Wall clock time and date at job start Fri Apr 10 2020 14:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35297 * 116.99850 * 2 1 4 4 N 1.32470 * 119.01894 * 179.97438 * 3 2 1 5 5 C 1.32019 * 120.91332 * 179.97438 * 4 3 2 6 6 C 1.40068 * 118.99035 * 359.97438 * 5 4 3 7 7 C 1.47597 * 120.88278 * 179.97438 * 6 5 4 8 8 O 1.21590 * 120.00470 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99761 * 179.97438 * 7 6 5 10 10 C 1.40098 * 119.99845 * 179.97438 * 9 7 6 11 11 C 1.40415 * 125.97388 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86592 * 179.71252 * 11 10 9 13 13 N 1.34972 * 107.86228 * 0.42579 * 12 11 10 14 14 C 1.46495 * 125.97661 * 179.83749 * 13 12 11 15 15 C 1.50702 * 109.47571 * 124.71645 * 14 13 12 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 N 1.31227 * 125.97326 * 179.97438 * 10 9 7 24 24 C 1.40067 * 118.22835 * 0.25376 * 6 5 4 25 25 N 1.32017 * 118.98736 * 359.49032 * 24 6 5 26 26 H 1.08994 * 109.47965 * 300.00341 * 1 2 3 27 27 H 1.09001 * 109.47122 * 60.00207 * 1 2 3 28 28 H 1.09002 * 109.47138 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.50042 * 179.97438 * 5 4 3 30 30 H 0.97004 * 120.00054 * 0.02562 * 9 7 6 31 31 H 1.07997 * 126.07102 * 0.02562 * 11 10 9 32 32 H 1.07995 * 126.07260 * 180.30004 * 12 11 10 33 33 H 1.09000 * 109.47378 * 4.71304 * 14 13 12 34 34 H 1.09001 * 109.47153 * 244.71425 * 14 13 12 35 35 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 36 36 H 1.08001 * 120.50472 * 179.74540 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 3.3670 1.2522 0.0005 5 6 4.0049 2.4081 0.0000 6 6 3.2602 3.5944 -0.0016 7 6 3.9303 4.9095 -0.0016 8 8 5.1446 4.9732 0.0002 9 7 3.1962 6.0399 -0.0037 10 6 3.8322 7.2881 -0.0032 11 6 5.2192 7.5072 -0.0011 12 6 5.4283 8.8433 -0.0078 13 7 4.2231 9.4509 -0.0043 14 6 3.9883 10.8970 -0.0058 15 6 3.1047 11.2613 -1.1710 16 1 2.7536 10.4926 -1.8434 17 6 2.7456 12.5760 -1.3792 18 7 1.9790 12.8947 -2.3992 19 14 3.3536 13.9058 -0.2166 20 1 2.3781 14.0800 0.8894 21 1 4.6708 13.5096 0.3430 22 1 3.4951 15.1846 -0.9579 23 7 3.2359 8.4571 -0.0055 24 6 1.8628 3.4994 0.0028 25 7 1.3028 2.3039 -0.0019 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 5.0845 2.4384 0.0009 30 1 2.2275 5.9891 -0.0048 31 1 5.9835 6.7441 0.0000 32 1 6.3889 9.3366 -0.0127 33 1 4.9407 11.4196 -0.0947 34 1 3.5003 11.1868 0.9247 35 1 1.7295 13.8202 -2.5480 36 1 1.2528 4.3906 0.0059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735453851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:30 Heat of formation + Delta-G solvation = 54.416765 kcal Electronic energy + Delta-G solvation = -22893.543622 eV Core-core repulsion = 19187.440523 eV Total energy + Delta-G solvation = -3706.103100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.68134 -42.12520 -40.60496 -39.29262 -36.39538 -35.38783 -35.00167 -33.47854 -32.53006 -30.97435 -29.16578 -28.56436 -26.08245 -25.74406 -24.44229 -23.12817 -21.93497 -21.21393 -20.01526 -19.28629 -19.02817 -18.87926 -17.93374 -17.63017 -16.97653 -16.61615 -16.22362 -16.20562 -15.89669 -15.56989 -15.36193 -14.86216 -14.81248 -14.65711 -14.43415 -13.85826 -13.77564 -13.16340 -12.95059 -12.91462 -12.65075 -12.45118 -12.21657 -12.16638 -11.81555 -11.67572 -11.46313 -11.06466 -10.86172 -10.51740 -10.35014 -9.76966 -9.11594 -8.35998 -6.46154 -0.74830 -0.19509 1.00394 1.22509 1.38031 1.40515 1.41432 1.49930 1.51737 2.16583 2.26632 2.30295 2.60017 2.71981 2.96956 3.18783 3.43745 3.48815 3.70421 3.97000 4.22391 4.33470 4.37561 4.47605 4.61569 4.68417 4.74782 4.83088 4.89629 4.92158 5.13233 5.26377 5.39974 5.83866 5.86165 6.01718 6.13955 6.41765 6.59985 6.73471 6.86863 7.02784 7.16913 8.80890 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.029294 B = 0.002568 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.598305 B =10902.446574 C =11640.180689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.297 6.297 3 C 0.510 3.490 4 N -0.545 5.545 5 C 0.260 3.740 6 C -0.280 4.280 7 C 0.590 3.410 8 O -0.532 6.532 9 N -0.619 5.619 10 C 0.266 3.734 11 C -0.291 4.291 12 C 0.061 3.939 13 N -0.343 5.343 14 C 0.238 3.762 15 C -0.545 4.545 16 H 0.028 0.972 17 C 0.014 3.986 18 N -0.943 5.943 19 Si 0.954 3.046 20 H -0.266 1.266 21 H -0.229 1.229 22 H -0.280 1.280 23 N -0.344 5.344 24 C 0.237 3.763 25 N -0.570 5.570 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.134 0.866 29 H 0.208 0.792 30 H 0.423 0.577 31 H 0.173 0.827 32 H 0.210 0.790 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.272 0.728 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 -21.039 8.054 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.197 6.197 3 C 0.210 3.790 4 N -0.271 5.271 5 C 0.093 3.907 6 C -0.289 4.289 7 C 0.378 3.622 8 O -0.408 6.408 9 N -0.268 5.268 10 C 0.011 3.989 11 C -0.322 4.322 12 C -0.087 4.087 13 N -0.125 5.125 14 C 0.119 3.881 15 C -0.584 4.584 16 H 0.046 0.954 17 C -0.185 4.185 18 N -0.582 5.582 19 Si 0.775 3.225 20 H -0.191 1.191 21 H -0.151 1.151 22 H -0.206 1.206 23 N -0.175 5.175 24 C 0.070 3.930 25 N -0.300 5.300 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.152 0.848 29 H 0.224 0.776 30 H 0.261 0.739 31 H 0.190 0.810 32 H 0.227 0.773 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.336 -21.429 7.959 22.862 hybrid contribution 0.098 1.253 -0.161 1.267 sum 0.434 -20.176 7.798 21.635 Atomic orbital electron populations 1.23392 0.73119 1.05915 1.03474 1.86087 1.25848 1.22260 1.85534 1.21284 0.86549 0.85571 0.85641 1.67825 1.07725 1.30233 1.21280 1.23650 1.02020 0.83602 0.81473 1.21134 0.96629 0.94538 1.16620 1.17727 0.86368 0.82655 0.75485 1.90726 1.14077 1.86755 1.49234 1.42294 1.11006 1.01193 1.72306 1.19353 0.92165 0.85835 1.01535 1.21790 0.94724 0.95971 1.19727 1.23273 0.91872 0.93396 1.00135 1.48520 1.03066 1.06473 1.54478 1.19907 0.99118 0.71852 0.97250 1.21238 1.31678 0.93998 1.11438 0.95390 1.25912 0.94318 1.01070 0.97189 1.70048 1.37168 1.19832 1.31107 0.85637 0.80872 0.77530 0.78452 1.19086 1.15125 1.20555 1.77316 1.15372 0.94901 1.29879 1.23714 0.91134 0.95470 0.82673 1.68205 1.40648 0.98967 1.22139 0.91187 0.91337 0.84789 0.77588 0.73859 0.80984 0.77292 0.89894 0.93677 0.91935 0.77725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.35 113.37 1.17 1.54 16 2 O -0.30 -5.56 10.55 -85.83 -0.91 -6.47 16 3 C 0.51 10.64 8.48 180.48 1.53 12.17 16 4 N -0.55 -11.87 10.45 -312.40 -3.26 -15.13 16 5 C 0.26 4.91 10.87 85.11 0.93 5.83 16 6 C -0.28 -5.31 5.90 -19.92 -0.12 -5.43 16 7 C 0.59 14.55 7.75 86.71 0.67 15.22 16 8 O -0.53 -15.76 13.56 -4.00 -0.05 -15.82 16 9 N -0.62 -16.63 5.40 -310.33 -1.68 -18.30 16 10 C 0.27 9.72 8.11 133.35 1.08 10.80 16 11 C -0.29 -10.19 9.60 22.11 0.21 -9.97 16 12 C 0.06 2.11 11.44 83.52 0.96 3.07 16 13 N -0.34 -14.63 3.67 -351.85 -1.29 -15.92 16 14 C 0.24 10.61 5.33 85.63 0.46 11.07 16 15 C -0.55 -30.66 9.79 25.60 0.25 -30.41 16 16 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 17 C 0.01 0.77 5.47 84.65 0.46 1.23 16 18 N -0.94 -57.27 13.96 21.45 0.30 -56.97 16 19 Si 0.95 39.79 27.47 68.60 1.88 41.68 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.23 -8.16 6.54 99.48 0.65 -7.51 16 22 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 23 N -0.34 -15.05 12.42 -54.48 -0.68 -15.72 16 24 C 0.24 3.79 10.81 85.11 0.92 4.71 16 25 N -0.57 -10.47 9.19 -312.40 -2.87 -13.34 16 26 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 27 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 28 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.21 3.17 7.74 -2.91 -0.02 3.14 16 30 H 0.42 8.74 6.95 -92.71 -0.64 8.10 16 31 H 0.17 5.68 5.91 -2.91 -0.02 5.66 16 32 H 0.21 5.22 8.06 -2.91 -0.02 5.20 16 33 H 0.08 3.20 7.12 -2.39 -0.02 3.18 16 34 H 0.05 1.94 7.57 -2.39 -0.02 1.92 16 35 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 36 H 0.21 1.99 6.53 -2.91 -0.02 1.97 16 Total: -1.00 -77.72 321.85 0.42 -77.30 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.45 Total: 18.88 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 8.52 Total: 19.83 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -9.48 Total: -135.40 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.96 Total: -22.28 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 1.88 Total: 41.68 kcal Total: -77.72 0.42 -77.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735453851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.715 kcal (2) G-P(sol) polarization free energy of solvation -77.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds