Wall clock time and date at job start Fri Apr 10 2020 14:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37433 * 119.80136 * 2 1 4 4 N 1.37273 * 120.30093 * 359.95932 * 3 2 1 5 5 C 1.38958 * 119.99872 * 265.70027 * 4 3 2 6 6 C 1.40058 * 120.75694 * 174.74074 * 5 4 3 7 7 N 1.31655 * 119.14216 * 179.97438 * 6 5 4 8 8 C 1.33603 * 120.79301 * 359.97438 * 7 6 5 9 9 C 1.41138 * 119.17992 * 179.97438 * 8 7 6 10 10 H 1.07995 * 119.99788 * 0.26429 * 9 8 7 11 11 C 1.40050 * 119.99953 * 179.97438 * 9 8 7 12 12 N 1.30722 * 119.99840 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99827 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47155 * 90.00031 * 13 11 9 15 15 H 1.48498 * 109.47070 * 209.99953 * 13 11 9 16 16 H 1.48505 * 109.47134 * 329.99909 * 13 11 9 17 17 N 1.33611 * 121.64657 * 0.25212 * 8 7 6 18 18 C 1.31665 * 120.78154 * 359.48545 * 17 8 7 19 19 C 1.36699 * 119.39993 * 180.22562 * 3 2 1 20 20 C 1.40492 * 119.04369 * 359.49869 * 19 3 2 21 21 O 1.21910 * 120.20830 * 180.24465 * 20 19 3 22 22 N 1.34751 * 119.58784 * 0.50196 * 20 19 3 23 23 C 1.46507 * 119.71387 * 179.77948 * 22 20 19 24 24 C 1.34542 * 120.57705 * 359.75948 * 22 20 19 25 25 O 1.21581 * 119.50316 * 179.97438 * 24 22 20 26 26 H 1.09003 * 109.47083 * 94.80258 * 1 2 3 27 27 H 1.09009 * 109.47044 * 214.79779 * 1 2 3 28 28 H 1.08997 * 109.47345 * 334.79740 * 1 2 3 29 29 H 0.96998 * 120.00402 * 85.70301 * 4 3 2 30 30 H 1.08000 * 120.42546 * 359.95376 * 6 5 4 31 31 H 0.97002 * 119.99777 * 180.02562 * 12 11 9 32 32 H 1.08005 * 120.42368 * 180.27594 * 18 17 8 33 33 H 1.07999 * 120.47456 * 179.74793 * 19 3 2 34 34 H 1.09004 * 109.47247 * 269.97748 * 23 22 20 35 35 H 1.08996 * 109.47445 * 29.98286 * 23 22 20 36 36 H 1.09003 * 109.46928 * 149.98192 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.1926 0.0000 4 7 1.4638 2.3826 -0.0008 5 6 1.1965 3.0295 -1.2013 6 6 0.4066 4.1857 -1.2314 7 7 0.1739 4.7732 -2.3864 8 6 0.6814 4.2796 -3.5194 9 6 0.4099 4.9365 -4.7387 10 1 -0.1978 5.8292 -4.7474 11 6 0.9336 4.4342 -5.9366 12 7 1.6743 3.3572 -5.9252 13 14 0.5736 5.3033 -7.5504 14 1 1.6225 6.3223 -7.8085 15 1 0.5645 4.3114 -8.6555 16 1 -0.7524 5.9671 -7.4701 17 7 1.4351 3.1763 -3.5278 18 6 1.7121 2.5410 -2.4084 19 6 3.5150 1.1830 -0.0047 20 6 4.1885 -0.0500 0.0013 21 8 5.4071 -0.0833 0.0018 22 7 3.4790 -1.1956 0.0013 23 6 4.1785 -2.4829 0.0027 24 6 2.1339 -1.1676 0.0005 25 8 1.5133 -2.2131 0.0000 26 1 -0.3633 -0.0860 -1.0241 27 1 -0.3633 -0.8440 0.5865 28 1 -0.3634 0.9298 0.4376 29 1 1.1670 2.7720 0.8365 30 1 -0.0065 4.5898 -0.3191 31 1 2.0374 3.0095 -6.7548 32 1 2.3256 1.6522 -2.4213 33 1 4.0692 2.1099 -0.0089 34 1 4.3526 -2.8030 -1.0246 35 1 5.1336 -2.3769 0.5171 36 1 3.5696 -3.2267 0.5167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167772589.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:19:39 Heat of formation + Delta-G solvation = 19.283071 kcal Electronic energy + Delta-G solvation = -24446.903147 eV Core-core repulsion = 20739.276536 eV Total energy + Delta-G solvation = -3707.626611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.50659 -41.11224 -40.18947 -39.28330 -36.42867 -36.29735 -35.24205 -33.77347 -32.76479 -31.13716 -28.86251 -28.04143 -27.31688 -25.10757 -24.55499 -24.28937 -23.02195 -20.50316 -19.84580 -19.15057 -18.74647 -18.50124 -17.93433 -17.37325 -17.19417 -16.64389 -16.41210 -16.12219 -15.87630 -15.52911 -15.07172 -14.71731 -14.67700 -14.48100 -13.98352 -13.93754 -13.34767 -13.27667 -13.04103 -12.97013 -12.65321 -12.34945 -12.27686 -12.15765 -11.94343 -11.49593 -11.37713 -11.25627 -10.95941 -10.92608 -9.62727 -9.29915 -8.94975 -8.39971 -6.51587 -0.30136 0.62136 0.78835 0.85380 0.99722 1.43296 1.52104 1.58324 1.82428 2.22208 2.24186 2.38320 2.78005 3.43983 3.88581 3.91103 4.04492 4.06383 4.09565 4.21410 4.31523 4.34122 4.37338 4.41150 4.52949 4.57671 4.68899 4.72956 4.77804 5.08042 5.26682 5.34663 5.44768 6.03825 6.13386 6.20838 6.32860 6.48608 6.66706 6.69747 6.77585 7.20409 8.21714 8.40356 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.019785 B = 0.003954 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.883342 B = 7080.469108 C = 7499.237418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.538 5.538 3 C 0.466 3.534 4 N -0.671 5.671 5 C -0.044 4.044 6 C 0.135 3.865 7 N -0.589 5.589 8 C 0.349 3.651 9 C -0.441 4.441 10 H 0.090 0.910 11 C 0.026 3.974 12 N -0.755 5.755 13 Si 0.993 3.007 14 H -0.262 1.262 15 H -0.268 1.268 16 H -0.254 1.254 17 N -0.517 5.517 18 C 0.107 3.893 19 C -0.306 4.306 20 C 0.552 3.448 21 O -0.553 6.553 22 N -0.557 5.557 23 C 0.076 3.924 24 C 0.696 3.304 25 O -0.560 6.560 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.432 0.568 30 H 0.183 0.817 31 H 0.281 0.719 32 H 0.123 0.877 33 H 0.173 0.827 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 -6.107 11.652 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.261 5.261 3 C 0.266 3.734 4 N -0.313 5.313 5 C -0.146 4.146 6 C -0.040 4.040 7 N -0.308 5.308 8 C 0.109 3.891 9 C -0.477 4.477 10 H 0.108 0.892 11 C -0.197 4.197 12 N -0.378 5.378 13 Si 0.813 3.187 14 H -0.187 1.187 15 H -0.192 1.192 16 H -0.178 1.178 17 N -0.235 5.235 18 C -0.068 4.068 19 C -0.335 4.335 20 C 0.350 3.650 21 O -0.432 6.432 22 N -0.301 5.301 23 C -0.064 4.064 24 C 0.399 3.601 25 O -0.435 6.435 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.131 0.869 29 H 0.275 0.725 30 H 0.200 0.800 31 H 0.092 0.908 32 H 0.140 0.860 33 H 0.190 0.810 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.847 -6.550 10.495 12.400 hybrid contribution 0.197 -0.159 0.324 0.412 sum -0.650 -6.709 10.819 12.747 Atomic orbital electron populations 1.22104 0.73790 1.06206 1.04028 1.45976 1.10674 1.04106 1.65332 1.17491 0.88402 0.80465 0.86993 1.40187 1.65780 1.18340 1.06984 1.18786 1.08956 1.00433 0.86441 1.22966 0.93511 0.90569 0.96923 1.68651 1.28190 1.34906 0.99102 1.20129 0.88880 0.88141 0.91924 1.19541 1.28174 1.10279 0.89706 0.89166 1.26956 0.93100 0.95179 1.04423 1.70208 1.20635 1.17211 1.29758 0.85035 0.80053 0.78475 0.75129 1.18662 1.19206 1.17793 1.69266 1.17285 1.09850 1.27071 1.22824 0.96983 0.98684 0.88341 1.22058 0.91920 0.98896 1.20649 1.17057 0.87614 0.84131 0.76150 1.90882 1.13736 1.87555 1.51041 1.46397 1.05949 1.11503 1.66228 1.22068 0.98345 0.81396 1.04621 1.15772 0.81706 0.83965 0.78659 1.90979 1.66505 1.30312 1.55698 0.91882 0.88089 0.86927 0.72450 0.80049 0.90827 0.85983 0.80967 0.90349 0.88279 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.60 10.13 127.77 1.29 2.89 16 2 N -0.54 -13.26 3.03 -678.01 -2.05 -15.31 16 3 C 0.47 11.65 5.23 131.49 0.69 12.34 16 4 N -0.67 -15.55 4.03 -183.99 -0.74 -16.29 16 5 C -0.04 -1.49 6.68 38.89 0.26 -1.23 16 6 C 0.13 4.84 11.20 85.16 0.95 5.79 16 7 N -0.59 -27.82 10.34 -193.44 -2.00 -29.82 16 8 C 0.35 18.73 7.35 134.94 0.99 19.72 16 9 C -0.44 -23.65 9.35 23.42 0.22 -23.43 16 10 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 11 C 0.03 1.30 5.50 85.30 0.47 1.77 16 12 N -0.75 -39.82 11.41 21.84 0.25 -39.58 16 13 Si 0.99 37.31 29.56 68.60 2.03 39.34 16 14 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 15 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 16 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 17 N -0.52 -27.43 7.84 -193.44 -1.52 -28.94 16 18 C 0.11 4.67 10.54 85.16 0.90 5.56 16 19 C -0.31 -8.46 9.55 22.46 0.21 -8.24 16 20 C 0.55 16.73 7.41 84.79 0.63 17.36 16 21 O -0.55 -19.64 16.67 -5.02 -0.08 -19.72 16 22 N -0.56 -15.23 2.96 -807.62 -2.39 -17.62 16 23 C 0.08 1.65 10.11 127.77 1.29 2.94 16 24 C 0.70 19.37 8.12 179.19 1.45 20.83 16 25 O -0.56 -17.20 15.42 -3.97 -0.06 -17.26 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.10 1.81 7.53 -2.38 -0.02 1.79 16 28 H 0.11 1.76 7.19 -2.39 -0.02 1.74 16 29 H 0.43 6.74 8.85 -92.71 -0.82 5.92 16 30 H 0.18 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.28 13.42 8.29 -92.71 -0.77 12.65 16 32 H 0.12 5.17 6.88 -2.91 -0.02 5.15 16 33 H 0.17 4.72 8.06 -2.91 -0.02 4.69 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.10 2.01 7.41 -2.39 -0.02 2.00 16 36 H 0.10 1.94 7.37 -2.39 -0.02 1.92 16 Total: -1.00 -70.09 317.50 3.13 -66.96 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.33 Total: 21.95 kcal Atomic # 6 Polarization: 46.94 SS G_CDS: 9.36 Total: 56.30 kcal Atomic # 7 Polarization: -139.12 SS G_CDS: -8.45 Total: -147.57 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.14 Total: -36.98 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -70.09 3.13 -66.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167772589.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.243 kcal (2) G-P(sol) polarization free energy of solvation -70.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds