Wall clock time and date at job start Fri Apr 10 2020 14:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37093 * 120.00249 * 2 1 4 4 H 1.08006 * 119.99968 * 204.39589 * 3 2 1 5 5 C 1.38951 * 120.00084 * 24.39714 * 3 2 1 6 6 N 1.31410 * 119.99899 * 12.65885 * 5 3 2 7 7 Si 1.86792 * 119.99919 * 192.65290 * 5 3 2 8 8 H 1.48500 * 109.47447 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46902 * 120.00287 * 7 5 3 10 10 H 1.48500 * 109.47461 * 239.99960 * 7 5 3 11 11 C 1.34780 * 119.99324 * 180.02562 * 2 1 3 12 12 O 1.21299 * 119.99696 * 179.97438 * 11 2 1 13 13 C 1.50694 * 120.00433 * 359.97438 * 11 2 1 14 14 O 1.42895 * 109.47331 * 180.02562 * 13 11 2 15 15 C 1.35839 * 117.00430 * 180.02562 * 14 13 11 16 16 C 1.38600 * 120.11603 * 0.02562 * 15 14 13 17 17 C 1.38167 * 120.06302 * 179.97438 * 16 15 14 18 18 C 1.38385 * 120.29577 * 0.02562 * 17 16 15 19 19 C 1.38013 * 120.23387 * 0.02562 * 18 17 16 20 20 C 1.39260 * 119.93682 * 359.97273 * 19 18 17 21 21 C 1.48396 * 120.14951 * 180.02562 * 20 19 18 22 22 N 1.34069 * 126.67980 * 179.66738 * 21 20 19 23 23 N 1.28986 * 107.26432 * 179.83484 * 22 21 20 24 24 N 1.28732 * 108.95277 * 0.43179 * 23 22 21 25 25 H 0.96995 * 125.34159 * 179.76596 * 24 23 22 26 26 N 1.28874 * 109.31959 * 359.72353 * 24 23 22 27 27 H 1.08993 * 109.47599 * 265.86526 * 1 2 3 28 28 H 1.09004 * 109.47091 * 25.86200 * 1 2 3 29 29 H 1.08996 * 109.47725 * 145.85859 * 1 2 3 30 30 H 0.96995 * 120.00058 * 179.97438 * 6 5 3 31 31 H 1.09000 * 109.47239 * 60.00326 * 13 11 2 32 32 H 1.09002 * 109.47105 * 300.00192 * 13 11 2 33 33 H 1.08010 * 119.96720 * 359.97438 * 16 15 14 34 34 H 1.08004 * 119.85591 * 179.74291 * 17 16 15 35 35 H 1.08000 * 119.88137 * 180.02562 * 18 17 16 36 36 H 1.08007 * 120.02883 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1582 1.2289 -0.3863 5 6 1.5489 2.3369 0.4971 6 7 0.4349 2.2491 1.1885 7 14 2.3237 4.0072 0.1824 8 1 3.5640 3.8351 -0.6159 9 1 1.3684 4.8628 -0.5662 10 1 2.6543 4.6516 1.4788 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1674 -0.0010 13 6 1.3852 -2.4723 -0.0005 14 8 2.3137 -3.5585 -0.0005 15 6 1.7945 -4.8138 -0.0011 16 6 0.4208 -4.9981 -0.0021 17 6 -0.1061 -6.2754 -0.0032 18 6 0.7322 -7.3764 -0.0027 19 6 2.1019 -7.2070 -0.0006 20 6 2.6435 -5.9240 0.0005 21 6 4.1155 -5.7363 0.0022 22 7 4.7740 -4.5685 -0.0029 23 7 6.0350 -4.8400 0.0044 24 7 6.1874 -6.1182 0.0046 25 1 7.0395 -6.5816 0.0062 26 7 5.0303 -6.6857 0.0033 27 1 -0.3634 -0.0741 1.0249 28 1 -0.3633 0.9248 -0.4483 29 1 -0.3634 -0.8505 -0.5767 30 1 0.0151 3.0515 1.5358 31 1 0.7583 -2.5299 -0.8903 32 1 0.7589 -2.5302 0.8897 33 1 -0.2384 -4.1425 -0.0021 34 1 -1.1770 -6.4152 0.0002 35 1 0.3132 -8.3718 -0.0040 36 1 2.7531 -8.0686 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736779698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:12 Heat of formation + Delta-G solvation = 76.148721 kcal Electronic energy + Delta-G solvation = -23987.972957 eV Core-core repulsion = 20282.812225 eV Total energy + Delta-G solvation = -3705.160732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.34562 -41.30397 -40.09978 -38.22952 -36.57998 -35.33805 -34.54723 -33.70429 -31.59731 -31.18088 -29.52964 -27.88367 -26.16485 -25.67861 -25.31892 -23.09196 -22.58556 -20.86522 -20.25773 -19.11921 -18.84192 -18.06759 -17.66163 -17.27761 -17.24225 -16.85416 -16.24029 -15.75332 -15.48428 -15.35463 -15.14727 -14.63561 -14.46525 -13.97933 -13.60514 -13.40082 -13.25817 -13.12775 -13.07674 -12.65148 -12.47299 -12.40727 -12.29189 -12.16002 -12.11079 -11.99355 -11.85386 -11.83192 -11.00677 -10.31388 -9.79479 -9.66732 -9.09961 -8.34872 -5.99444 -0.22013 0.27494 0.47942 1.36235 1.41443 1.42370 1.50736 1.55072 1.91683 1.99144 2.36518 2.78334 2.85951 3.07263 3.19863 3.28577 3.79644 3.97908 4.08762 4.11260 4.24095 4.34425 4.41178 4.53008 4.55701 4.61572 4.66132 4.99620 5.03572 5.32743 5.37715 5.44033 5.45636 5.55183 5.70031 5.84052 6.07987 6.38153 6.54975 7.17636 7.26216 7.42268 8.01324 8.68677 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.003897 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.107834 B = 7182.936186 C = 8635.964748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.459 5.459 3 C -0.343 4.343 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.894 5.894 7 Si 0.989 3.011 8 H -0.277 1.277 9 H -0.261 1.261 10 H -0.276 1.276 11 C 0.433 3.567 12 O -0.609 6.609 13 C 0.063 3.937 14 O -0.295 6.295 15 C 0.141 3.859 16 C -0.221 4.221 17 C -0.047 4.047 18 C -0.155 4.155 19 C -0.041 4.041 20 C -0.087 4.087 21 C 0.208 3.792 22 N -0.279 5.279 23 N -0.077 5.077 24 N -0.204 5.204 25 H 0.492 0.508 26 N -0.292 5.292 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.275 0.725 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.151 0.849 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 -21.113 -2.406 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.180 5.180 3 C -0.471 4.471 4 H 0.085 0.915 5 C -0.200 4.200 6 N -0.532 5.532 7 Si 0.812 3.188 8 H -0.202 1.202 9 H -0.186 1.186 10 H -0.201 1.201 11 C 0.222 3.778 12 O -0.494 6.494 13 C -0.015 4.015 14 O -0.206 6.206 15 C 0.092 3.908 16 C -0.239 4.239 17 C -0.065 4.065 18 C -0.173 4.173 19 C -0.061 4.061 20 C -0.091 4.091 21 C -0.071 4.071 22 N -0.151 5.151 23 N -0.072 5.072 24 N -0.054 5.054 25 H 0.351 0.649 26 N -0.146 5.146 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.168 0.832 34 H 0.185 0.815 35 H 0.186 0.814 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.506 -20.509 -2.317 20.791 hybrid contribution 0.694 0.845 0.085 1.097 sum -1.812 -19.664 -2.232 19.873 Atomic orbital electron populations 1.21552 0.78834 1.01363 1.01000 1.43730 1.06952 1.03883 1.63441 1.19597 1.00459 0.85835 1.41162 0.91531 1.26041 0.97052 1.02744 0.94211 1.70043 1.19570 1.30794 1.32825 0.84955 0.78347 0.77275 0.78218 1.20174 1.18585 1.20123 1.20569 0.88130 0.85776 0.83328 1.90578 1.15938 1.87521 1.55398 1.22461 0.91004 0.83628 1.04416 1.86383 1.35082 1.11948 1.87183 1.19462 0.93179 0.83751 0.94398 1.21546 0.91840 1.01142 1.09388 1.21577 1.02097 0.90429 0.92411 1.21414 0.91697 1.00948 1.03254 1.21232 0.96882 0.93529 0.94425 1.16917 0.83875 0.93546 1.14747 1.23908 0.96745 0.84622 1.01835 1.76631 0.96440 1.24651 1.17358 1.78996 1.13733 0.98494 1.16023 1.47798 1.09558 1.03888 1.44188 0.64944 1.74748 0.91385 1.25422 1.23085 0.93365 0.92002 0.90976 0.91560 0.87346 0.87945 0.83179 0.81470 0.81420 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.91 8.44 127.77 1.08 5.99 16 2 N -0.46 -24.32 3.01 -658.89 -1.98 -26.30 16 3 C -0.34 -20.14 9.24 84.04 0.78 -19.36 16 4 H 0.07 4.25 7.45 -2.91 -0.02 4.23 16 5 C 0.00 0.08 5.04 84.93 0.43 0.51 16 6 N -0.89 -47.38 10.83 21.66 0.23 -47.14 16 7 Si 0.99 43.35 29.57 68.60 2.03 45.38 16 8 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 9 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 C 0.43 22.78 7.70 87.65 0.68 23.46 16 12 O -0.61 -38.47 16.21 15.95 0.26 -38.21 16 13 C 0.06 2.41 3.83 71.23 0.27 2.68 16 14 O -0.29 -12.21 8.02 -72.70 -0.58 -12.80 16 15 C 0.14 4.50 6.69 22.73 0.15 4.65 16 16 C -0.22 -5.01 9.03 22.34 0.20 -4.81 16 17 C -0.05 -0.72 10.03 22.29 0.22 -0.50 16 18 C -0.16 -2.27 10.03 22.25 0.22 -2.05 16 19 C -0.04 -0.83 9.69 22.46 0.22 -0.61 16 20 C -0.09 -2.60 5.89 -19.96 -0.12 -2.71 16 21 C 0.21 7.10 7.91 137.35 1.09 8.19 16 22 N -0.28 -11.65 11.06 -52.21 -0.58 -12.23 16 23 N -0.08 -2.68 13.47 37.02 0.50 -2.18 16 24 N -0.20 -4.83 7.90 37.02 0.29 -4.54 16 25 H 0.49 5.76 8.96 -347.54 -3.12 2.64 16 26 N -0.29 -7.86 12.08 -52.15 -0.63 -8.49 16 27 H 0.05 2.08 7.83 -2.39 -0.02 2.06 16 28 H 0.06 2.81 6.80 -2.38 -0.02 2.80 16 29 H 0.07 2.32 6.61 -2.39 -0.02 2.31 16 30 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 31 H 0.11 3.34 6.93 -2.39 -0.02 3.32 16 32 H 0.10 3.36 7.63 -2.39 -0.02 3.34 16 33 H 0.15 2.90 6.30 -2.91 -0.02 2.88 16 34 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 35 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 36 H 0.15 2.50 7.88 -2.91 -0.02 2.47 16 Total: -1.00 -85.35 317.82 2.80 -82.56 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -1.96 Total: 8.50 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 5.22 Total: 15.45 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -2.17 Total: -100.88 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.32 Total: -51.01 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -85.35 2.80 -82.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736779698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.705 kcal (2) G-P(sol) polarization free energy of solvation -85.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds