Wall clock time and date at job start Fri Apr 10 2020 14:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28783 * 125.45012 * 2 1 4 4 N 1.28991 * 108.72858 * 179.73127 * 3 2 1 5 5 C 1.33323 * 107.35145 * 0.42729 * 4 3 2 6 6 C 1.50700 * 126.54812 * 179.83904 * 5 4 3 7 7 N 1.46500 * 109.47183 * 269.68902 * 6 5 4 8 8 C 1.34776 * 120.00393 * 179.97438 * 7 6 5 9 9 O 1.21590 * 119.99516 * 0.02562 * 8 7 6 10 10 C 1.47530 * 120.00247 * 180.02562 * 8 7 6 11 11 C 1.39667 * 120.19719 * 0.02562 * 10 8 7 12 12 C 1.37827 * 119.91983 * 180.02562 * 11 10 8 13 13 C 1.38578 * 120.32181 * 359.97438 * 12 11 10 14 14 C 1.38013 * 120.40203 * 0.02562 * 13 12 11 15 15 C 1.38834 * 120.07724 * 0.02562 * 14 13 12 16 16 O 1.35515 * 120.16496 * 179.97438 * 15 14 13 17 17 C 1.34814 * 117.00034 * 354.39344 * 16 15 14 18 18 H 1.07997 * 119.99773 * 5.05367 * 17 16 15 19 19 C 1.38697 * 119.99986 * 185.05111 * 17 16 15 20 20 N 1.31517 * 119.99900 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00145 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47024 * 89.99696 * 21 19 17 23 23 H 1.48502 * 109.47115 * 209.99533 * 21 19 17 24 24 H 1.48500 * 109.46976 * 329.99767 * 21 19 17 25 25 N 1.28879 * 125.44935 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.47059 * 270.00165 * 1 2 3 27 27 H 1.08997 * 109.47519 * 29.99661 * 1 2 3 28 28 H 1.09002 * 109.47022 * 149.99983 * 1 2 3 29 29 H 1.08998 * 109.47374 * 149.69316 * 6 5 4 30 30 H 1.09002 * 109.47343 * 29.69013 * 6 5 4 31 31 H 0.97008 * 119.99906 * 0.02562 * 7 6 5 32 32 H 1.07995 * 120.04349 * 359.97438 * 11 10 8 33 33 H 1.08001 * 119.83933 * 180.02562 * 12 11 10 34 34 H 1.08006 * 119.79506 * 179.74015 * 13 12 11 35 35 H 1.08006 * 119.96558 * 179.97438 * 14 13 12 36 36 H 0.97010 * 120.00030 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4473 0.6780 0.0057 5 6 3.4620 -0.6552 -0.0001 6 6 4.6825 -1.5392 -0.0001 7 7 5.0779 -1.8257 -1.3813 8 6 6.1513 -2.6025 -1.6277 9 8 6.7912 -3.0660 -0.7035 10 6 6.5499 -2.8905 -3.0186 11 6 5.8181 -2.3598 -4.0833 12 6 6.1952 -2.6330 -5.3805 13 6 7.2984 -3.4321 -5.6349 14 6 8.0311 -3.9635 -4.5929 15 6 7.6654 -3.6999 -3.2798 16 8 8.3832 -4.2211 -2.2553 17 6 9.3708 -5.0812 -2.5753 18 1 9.6132 -5.2636 -3.6118 19 6 10.0754 -5.7319 -1.5733 20 7 11.0391 -6.5706 -1.8855 21 14 9.6556 -5.4168 0.2195 22 1 8.6196 -6.3840 0.6625 23 1 10.8754 -5.5830 1.0501 24 1 9.1382 -4.0332 0.3709 25 7 2.2125 -1.0499 -0.0005 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 4.4547 -2.4731 0.5137 30 1 5.4988 -1.0316 0.5137 31 1 4.5676 -1.4556 -2.1187 32 1 4.9573 -1.7368 -3.8904 33 1 5.6286 -2.2216 -6.2028 34 1 7.5839 -3.6442 -6.6547 35 1 8.8894 -4.5857 -4.7992 36 1 11.5318 -7.0259 -1.1847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786476657.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:28 Heat of formation + Delta-G solvation = 80.814212 kcal Electronic energy + Delta-G solvation = -23596.320255 eV Core-core repulsion = 19891.361834 eV Total energy + Delta-G solvation = -3704.958421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.50712 -41.42088 -39.97477 -38.16509 -36.79175 -35.67857 -34.50260 -34.14326 -32.30939 -30.79843 -30.04519 -28.20161 -27.19491 -24.80270 -24.13475 -23.51199 -22.78830 -21.72211 -19.81460 -19.69478 -18.60043 -18.54598 -18.00398 -17.23318 -16.52656 -16.39881 -16.07228 -15.74094 -15.57856 -15.47085 -15.23377 -14.90402 -14.50585 -14.27088 -14.17383 -14.03804 -14.00670 -13.74006 -13.11443 -12.95533 -12.84426 -12.56989 -12.39030 -12.14407 -12.12281 -11.99509 -11.57172 -11.38917 -10.94657 -10.74522 -10.29341 -9.86252 -9.14891 -8.55640 -6.24742 0.03832 0.06060 0.64970 0.74424 1.03223 1.28633 1.33615 1.61896 1.98599 2.18804 2.32661 2.67472 2.77476 3.01683 3.11253 3.17591 3.81745 3.99734 4.02282 4.17430 4.24809 4.26646 4.46512 4.47334 4.50766 4.57520 4.61384 4.71164 4.80481 5.04894 5.11184 5.24492 5.28925 5.47501 5.61791 5.69904 5.84501 6.15304 6.47070 6.81054 7.17161 7.27675 7.59711 8.54627 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.003839 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.163183 B = 7292.539391 C = 8666.116553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.122 5.122 3 N -0.072 5.072 4 N -0.295 5.295 5 C 0.150 3.850 6 C 0.226 3.774 7 N -0.713 5.713 8 C 0.564 3.436 9 O -0.563 6.563 10 C -0.232 4.232 11 C -0.031 4.031 12 C -0.190 4.190 13 C -0.040 4.040 14 C -0.249 4.249 15 C 0.166 3.834 16 O -0.207 6.207 17 C -0.403 4.403 18 H 0.092 0.908 19 C 0.026 3.974 20 N -0.912 5.912 21 Si 0.955 3.045 22 H -0.275 1.275 23 H -0.267 1.267 24 H -0.262 1.262 25 N -0.294 5.294 26 H 0.124 0.876 27 H 0.138 0.862 28 H 0.130 0.870 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.410 0.590 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.152 0.848 35 H 0.117 0.883 36 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.724 13.851 -1.554 28.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.037 5.037 3 N -0.065 5.065 4 N -0.166 5.166 5 C -0.132 4.132 6 C 0.100 3.900 7 N -0.369 5.369 8 C 0.355 3.645 9 O -0.442 6.442 10 C -0.237 4.237 11 C -0.049 4.049 12 C -0.208 4.208 13 C -0.058 4.058 14 C -0.268 4.268 15 C 0.112 3.888 16 O -0.111 6.111 17 C -0.479 4.479 18 H 0.110 0.890 19 C -0.175 4.175 20 N -0.552 5.552 21 Si 0.779 3.221 22 H -0.200 1.200 23 H -0.192 1.192 24 H -0.187 1.187 25 N -0.147 5.147 26 H 0.143 0.857 27 H 0.156 0.844 28 H 0.149 0.851 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.247 0.753 32 H 0.175 0.825 33 H 0.183 0.817 34 H 0.170 0.830 35 H 0.135 0.865 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.532 13.982 -0.526 28.242 hybrid contribution 0.557 -0.673 0.418 0.968 sum -23.975 13.309 -0.109 27.421 Atomic orbital electron populations 1.23136 0.65560 1.09162 1.08274 1.50677 1.12432 0.99834 1.40717 1.78946 0.96219 1.14854 1.16444 1.75889 1.10967 1.11417 1.18358 1.25262 0.93161 0.90425 1.04379 1.19210 0.89259 0.96769 0.84798 1.45508 1.30669 1.52715 1.08034 1.18255 0.79621 0.77726 0.88942 1.90860 1.54118 1.52476 1.46762 1.19155 1.00367 1.10474 0.93656 1.21277 0.96986 0.95310 0.91341 1.21207 0.99482 1.03164 0.96940 1.21443 0.92995 0.92637 0.98744 1.21340 1.04966 1.08369 0.92165 1.19704 0.89657 0.91310 0.88117 1.83761 1.41990 1.53707 1.31643 1.20895 1.10762 1.20249 0.95973 0.89020 1.25057 0.94776 0.94418 1.03203 1.69687 1.22007 1.27525 1.35958 0.85417 0.77569 0.80260 0.78890 1.20015 1.19213 1.18669 1.74746 1.02977 1.15932 1.21081 0.85741 0.84419 0.85139 0.88474 0.88684 0.75252 0.82505 0.81745 0.83033 0.86506 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.17 11.63 127.77 1.49 1.65 16 2 N -0.12 -1.90 4.40 -206.73 -0.91 -2.81 16 3 N -0.07 -1.50 13.25 37.02 0.49 -1.01 16 4 N -0.30 -7.56 12.50 -51.26 -0.64 -8.20 16 5 C 0.15 3.62 7.74 138.55 1.07 4.69 16 6 C 0.23 6.08 6.30 85.63 0.54 6.61 16 7 N -0.71 -20.57 5.50 -470.01 -2.58 -23.15 16 8 C 0.56 22.54 7.76 86.69 0.67 23.21 16 9 O -0.56 -28.38 15.17 16.90 0.26 -28.12 16 10 C -0.23 -9.13 5.89 -19.99 -0.12 -9.25 16 11 C -0.03 -0.85 9.53 22.52 0.21 -0.64 16 12 C -0.19 -4.76 10.03 22.25 0.22 -4.53 16 13 C -0.04 -1.22 10.03 22.30 0.22 -1.00 16 14 C -0.25 -10.53 9.16 22.36 0.20 -10.33 16 15 C 0.17 7.97 6.66 22.91 0.15 8.12 16 16 O -0.21 -11.98 6.67 0.89 0.01 -11.97 16 17 C -0.40 -24.50 9.95 67.93 0.68 -23.83 16 18 H 0.09 5.64 5.44 -2.91 -0.02 5.62 16 19 C 0.03 1.56 5.49 84.85 0.47 2.03 16 20 N -0.91 -55.81 13.96 21.62 0.30 -55.50 16 21 Si 0.95 50.53 28.62 68.60 1.96 52.49 16 22 H -0.27 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.26 -14.83 7.11 99.48 0.71 -14.12 16 25 N -0.29 -6.07 12.13 -51.20 -0.62 -6.70 16 26 H 0.12 -0.17 8.14 -2.38 -0.02 -0.19 16 27 H 0.14 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.41 9.28 6.49 -92.70 -0.60 8.68 16 32 H 0.16 2.93 6.40 -2.91 -0.02 2.92 16 33 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.12 5.39 5.64 -2.91 -0.02 5.38 16 36 H 0.29 16.10 8.31 -92.70 -0.77 15.33 16 Total: -1.00 -84.24 322.79 4.63 -79.61 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.55 Total: 8.63 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 5.81 Total: -3.26 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -3.96 Total: -97.37 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: 0.26 Total: -40.09 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 1.96 Total: 52.49 kcal Total: -84.24 4.63 -79.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786476657.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.422 kcal (2) G-P(sol) polarization free energy of solvation -84.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds