 4.179 13 N -0.502 5.502 14 Si 0.804 3.196 15 H -0.190 1.190 16 H -0.210 1.210 17 H -0.178 1.178 18 C 0.067 3.933 19 C -0.228 4.228 20 C -0.138 4.138 21 C -0.182 4.182 22 C -0.138 4.138 23 C -0.142 4.142 24 C 0.337 3.663 25 O -0.433 6.433 26 H 0.120 0.880 27 H 0.140 0.860 28 H 0.113 0.887 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.086 0.914 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.337 2.323 2.751 8.173 hybrid contribution 0.642 -0.947 0.365 1.201 sum -6.695 1.376 3.115 7.511 Atomic orbital electron populations 1.22310 0.68196 1.06458 1.05889 1.50355 1.09595 1.01886 1.67944 1.79507 0.95132 1.11214 1.11386 1.79633 1.13583 0.93285 1.11399 1.49829 1.07799 1.03142 1.67428 1.21324 0.83358 0.96403 0.95082 1.21515 0.82861 0.78596 0.91750 1.90319 1.55460 1.55337 1.46065 1.41149 1.18794 1.44950 1.04598 1.19751 0.94552 1.30919 1.06857 0.87425 1.26361 0.98876 0.94089 0.98565 1.70079 1.13373 1.28926 1.37775 0.85157 0.76873 0.78704 0.78834 1.18954 1.21025 1.17811 1.18500 0.95014 0.95067 0.84678 1.22329 1.03983 1.03207 0.93233 1.21187 0.97430 0.99460 0.95708 1.21200 0.97433 0.99922 0.99659 1.21161 1.00197 1.00429 0.91988 1.20814 0.96835 0.99594 0.96960 1.17053 0.82374 0.85919 0.80909 1.91083 1.78435 1.14984 1.58760 0.87962 0.86028 0.88711 0.83523 0.84149 0.91387 0.83999 0.85051 0.83933 0.84478 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.82 11.42 127.77 1.46 3.28 16 2 N -0.47 -13.45 4.02 -499.30 -2.01 -15.45 16 3 N 0.03 0.76 13.55 37.02 0.50 1.26 16 4 N 0.02 0.65 13.55 37.02 0.50 1.15 16 5 N -0.45 -17.00 3.12 -481.41 -1.50 -18.50 16 6 C 0.16 6.22 5.69 85.63 0.49 6.71 16 7 C 0.46 22.05 7.60 87.65 0.67 22.71 16 8 O -0.59 -30.60 12.96 -3.02 -0.04 -30.64 16 9 N -0.39 -19.20 2.66 -458.89 -1.22 -20.42 16 10 C -0.39 -18.33 7.40 84.02 0.62 -17.71 16 11 H 0.11 4.59 7.78 -2.91 -0.02 4.57 16 12 C 0.03 1.35 3.85 84.91 0.33 1.67 16 13 N -0.87 -43.58 11.62 21.65 0.25 -43.33 16 14 Si 0.98 35.60 29.56 68.60 2.03 37.63 16 15 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 16 H -0.28 -10.48 7.11 99.48 0.71 -9.78 16 17 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 18 C 0.16 8.26 5.71 38.22 0.22 8.48 16 19 C -0.21 -10.17 8.97 22.41 0.20 -9.97 16 20 C -0.12 -4.88 10.04 22.25 0.22 -4.66 16 21 C -0.16 -6.02 10.04 22.30 0.22 -5.80 16 22 C -0.12 -4.70 10.04 22.25 0.22 -4.48 16 23 C -0.12 -5.66 7.86 22.41 0.18 -5.49 16 24 C 0.64 23.69 8.77 178.88 1.57 25.26 16 25 O -0.56 -23.49 17.82 -4.72 -0.08 -23.57 16 26 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 1.60 8.12 -2.39 -0.02 1.58 16 29 H 0.15 5.19 8.05 -2.39 -0.02 5.17 16 30 H 0.14 4.90 8.06 -2.38 -0.02 4.89 16 31 H 0.28 13.20 8.32 -92.70 -0.77 12.43 16 32 H 0.14 7.49 4.75 -42.82 -0.20 7.29 16 33 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 34 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 35 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.11 5.42 6.03 -2.91 -0.02 5.40 16 Total: -1.00 -67.24 319.10 5.77 -61.47 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.94 Total: 30.37 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 6.40 Total: 20.03 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -3.47 Total: -95.30 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -0.12 Total: -54.21 kcal Atomic # 14 Polarization: 35.60 SS G_CDS: 2.03 Total: 37.63 kcal Total: -67.24 5.77 -61.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603351336.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.647 kcal (2) G-P(sol) polarization free energy of solvation -67.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds