Wall clock time and date at job start Fri Apr 10 2020 14:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28783 * 125.45012 * 2 1 4 4 N 1.28991 * 108.72858 * 179.73127 * 3 2 1 5 5 C 1.33323 * 107.35145 * 0.42729 * 4 3 2 6 6 C 1.50700 * 126.54812 * 179.83904 * 5 4 3 7 7 N 1.46500 * 109.47183 * 269.68902 * 6 5 4 8 8 C 1.34776 * 120.00393 * 179.97438 * 7 6 5 9 9 O 1.21590 * 119.99516 * 0.02562 * 8 7 6 10 10 C 1.47530 * 120.00247 * 180.02562 * 8 7 6 11 11 C 1.39667 * 120.19719 * 0.02562 * 10 8 7 12 12 C 1.37827 * 119.91983 * 180.02562 * 11 10 8 13 13 C 1.38578 * 120.32181 * 359.97438 * 12 11 10 14 14 C 1.38013 * 120.40203 * 0.02562 * 13 12 11 15 15 C 1.38834 * 120.07724 * 0.02562 * 14 13 12 16 16 O 1.35515 * 120.16496 * 179.97438 * 15 14 13 17 17 C 1.34814 * 117.00034 * 354.39344 * 16 15 14 18 18 H 1.07997 * 119.99773 * 5.05367 * 17 16 15 19 19 C 1.38697 * 119.99986 * 185.05111 * 17 16 15 20 20 N 1.31517 * 119.99900 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00145 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47024 * 89.99696 * 21 19 17 23 23 H 1.48502 * 109.47115 * 209.99533 * 21 19 17 24 24 H 1.48500 * 109.46976 * 329.99767 * 21 19 17 25 25 N 1.28879 * 125.44935 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.47059 * 270.00165 * 1 2 3 27 27 H 1.08997 * 109.47519 * 29.99661 * 1 2 3 28 28 H 1.09002 * 109.47022 * 149.99983 * 1 2 3 29 29 H 1.08998 * 109.47374 * 149.69316 * 6 5 4 30 30 H 1.09002 * 109.47343 * 29.69013 * 6 5 4 31 31 H 0.97008 * 119.99906 * 0.02562 * 7 6 5 32 32 H 1.07995 * 120.04349 * 359.97438 * 11 10 8 33 33 H 1.08001 * 119.83933 * 180.02562 * 12 11 10 34 34 H 1.08006 * 119.79506 * 179.74015 * 13 12 11 35 35 H 1.08006 * 119.96558 * 179.97438 * 14 13 12 36 36 H 0.97010 * 120.00030 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4473 0.6780 0.0057 5 6 3.4620 -0.6552 -0.0001 6 6 4.6825 -1.5392 -0.0001 7 7 5.0779 -1.8257 -1.3813 8 6 6.1513 -2.6025 -1.6277 9 8 6.7912 -3.0660 -0.7035 10 6 6.5499 -2.8905 -3.0186 11 6 5.8181 -2.3598 -4.0833 12 6 6.1952 -2.6330 -5.3805 13 6 7.2984 -3.4321 -5.6349 14 6 8.0311 -3.9635 -4.5929 15 6 7.6654 -3.6999 -3.2798 16 8 8.3832 -4.2211 -2.2553 17 6 9.3708 -5.0812 -2.5753 18 1 9.6132 -5.2636 -3.6118 19 6 10.0754 -5.7319 -1.5733 20 7 11.0391 -6.5706 -1.8855 21 14 9.6556 -5.4168 0.2195 22 1 8.6196 -6.3840 0.6625 23 1 10.8754 -5.5830 1.0501 24 1 9.1382 -4.0332 0.3709 25 7 2.2125 -1.0499 -0.0005 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 4.4547 -2.4731 0.5137 30 1 5.4988 -1.0316 0.5137 31 1 4.5676 -1.4556 -2.1187 32 1 4.9573 -1.7368 -3.8904 33 1 5.6286 -2.2216 -6.2028 34 1 7.5839 -3.6442 -6.6547 35 1 8.8894 -4.5857 -4.7992 36 1 11.5318 -7.0259 -1.1847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786476657.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:29 Heat of formation + Delta-G solvation = 107.512289 kcal Electronic energy + Delta-G solvation = -23595.162539 eV Core-core repulsion = 19891.361834 eV Total energy + Delta-G solvation = -3703.800705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.64837 -39.81049 -38.34310 -36.53833 -35.79974 -34.59038 -33.10804 -32.44819 -30.89203 -29.29502 -29.19694 -27.13598 -25.27007 -23.53723 -23.24608 -22.38983 -21.23219 -20.21620 -18.29231 -17.91950 -17.76610 -17.61870 -16.46425 -15.83464 -15.10353 -14.81422 -14.57360 -14.31863 -14.16401 -14.07422 -13.88552 -13.75718 -13.67681 -13.24498 -12.76011 -12.68675 -12.35628 -12.16275 -12.10717 -11.40407 -11.28934 -11.27690 -11.22847 -10.84050 -10.71032 -10.60619 -10.03868 -9.63256 -9.11149 -8.89617 -8.87020 -8.39369 -7.48498 -6.46643 -4.11814 0.88765 1.55861 1.59251 1.74943 2.18597 3.33177 3.38202 3.39328 3.52852 3.67849 3.70233 3.93276 4.36619 4.38423 4.46801 4.52977 4.69232 4.72845 5.07004 5.09535 5.31819 5.37530 5.42304 5.55769 5.60073 5.67801 5.79443 5.93307 6.03221 6.36774 6.51058 6.59914 6.81864 6.99685 7.14294 7.47493 7.66313 7.83764 7.95070 8.04588 8.77575 8.88882 9.51363 10.58335 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.003839 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.163183 B = 7292.539391 C = 8666.116553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.142 5.142 3 N -0.063 5.063 4 N -0.267 5.267 5 C 0.157 3.843 6 C 0.224 3.776 7 N -0.737 5.737 8 C 0.567 3.433 9 O -0.514 6.514 10 C -0.226 4.226 11 C -0.039 4.039 12 C -0.221 4.221 13 C -0.050 4.050 14 C -0.226 4.226 15 C 0.203 3.797 16 O -0.165 6.165 17 C -0.396 4.396 18 H 0.108 0.892 19 C 0.072 3.928 20 N -0.869 5.869 21 Si 0.900 3.100 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.237 1.237 25 N -0.291 5.291 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.396 0.604 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.139 0.861 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.567 11.567 0.146 23.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.054 5.054 3 N -0.057 5.057 4 N -0.139 5.139 5 C -0.125 4.125 6 C 0.097 3.903 7 N -0.394 5.394 8 C 0.357 3.643 9 O -0.389 6.389 10 C -0.230 4.230 11 C -0.058 4.058 12 C -0.240 4.240 13 C -0.068 4.068 14 C -0.245 4.245 15 C 0.145 3.855 16 O -0.064 6.064 17 C -0.471 4.471 18 H 0.126 0.874 19 C -0.134 4.134 20 N -0.505 5.505 21 Si 0.725 3.275 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.160 1.160 25 N -0.143 5.143 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.231 0.769 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.156 0.844 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.297 11.633 1.217 23.426 hybrid contribution -0.236 -0.252 0.180 0.390 sum -20.533 11.380 1.397 23.517 Atomic orbital electron populations 1.22460 0.69001 1.06972 1.06113 1.50117 1.10835 1.00961 1.43536 1.79010 0.96520 1.14287 1.15890 1.75923 1.09746 1.11090 1.17165 1.25652 0.93148 0.90697 1.03037 1.19285 0.88608 0.96439 0.85944 1.45785 1.32338 1.54597 1.06665 1.18146 0.79087 0.77651 0.89382 1.90873 1.52230 1.50340 1.45452 1.18747 1.00997 1.11234 0.92070 1.20743 0.96691 0.96174 0.92199 1.20532 1.01227 1.06458 0.95795 1.20968 0.93619 0.94089 0.98147 1.21285 1.04338 1.07193 0.91707 1.18990 0.88508 0.90452 0.87558 1.83774 1.40670 1.51711 1.30291 1.20928 1.10015 1.19620 0.96567 0.87425 1.24502 0.94347 0.93986 1.00552 1.69641 1.20250 1.25412 1.35191 0.86200 0.77482 0.82252 0.81603 1.19912 1.21249 1.15982 1.74773 1.03311 1.15172 1.21023 0.87965 0.86871 0.86979 0.88522 0.88140 0.76921 0.87075 0.87030 0.86792 0.84350 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.29 11.63 59.85 0.70 0.98 16 2 N -0.14 -1.32 4.40 -16.69 -0.07 -1.40 16 3 N -0.06 -0.74 13.25 60.35 0.80 0.06 16 4 N -0.27 -3.64 12.50 32.45 0.41 -3.23 16 5 C 0.16 2.03 7.74 -156.62 -1.21 0.81 16 6 C 0.22 3.09 6.30 -5.19 -0.03 3.06 16 7 N -0.74 -11.23 5.50 -62.53 -0.34 -11.58 16 8 C 0.57 11.38 7.76 -12.47 -0.10 11.28 16 9 O -0.51 -12.49 15.17 -16.57 -0.25 -12.74 16 10 C -0.23 -4.57 5.89 -104.81 -0.62 -5.19 16 11 C -0.04 -0.63 9.53 -39.20 -0.37 -1.01 16 12 C -0.22 -3.45 10.03 -39.61 -0.40 -3.84 16 13 C -0.05 -0.85 10.03 -39.54 -0.40 -1.24 16 14 C -0.23 -4.74 9.16 -39.44 -0.36 -5.10 16 15 C 0.20 4.76 6.66 -38.60 -0.26 4.50 16 16 O -0.16 -4.49 6.67 -21.04 -0.14 -4.63 16 17 C -0.40 -11.28 9.95 30.90 0.31 -10.97 16 18 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 19 C 0.07 2.06 5.49 -17.52 -0.10 1.96 16 20 N -0.87 -25.22 13.96 55.48 0.77 -24.44 16 21 Si 0.90 23.06 28.62 -169.99 -4.86 18.20 16 22 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.24 -6.38 7.11 56.52 0.40 -5.97 16 25 N -0.29 -3.37 12.13 32.47 0.39 -2.98 16 26 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.40 5.15 6.49 -40.82 -0.27 4.89 16 32 H 0.11 1.41 6.40 -52.49 -0.34 1.07 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 35 H 0.14 3.01 5.64 -52.48 -0.30 2.71 16 36 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 322.79 15.07 4.86 4.86 Total: -1.00 -35.39 322.79 -4.55 -39.94 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.28 Total: 2.71 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.84 Total: -4.76 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 1.96 Total: -43.57 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.39 Total: -17.37 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.86 Total: 18.20 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.39 -4.55 -39.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786476657.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.448 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds