Wall clock time and date at job start Fri Apr 10 2020 14:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37093 * 120.00249 * 2 1 4 4 H 1.08006 * 119.99968 * 204.39589 * 3 2 1 5 5 C 1.38951 * 120.00084 * 24.39714 * 3 2 1 6 6 N 1.31410 * 119.99899 * 12.65885 * 5 3 2 7 7 Si 1.86792 * 119.99919 * 192.65290 * 5 3 2 8 8 H 1.48500 * 109.47447 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46902 * 120.00287 * 7 5 3 10 10 H 1.48500 * 109.47461 * 239.99960 * 7 5 3 11 11 C 1.34780 * 119.99324 * 180.02562 * 2 1 3 12 12 O 1.21299 * 119.99696 * 179.97438 * 11 2 1 13 13 C 1.50694 * 120.00433 * 359.97438 * 11 2 1 14 14 O 1.42895 * 109.47331 * 180.02562 * 13 11 2 15 15 C 1.35839 * 117.00430 * 180.02562 * 14 13 11 16 16 C 1.38600 * 120.11603 * 0.02562 * 15 14 13 17 17 C 1.38167 * 120.06302 * 179.97438 * 16 15 14 18 18 C 1.38385 * 120.29577 * 0.02562 * 17 16 15 19 19 C 1.38013 * 120.23387 * 0.02562 * 18 17 16 20 20 C 1.39260 * 119.93682 * 359.97273 * 19 18 17 21 21 C 1.48396 * 120.14951 * 180.02562 * 20 19 18 22 22 N 1.34069 * 126.67980 * 179.66738 * 21 20 19 23 23 N 1.28986 * 107.26432 * 179.83484 * 22 21 20 24 24 N 1.28732 * 108.95277 * 0.43179 * 23 22 21 25 25 H 0.96995 * 125.34159 * 179.76596 * 24 23 22 26 26 N 1.28874 * 109.31959 * 359.72353 * 24 23 22 27 27 H 1.08993 * 109.47599 * 265.86526 * 1 2 3 28 28 H 1.09004 * 109.47091 * 25.86200 * 1 2 3 29 29 H 1.08996 * 109.47725 * 145.85859 * 1 2 3 30 30 H 0.96995 * 120.00058 * 179.97438 * 6 5 3 31 31 H 1.09000 * 109.47239 * 60.00326 * 13 11 2 32 32 H 1.09002 * 109.47105 * 300.00192 * 13 11 2 33 33 H 1.08010 * 119.96720 * 359.97438 * 16 15 14 34 34 H 1.08004 * 119.85591 * 179.74291 * 17 16 15 35 35 H 1.08000 * 119.88137 * 180.02562 * 18 17 16 36 36 H 1.08007 * 120.02883 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1582 1.2289 -0.3863 5 6 1.5489 2.3369 0.4971 6 7 0.4349 2.2491 1.1885 7 14 2.3237 4.0072 0.1824 8 1 3.5640 3.8351 -0.6159 9 1 1.3684 4.8628 -0.5662 10 1 2.6543 4.6516 1.4788 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1674 -0.0010 13 6 1.3852 -2.4723 -0.0005 14 8 2.3137 -3.5585 -0.0005 15 6 1.7945 -4.8138 -0.0011 16 6 0.4208 -4.9981 -0.0021 17 6 -0.1061 -6.2754 -0.0032 18 6 0.7322 -7.3764 -0.0027 19 6 2.1019 -7.2070 -0.0006 20 6 2.6435 -5.9240 0.0005 21 6 4.1155 -5.7363 0.0022 22 7 4.7740 -4.5685 -0.0029 23 7 6.0350 -4.8400 0.0044 24 7 6.1874 -6.1182 0.0046 25 1 7.0395 -6.5816 0.0062 26 7 5.0303 -6.6857 0.0033 27 1 -0.3634 -0.0741 1.0249 28 1 -0.3633 0.9248 -0.4483 29 1 -0.3634 -0.8505 -0.5767 30 1 0.0151 3.0515 1.5358 31 1 0.7583 -2.5299 -0.8903 32 1 0.7589 -2.5302 0.8897 33 1 -0.2384 -4.1425 -0.0021 34 1 -1.1770 -6.4152 0.0002 35 1 0.3132 -8.3718 -0.0040 36 1 2.7531 -8.0686 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736779698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:13 Heat of formation + Delta-G solvation = 101.968369 kcal Electronic energy + Delta-G solvation = -23986.853333 eV Core-core repulsion = 20282.812225 eV Total energy + Delta-G solvation = -3704.041108 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.17657 -40.11530 -38.39641 -36.97160 -34.56534 -34.17035 -33.43198 -31.67052 -30.59886 -30.10976 -27.99011 -26.08532 -24.72036 -24.25627 -24.05591 -21.99128 -21.54194 -19.17735 -19.08077 -17.93930 -16.89905 -16.84005 -16.29562 -15.94811 -15.79955 -15.42233 -14.65336 -14.29725 -14.08152 -13.96905 -13.79259 -13.54229 -12.97581 -12.68971 -12.16814 -11.89314 -11.67041 -11.60463 -11.42512 -11.26677 -11.08884 -11.07167 -10.88209 -10.81746 -10.74248 -10.70780 -10.29495 -10.23172 -9.00508 -8.88001 -8.31950 -8.06033 -7.64945 -6.31404 -3.87120 0.76712 1.37481 1.45451 2.41585 2.55418 3.17343 3.21035 3.29096 3.38721 3.77424 3.86764 3.87597 4.19748 4.37673 4.78932 4.87176 5.02743 5.10439 5.11534 5.31001 5.42674 5.51304 5.56749 5.63739 5.72614 5.78823 5.85936 6.23576 6.26387 6.27052 6.39499 6.55998 6.67863 6.80190 7.15503 7.54223 7.59391 8.15577 8.45323 8.50931 9.20903 9.40381 9.97903 10.74117 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.003897 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.107834 B = 7182.936186 C = 8635.964748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.447 5.447 3 C -0.301 4.301 4 H 0.100 0.900 5 C 0.030 3.970 6 N -0.884 5.884 7 Si 0.927 3.073 8 H -0.267 1.267 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.449 3.551 12 O -0.550 6.550 13 C 0.046 3.954 14 O -0.256 6.256 15 C 0.178 3.822 16 C -0.218 4.218 17 C -0.057 4.057 18 C -0.172 4.172 19 C -0.042 4.042 20 C -0.060 4.060 21 C 0.221 3.779 22 N -0.218 5.218 23 N -0.054 5.054 24 N -0.240 5.240 25 H 0.470 0.530 26 N -0.309 5.309 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.023 0.977 30 H 0.267 0.733 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 -18.893 -2.308 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.169 5.169 3 C -0.429 4.429 4 H 0.118 0.882 5 C -0.173 4.173 6 N -0.524 5.524 7 Si 0.753 3.247 8 H -0.191 1.191 9 H -0.207 1.207 10 H -0.207 1.207 11 C 0.235 3.765 12 O -0.431 6.431 13 C -0.033 4.033 14 O -0.165 6.165 15 C 0.128 3.872 16 C -0.237 4.237 17 C -0.076 4.076 18 C -0.191 4.191 19 C -0.062 4.062 20 C -0.064 4.064 21 C -0.058 4.058 22 N -0.091 5.091 23 N -0.050 5.050 24 N -0.084 5.084 25 H 0.323 0.677 26 N -0.161 5.161 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.007 -18.275 -2.224 18.410 hybrid contribution -0.072 0.360 0.030 0.368 sum -0.065 -17.915 -2.194 18.049 Atomic orbital electron populations 1.21524 0.81290 1.00068 1.00621 1.43459 1.05352 1.04170 1.63871 1.19699 1.00760 0.83629 1.38789 0.88233 1.25340 0.96678 1.00134 0.95133 1.69991 1.19324 1.29533 1.33524 0.85850 0.79218 0.81356 0.78232 1.19146 1.20696 1.20744 1.19497 0.88295 0.83796 0.84883 1.90629 1.13151 1.86283 1.53070 1.22732 0.91995 0.86519 1.02017 1.86441 1.33967 1.10418 1.85686 1.19110 0.91378 0.85228 0.91509 1.21301 0.93377 0.99199 1.09829 1.21095 1.00032 0.91693 0.94732 1.20906 0.92755 0.99092 1.06307 1.20945 0.95467 0.94677 0.95101 1.16514 0.84600 0.92190 1.13091 1.23464 0.95456 0.85102 1.01824 1.76652 0.95244 1.22366 1.14852 1.79097 1.14299 0.96852 1.14760 1.47746 1.08758 1.04807 1.47106 0.67671 1.74786 0.91478 1.26363 1.23512 0.92858 0.90373 0.95865 0.92316 0.90512 0.90198 0.84436 0.85365 0.85390 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.35 8.44 59.85 0.51 2.86 16 2 N -0.45 -11.50 3.01 -122.20 -0.37 -11.87 16 3 C -0.30 -8.48 9.24 -14.93 -0.14 -8.61 16 4 H 0.10 2.96 7.45 -52.48 -0.39 2.57 16 5 C 0.03 0.79 5.04 -17.47 -0.09 0.71 16 6 N -0.88 -23.49 10.83 55.50 0.60 -22.89 16 7 Si 0.93 20.91 29.57 -169.99 -5.03 15.88 16 8 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 C 0.45 11.34 7.70 -10.99 -0.08 11.25 16 12 O -0.55 -16.24 16.21 -14.37 -0.23 -16.47 16 13 C 0.05 0.88 3.83 36.00 0.14 1.02 16 14 O -0.26 -5.14 8.02 -39.14 -0.31 -5.45 16 15 C 0.18 2.88 6.69 -38.88 -0.26 2.62 16 16 C -0.22 -2.77 9.03 -39.47 -0.36 -3.12 16 17 C -0.06 -0.57 10.03 -39.55 -0.40 -0.96 16 18 C -0.17 -1.66 10.03 -39.61 -0.40 -2.06 16 19 C -0.04 -0.48 9.69 -39.28 -0.38 -0.86 16 20 C -0.06 -0.91 5.89 -104.76 -0.62 -1.52 16 21 C 0.22 3.69 7.91 -156.29 -1.24 2.45 16 22 N -0.22 -4.31 11.06 32.15 0.36 -3.96 16 23 N -0.05 -0.90 13.47 60.35 0.81 -0.09 16 24 N -0.24 -2.85 7.90 60.35 0.48 -2.37 16 25 H 0.47 2.95 8.96 -340.36 -3.05 -0.10 16 26 N -0.31 -4.21 12.08 32.16 0.39 -3.82 16 27 H 0.05 1.17 7.83 -51.93 -0.41 0.76 16 28 H 0.08 1.79 6.80 -51.93 -0.35 1.44 16 29 H 0.02 0.40 6.61 -51.93 -0.34 0.05 16 30 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.08 1.24 6.93 -51.93 -0.36 0.88 16 32 H 0.08 1.35 7.63 -51.93 -0.40 0.95 16 33 H 0.14 1.55 6.30 -52.48 -0.33 1.22 16 34 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.14 1.31 7.88 -52.48 -0.41 0.90 16 LS Contribution 317.82 15.07 4.79 4.79 Total: -1.00 -36.02 317.82 -7.85 -43.88 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.02 Total: -1.39 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -3.31 Total: 3.76 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 2.27 Total: -44.99 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.55 Total: -21.93 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.02 -7.85 -43.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736779698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.845 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds