Wall clock time and date at job start Fri Apr 10 2020 14:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34822 * 116.99782 * 2 1 4 4 O 1.21548 * 120.00035 * 0.02562 * 3 2 1 5 5 C 1.47160 * 119.99977 * 179.97438 * 3 2 1 6 6 C 1.39487 * 120.50153 * 354.57303 * 5 3 2 7 7 C 1.37916 * 120.12296 * 179.97438 * 6 5 3 8 8 C 1.39260 * 121.21699 * 0.02562 * 7 6 5 9 9 N 1.40031 * 119.49132 * 179.97438 * 8 7 6 10 10 N 1.40602 * 127.39078 * 144.68078 * 9 8 7 11 11 N 1.28953 * 106.64662 * 179.89647 * 10 9 8 12 12 N 1.28416 * 110.21419 * 0.38337 * 11 10 9 13 13 C 1.30720 * 110.65415 * 359.75133 * 12 11 10 14 14 C 1.50703 * 126.36529 * 179.97438 * 13 12 11 15 15 N 1.46892 * 109.47144 * 269.99827 * 14 13 12 16 16 C 1.38212 * 121.02600 * 359.97438 * 8 7 6 17 17 C 1.40629 * 119.78395 * 0.02562 * 16 8 7 18 18 C 1.40906 * 120.57547 * 179.97438 * 17 16 8 19 19 H 1.07997 * 119.99617 * 145.24473 * 18 17 16 20 20 C 1.40271 * 119.99827 * 325.24373 * 18 17 16 21 21 N 1.30627 * 119.99555 * 168.78958 * 20 18 17 22 22 Si 1.86794 * 120.00404 * 348.78925 * 20 18 17 23 23 H 1.48503 * 109.46940 * 86.43890 * 22 20 18 24 24 H 1.48501 * 109.47579 * 206.43877 * 22 20 18 25 25 H 1.48504 * 109.46851 * 326.44195 * 22 20 18 26 26 H 1.09000 * 109.46771 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47447 * 299.99745 * 1 2 3 28 28 H 1.08996 * 109.47452 * 59.99827 * 1 2 3 29 29 H 1.08004 * 119.93416 * 0.28118 * 6 5 3 30 30 H 1.08000 * 119.39176 * 179.97438 * 7 6 5 31 31 H 1.09003 * 109.47143 * 30.00183 * 14 13 12 32 32 H 1.09005 * 109.46777 * 149.99760 * 14 13 12 33 33 H 1.00906 * 111.00013 * 56.04657 * 15 14 13 34 34 H 1.00903 * 111.00448 * 179.97438 * 15 14 13 35 35 H 1.08006 * 120.11074 * 180.02562 * 16 8 7 36 36 H 0.97001 * 119.99799 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0640 1.2013 0.0000 4 8 1.4019 2.2207 0.0005 5 6 3.5336 1.2784 0.0006 6 6 4.3032 0.1207 0.1148 7 6 5.6799 0.2019 0.1139 8 6 6.3305 1.4280 0.0008 9 7 7.7303 1.4685 0.0045 10 7 8.5611 2.3392 -0.7226 11 7 9.7757 2.0297 -0.4196 12 7 9.7900 1.0527 0.4137 13 6 8.5723 0.6755 0.7028 14 6 8.1804 -0.4375 1.6404 15 7 8.0809 -1.6968 0.8909 16 6 5.6162 2.6055 -0.1150 17 6 4.2103 2.5721 -0.1188 18 6 3.4654 3.7625 -0.2354 19 1 2.5303 3.7636 -0.7758 20 6 3.9384 4.9461 0.3503 21 7 3.3726 6.0880 0.0638 22 14 5.3774 4.8892 1.5399 23 1 6.6512 4.9604 0.7798 24 1 5.2934 6.0406 2.4740 25 1 5.3318 3.6213 2.3117 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 3.8200 -0.8416 0.1991 30 1 6.2643 -0.7020 0.2034 31 1 8.9348 -0.5376 2.4208 32 1 7.2164 -0.2076 2.0943 33 1 8.9433 -1.8991 0.4076 34 1 7.8196 -2.4593 1.4980 35 1 6.1360 3.5482 -0.2022 36 1 3.6999 6.9065 0.4685 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168924061.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:33 Heat of formation + Delta-G solvation = 41.310662 kcal Electronic energy + Delta-G solvation = -24541.139017 eV Core-core repulsion = 20834.467594 eV Total energy + Delta-G solvation = -3706.671423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.35686 -41.15341 -39.69582 -37.29948 -36.68808 -35.91255 -35.35447 -32.88188 -32.61133 -31.43571 -28.73131 -27.46324 -27.19158 -25.85208 -23.83545 -23.28624 -22.55873 -21.54073 -19.93014 -18.78189 -18.64199 -17.97430 -17.75551 -17.16032 -17.06048 -16.80664 -15.99786 -15.80973 -15.58667 -15.48882 -14.82928 -14.72715 -14.56094 -14.18141 -14.11091 -13.98367 -13.55367 -13.26114 -13.22804 -12.95185 -12.93591 -12.79872 -12.44986 -12.19654 -12.03235 -11.71550 -11.57534 -11.54114 -11.30134 -10.96399 -9.84705 -9.80676 -9.58877 -9.13475 -6.76451 -0.74095 0.21704 0.57389 0.73558 1.02273 1.11118 1.19194 1.26325 1.75850 1.87712 2.03438 2.41412 2.76070 3.13333 3.36296 3.63580 3.75357 3.96502 4.12541 4.25434 4.37388 4.40869 4.43075 4.45017 4.46838 4.53904 4.64630 4.76427 4.80231 5.03878 5.24881 5.45289 5.48169 5.55261 5.60730 5.93973 5.99666 6.15544 6.35872 6.48749 6.55362 7.16576 7.20513 7.89933 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.006475 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.703708 B = 4322.955689 C = 6118.266085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.504 3.496 4 O -0.541 6.541 5 C -0.249 4.249 6 C 0.020 3.980 7 C -0.233 4.233 8 C 0.178 3.822 9 N -0.313 5.313 10 N -0.112 5.112 11 N -0.060 5.060 12 N -0.343 5.343 13 C 0.259 3.741 14 C 0.138 3.862 15 N -0.840 5.840 16 C -0.235 4.235 17 C 0.117 3.883 18 C -0.414 4.414 19 H 0.086 0.914 20 C 0.051 3.949 21 N -0.809 5.809 22 Si 0.951 3.049 23 H -0.268 1.268 24 H -0.264 1.264 25 H -0.243 1.243 26 H 0.139 0.861 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.166 0.834 30 H 0.179 0.821 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.355 0.645 34 H 0.379 0.621 35 H 0.108 0.892 36 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.348 -16.412 6.433 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.280 6.280 3 C 0.354 3.646 4 O -0.433 6.433 5 C -0.252 4.252 6 C 0.001 3.999 7 C -0.254 4.254 8 C 0.086 3.914 9 N -0.104 5.104 10 N -0.097 5.097 11 N -0.054 5.054 12 N -0.195 5.195 13 C -0.018 4.018 14 C 0.005 3.995 15 N -0.377 5.377 16 C -0.256 4.256 17 C 0.112 3.888 18 C -0.441 4.441 19 H 0.103 0.897 20 C -0.169 4.169 21 N -0.432 5.432 22 Si 0.774 3.226 23 H -0.195 1.195 24 H -0.189 1.189 25 H -0.166 1.166 26 H 0.157 0.843 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.183 0.817 30 H 0.196 0.804 31 H 0.122 0.878 32 H 0.134 0.866 33 H 0.169 0.831 34 H 0.197 0.803 35 H 0.126 0.874 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.458 -14.650 5.376 15.984 hybrid contribution 0.061 0.622 0.769 0.990 sum 3.519 -14.029 6.144 15.714 Atomic orbital electron populations 1.23429 0.75548 1.05374 1.01747 1.86516 1.24252 1.32066 1.85179 1.21159 0.89408 0.81081 0.72987 1.90826 1.67517 1.36819 1.48133 1.20086 0.88357 0.94758 1.22028 1.21206 0.92083 0.97196 0.89411 1.21062 0.94807 0.95416 1.14154 1.17720 0.75281 0.96099 1.02256 1.49045 1.07849 1.23754 1.29715 1.82745 0.95829 1.14602 1.16528 1.77946 1.12369 1.07299 1.07828 1.74293 1.19517 1.10748 1.14987 1.26603 0.84981 0.95485 0.94737 1.20579 1.04445 0.84235 0.90254 1.58472 1.40908 1.03921 1.34403 1.20914 0.93683 0.96505 1.14483 1.18339 0.89993 0.92244 0.88197 1.19916 1.06562 0.91247 1.26331 0.89653 1.26929 0.98675 0.93921 0.97412 1.69545 1.38077 1.00250 1.35343 0.85740 0.77773 0.80186 0.78906 1.19464 1.18916 1.16627 0.84314 0.92776 0.93125 0.81689 0.80412 0.87835 0.86578 0.83143 0.80269 0.87440 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.57 113.37 1.20 2.01 16 2 O -0.36 -11.97 9.85 -57.34 -0.56 -12.53 16 3 C 0.50 21.44 7.86 70.16 0.55 22.00 16 4 O -0.54 -27.27 13.60 19.68 0.27 -27.00 16 5 C -0.25 -10.51 6.07 -18.48 -0.11 -10.63 16 6 C 0.02 0.64 9.61 22.49 0.22 0.86 16 7 C -0.23 -7.33 8.34 22.44 0.19 -7.14 16 8 C 0.18 6.85 6.33 38.07 0.24 7.09 16 9 N -0.31 -11.62 3.76 -179.40 -0.67 -12.30 16 10 N -0.11 -4.69 13.73 37.02 0.51 -4.18 16 11 N -0.06 -2.32 13.39 37.02 0.50 -1.83 16 12 N -0.34 -11.37 12.15 -50.27 -0.61 -11.98 16 13 C 0.26 7.63 7.47 138.04 1.03 8.67 16 14 C 0.14 2.41 6.16 85.56 0.53 2.94 16 15 N -0.84 -10.80 7.90 -190.01 -1.50 -12.30 16 16 C -0.23 -10.69 6.93 22.85 0.16 -10.53 16 17 C 0.12 5.69 5.21 -19.89 -0.10 5.59 16 18 C -0.41 -22.70 8.32 23.42 0.19 -22.51 16 19 H 0.09 5.24 6.28 -2.91 -0.02 5.22 16 20 C 0.05 2.66 5.47 85.37 0.47 3.12 16 21 N -0.81 -43.20 13.92 21.88 0.30 -42.90 16 22 Si 0.95 42.13 24.55 68.60 1.68 43.81 16 23 H -0.27 -12.14 6.42 99.48 0.64 -11.50 16 24 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.24 -10.51 7.01 99.48 0.70 -9.82 16 26 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.17 4.08 7.63 -2.91 -0.02 4.05 16 30 H 0.18 4.41 5.01 -2.91 -0.01 4.40 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.12 1.98 7.02 -2.38 -0.02 1.97 16 33 H 0.35 4.45 8.99 -89.69 -0.81 3.64 16 34 H 0.38 2.30 9.08 -89.69 -0.81 1.48 16 35 H 0.11 5.25 4.68 -2.91 -0.01 5.23 16 36 H 0.30 14.42 8.29 -92.71 -0.77 13.65 16 Total: -1.00 -69.36 311.23 3.96 -65.41 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -0.51 Total: 14.34 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 4.56 Total: 1.46 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -1.48 Total: -85.49 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.30 Total: -39.53 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.68 Total: 43.81 kcal Total: -69.36 3.96 -65.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168924061.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.719 kcal (2) G-P(sol) polarization free energy of solvation -69.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds