Wall clock time and date at job start Fri Apr 10 2020 14:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35989 * 126.35582 * 2 1 4 4 N 1.30288 * 110.05797 * 180.02562 * 3 2 1 5 5 C 1.34652 * 109.66501 * 0.02562 * 4 3 2 6 6 C 1.37944 * 126.36154 * 180.02562 * 2 1 3 7 7 N 1.32115 * 133.80241 * 359.97438 * 6 2 1 8 8 C 1.31728 * 121.94540 * 179.97438 * 7 6 2 9 9 C 1.38345 * 121.54520 * 0.02562 * 8 7 6 10 10 C 1.39631 * 119.37721 * 359.97438 * 9 8 7 11 11 C 1.47760 * 121.07315 * 179.97438 * 10 9 8 12 12 O 1.21568 * 120.00247 * 180.02562 * 11 10 9 13 13 N 1.34772 * 120.00134 * 0.02562 * 11 10 9 14 14 C 1.46509 * 119.99974 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46596 * 180.02562 * 14 13 11 16 16 O 1.21283 * 120.00579 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99522 * 180.02562 * 15 14 13 18 18 C 1.37103 * 120.00095 * 179.97438 * 17 15 14 19 19 H 1.07995 * 119.99374 * 0.02562 * 18 17 15 20 20 C 1.38940 * 119.99980 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00416 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46991 * 89.99480 * 22 20 18 24 24 H 1.48494 * 109.46998 * 209.99665 * 22 20 18 25 25 H 1.48501 * 109.46694 * 329.99828 * 22 20 18 26 26 H 1.08996 * 109.46806 * 269.97320 * 1 2 3 27 27 H 1.09003 * 109.46932 * 29.97150 * 1 2 3 28 28 H 1.09002 * 109.46922 * 149.97176 * 1 2 3 29 29 H 1.08002 * 124.97152 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.22990 * 180.27326 * 8 7 6 31 31 H 1.08005 * 120.30787 * 180.02562 * 9 8 7 32 32 H 0.97002 * 120.00109 * 359.97438 * 13 11 10 33 33 H 1.08998 * 109.47292 * 299.99605 * 14 13 11 34 34 H 1.08997 * 109.46861 * 60.00445 * 14 13 11 35 35 H 0.97004 * 120.00163 * 0.02562 * 17 15 14 36 36 H 0.96997 * 120.00145 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0952 0.0000 4 7 3.5217 0.7296 -0.0005 5 6 3.6008 -0.6146 -0.0015 6 6 2.2828 -1.1108 -0.0005 7 7 2.0572 -2.4126 -0.0007 8 6 3.0394 -3.2903 -0.0017 9 6 4.3647 -2.8933 -0.0021 10 6 4.6718 -1.5312 -0.0020 11 6 6.0741 -1.0656 -0.0019 12 8 6.3192 0.1252 -0.0013 13 7 7.0815 -1.9609 -0.0024 14 6 8.4719 -1.4991 -0.0028 15 6 9.3963 -2.6893 -0.0040 16 8 8.9389 -3.8126 -0.0040 17 7 10.7315 -2.5054 -0.0041 18 6 11.5726 -3.5881 -0.0046 19 1 11.1652 -4.5883 -0.0054 20 6 12.9490 -3.3985 -0.0041 21 7 13.4447 -2.1815 -0.0037 22 14 14.0951 -4.8737 -0.0056 23 1 14.3989 -5.2631 -1.4061 24 1 15.3561 -4.5215 0.6950 25 1 13.4411 -6.0092 0.6931 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3633 -0.8898 -0.5143 29 1 1.9254 2.1184 0.0004 30 1 2.8047 -4.3445 -0.0062 31 1 5.1544 -3.6302 -0.0033 32 1 6.8859 -2.9110 -0.0025 33 1 8.6545 -0.8969 -0.8928 34 1 8.6551 -0.8972 0.8872 35 1 11.0974 -1.6070 -0.0030 36 1 14.4057 -2.0492 -0.0037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329571178.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:19:56 Heat of formation + Delta-G solvation = 0.966566 kcal Electronic energy + Delta-G solvation = -23147.394829 eV Core-core repulsion = 19438.973955 eV Total energy + Delta-G solvation = -3708.420874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.46783 -41.07399 -39.96680 -39.15859 -36.27442 -35.50960 -35.38753 -33.43055 -33.10504 -30.82991 -29.40305 -28.04865 -26.72182 -25.44018 -24.00716 -22.99000 -21.44230 -21.11849 -20.07204 -19.21853 -18.52808 -18.48509 -17.42736 -17.23687 -16.87519 -16.70611 -16.55920 -16.01986 -15.64631 -15.60607 -15.48830 -14.90110 -14.78107 -14.44736 -14.08422 -13.67310 -13.61139 -13.53872 -13.45180 -13.36722 -12.90037 -12.44698 -12.11729 -11.88203 -11.77598 -11.56246 -11.38074 -10.56997 -10.29909 -10.27457 -10.09008 -9.78923 -9.60894 -8.50258 -6.00620 -0.73479 0.06924 1.34340 1.37241 1.43773 1.56495 1.63909 1.85804 1.85955 1.91589 2.30884 2.77569 3.01695 3.12137 3.16895 3.30974 3.49768 3.61217 3.90026 4.06482 4.16591 4.22639 4.36876 4.40362 4.45260 4.46199 4.73614 4.76692 4.84901 5.05757 5.17586 5.39244 5.50060 5.91933 5.94814 6.40005 6.48747 6.70181 6.74705 7.03204 7.05941 7.44023 7.93487 8.66693 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.040154 B = 0.002576 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.141459 B =10866.035598 C =11542.730722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.481 5.481 3 C 0.290 3.710 4 N -0.526 5.526 5 C 0.024 3.976 6 C 0.214 3.786 7 N -0.469 5.469 8 C 0.136 3.864 9 C -0.133 4.133 10 C -0.066 4.066 11 C 0.553 3.447 12 O -0.550 6.550 13 N -0.698 5.698 14 C 0.121 3.879 15 C 0.435 3.565 16 O -0.620 6.620 17 N -0.559 5.559 18 C -0.336 4.336 19 H 0.089 0.911 20 C -0.012 4.012 21 N -0.917 5.917 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.273 1.273 25 H -0.268 1.268 26 H 0.089 0.911 27 H 0.126 0.874 28 H 0.085 0.915 29 H 0.273 0.727 30 H 0.216 0.784 31 H 0.170 0.830 32 H 0.415 0.585 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.399 0.601 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.085 3.492 -0.085 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.173 5.173 3 C 0.005 3.995 4 N -0.245 5.245 5 C -0.100 4.100 6 C -0.022 4.022 7 N -0.182 5.182 8 C -0.031 4.031 9 C -0.156 4.156 10 C -0.078 4.078 11 C 0.340 3.660 12 O -0.428 6.428 13 N -0.353 5.353 14 C -0.006 4.006 15 C 0.222 3.778 16 O -0.508 6.508 17 N -0.195 5.195 18 C -0.465 4.465 19 H 0.107 0.893 20 C -0.213 4.213 21 N -0.557 5.557 22 Si 0.821 3.179 23 H -0.195 1.195 24 H -0.198 1.198 25 H -0.193 1.193 26 H 0.107 0.893 27 H 0.144 0.856 28 H 0.104 0.896 29 H 0.289 0.711 30 H 0.233 0.767 31 H 0.187 0.813 32 H 0.255 0.745 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.233 0.767 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.326 3.998 -0.080 26.628 hybrid contribution 1.259 -0.565 0.013 1.380 sum -25.067 3.433 -0.067 25.301 Atomic orbital electron populations 1.22381 0.72269 1.06552 1.05105 1.45474 1.09279 1.03360 1.59188 1.26685 0.83590 0.94945 0.94244 1.70301 1.20452 1.10946 1.22752 1.19498 0.93044 0.91933 1.05510 1.19195 0.88853 0.88972 1.05212 1.66311 1.38565 0.99232 1.14135 1.23218 0.86042 1.00066 0.93726 1.22579 1.00451 0.93600 0.98953 1.19636 0.90918 0.93759 1.03537 1.18309 0.85212 0.85612 0.76891 1.90800 1.85035 1.17010 1.49981 1.45539 1.04481 1.11130 1.74193 1.20811 0.80753 0.94675 1.04377 1.20286 0.83473 0.90354 0.83684 1.90458 1.76251 1.26128 1.57979 1.41850 1.04410 1.09828 1.63365 1.19758 0.87884 0.88570 1.50286 0.89323 1.26159 0.98534 1.00788 0.95797 1.69686 1.14706 1.22008 1.49317 0.84849 0.77030 0.77285 0.78711 1.19547 1.19772 1.19281 0.89278 0.85571 0.89610 0.71139 0.76726 0.81288 0.74522 0.88708 0.88706 0.76729 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.48 11.20 127.77 1.43 1.91 16 2 N -0.48 -8.18 3.20 -549.31 -1.76 -9.93 16 3 C 0.29 5.15 12.50 180.02 2.25 7.40 16 4 N -0.53 -16.01 10.63 -191.50 -2.04 -18.04 16 5 C 0.02 0.75 6.85 40.01 0.27 1.02 16 6 C 0.21 5.34 8.02 133.92 1.07 6.41 16 7 N -0.47 -10.54 10.35 -192.83 -2.00 -12.54 16 8 C 0.14 2.51 11.14 84.73 0.94 3.46 16 9 C -0.13 -3.01 9.60 22.63 0.22 -2.79 16 10 C -0.07 -2.04 5.93 -19.75 -0.12 -2.16 16 11 C 0.55 20.26 7.79 86.76 0.68 20.94 16 12 O -0.55 -23.94 16.19 -3.93 -0.06 -24.01 16 13 N -0.70 -24.52 5.49 -469.77 -2.58 -27.10 16 14 C 0.12 4.63 6.15 85.63 0.53 5.16 16 15 C 0.44 20.20 7.85 87.66 0.69 20.89 16 16 O -0.62 -31.61 15.24 -3.04 -0.05 -31.66 16 17 N -0.56 -28.27 5.29 -306.99 -1.62 -29.89 16 18 C -0.34 -18.48 9.68 84.04 0.81 -17.66 16 19 H 0.09 5.09 7.16 -2.91 -0.02 5.07 16 20 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 21 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 22 Si 1.00 41.75 29.55 68.60 2.03 43.78 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.27 1.41 8.06 -2.91 -0.02 1.39 16 30 H 0.22 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.17 3.13 6.53 -2.91 -0.02 3.11 16 32 H 0.41 13.59 5.58 -92.71 -0.52 13.07 16 33 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 35 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 36 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -81.66 324.82 1.37 -80.29 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -0.08 Total: 33.48 kcal Atomic # 6 Polarization: 35.16 SS G_CDS: 9.24 Total: 44.41 kcal Atomic # 7 Polarization: -136.59 SS G_CDS: -9.71 Total: -146.29 kcal Atomic # 8 Polarization: -55.55 SS G_CDS: -0.11 Total: -55.66 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -81.66 1.37 -80.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329571178.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.257 kcal (2) G-P(sol) polarization free energy of solvation -81.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds