Wall clock time and date at job start Fri Apr 10 2020 14:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 N 1.40017 * 126.25740 * 2 1 4 4 N 1.23649 * 109.31537 * 180.02562 * 3 2 1 5 5 N 1.40027 * 109.31837 * 359.97438 * 4 3 2 6 6 C 1.46495 * 126.26119 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47433 * 270.03177 * 6 5 4 8 8 O 1.21283 * 119.99894 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00096 * 179.97438 * 7 6 5 10 10 C 1.39238 * 120.00039 * 176.69537 * 9 7 6 11 11 C 1.39477 * 119.83502 * 217.48954 * 10 9 7 12 12 C 1.36377 * 120.16839 * 179.71423 * 11 10 9 13 13 C 1.40865 * 119.82705 * 0.58471 * 12 11 10 14 14 C 1.41159 * 120.16666 * 179.67065 * 13 12 11 15 15 H 1.07995 * 120.00248 * 157.95936 * 14 13 12 16 16 C 1.39911 * 119.99486 * 337.96635 * 14 13 12 17 17 N 1.30865 * 119.99893 * 327.59654 * 16 14 13 18 18 Si 1.86800 * 119.99562 * 147.60174 * 16 14 13 19 19 H 1.48499 * 109.47148 * 94.98454 * 18 16 14 20 20 H 1.48501 * 109.46712 * 214.98371 * 18 16 14 21 21 H 1.48496 * 109.47052 * 334.98170 * 18 16 14 22 22 C 1.40867 * 119.67432 * 359.69173 * 13 12 11 23 23 C 1.36378 * 119.82779 * 0.02562 * 22 13 12 24 24 C 1.35047 * 126.25800 * 180.02562 * 2 1 3 25 25 O 1.21825 * 126.80052 * 359.97438 * 24 2 1 26 26 H 1.08997 * 109.46673 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.46828 * 119.97424 * 1 2 3 28 28 H 1.08994 * 109.46741 * 239.97527 * 1 2 3 29 29 H 1.09004 * 109.47060 * 30.03238 * 6 5 4 30 30 H 1.08993 * 109.47324 * 150.02955 * 6 5 4 31 31 H 0.97000 * 120.00007 * 356.70338 * 9 7 6 32 32 H 1.07998 * 119.91386 * 0.02562 * 11 10 9 33 33 H 1.08002 * 120.08745 * 180.25101 * 12 11 10 34 34 H 0.97006 * 120.00091 * 180.02562 * 17 16 14 35 35 H 1.08003 * 120.09220 * 179.97438 * 22 13 12 36 36 H 1.08000 * 119.91646 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2932 1.1291 0.0000 4 7 3.4760 0.7687 -0.0005 5 7 3.5341 -0.6303 -0.0003 6 6 4.7502 -1.4471 -0.0013 7 6 5.1664 -1.7268 -1.4224 8 8 4.5113 -1.2875 -2.3438 9 7 6.2666 -2.4651 -1.6695 10 6 6.6127 -2.7814 -2.9806 11 6 7.1491 -4.0352 -3.2734 12 6 7.4851 -4.3543 -4.5560 13 6 7.3005 -3.4095 -5.5844 14 6 7.6523 -3.7298 -6.9134 15 1 7.2063 -3.1894 -7.7353 16 6 8.5786 -4.7475 -7.1659 17 7 9.5537 -4.9689 -6.3217 18 14 8.4234 -5.7899 -8.7082 19 1 9.2861 -5.2247 -9.7766 20 1 8.8510 -7.1806 -8.4106 21 1 7.0099 -5.7933 -9.1632 22 6 6.7636 -2.1433 -5.2800 23 6 6.4269 -1.8407 -3.9935 24 6 2.2638 -1.0890 -0.0005 25 8 1.9088 -2.2543 -0.0006 26 1 -0.3632 1.0277 0.0005 27 1 -0.3633 -0.5134 -0.8902 28 1 -0.3632 -0.5142 0.8897 29 1 5.5483 -0.9109 0.5122 30 1 4.5560 -2.3886 0.5124 31 1 6.8172 -2.7761 -0.9341 32 1 7.2941 -4.7568 -2.4831 33 1 7.8966 -5.3270 -4.7819 34 1 10.1962 -5.6742 -6.4969 35 1 6.6196 -1.4136 -6.0632 36 1 6.0148 -0.8704 -3.7586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413922931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:23 Heat of formation + Delta-G solvation = 53.384668 kcal Electronic energy + Delta-G solvation = -23497.313245 eV Core-core repulsion = 19791.165390 eV Total energy + Delta-G solvation = -3706.147855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.97854 -41.22649 -39.31130 -39.09198 -36.51493 -36.11758 -34.88653 -34.40677 -31.55317 -31.26867 -29.86961 -28.48713 -26.69927 -24.62525 -23.64616 -23.33108 -22.60233 -21.46165 -19.39421 -19.22189 -18.82779 -18.06115 -17.68041 -17.50465 -17.31572 -16.99037 -16.35637 -15.79403 -15.41135 -15.12586 -14.77918 -14.67861 -14.46768 -14.36723 -14.13546 -14.01502 -13.84039 -13.63783 -13.52051 -13.18358 -12.86337 -12.71191 -12.36708 -12.02916 -11.81636 -11.76175 -11.62012 -11.16627 -10.85034 -10.55994 -10.37190 -9.50675 -9.05171 -8.75898 -6.26446 -0.06950 0.10539 0.77734 1.10393 1.11612 1.34725 1.39881 1.52290 1.66956 1.76094 2.18313 2.30313 2.61633 2.91086 3.62034 3.70047 3.77753 4.09121 4.29028 4.36713 4.38701 4.41721 4.45217 4.63665 4.69603 4.84427 4.87860 5.07886 5.12777 5.24269 5.40175 5.61205 5.83572 5.98709 6.05152 6.32575 6.41497 6.57702 6.59833 6.65419 6.86321 6.95636 7.31517 8.17888 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.032005 B = 0.002807 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.640031 B = 9972.418599 C =10169.813873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.469 5.469 3 N 0.024 4.976 4 N 0.025 4.975 5 N -0.455 5.455 6 C 0.141 3.859 7 C 0.479 3.521 8 O -0.575 6.575 9 N -0.630 5.630 10 C -0.010 4.010 11 C -0.096 4.096 12 C -0.191 4.191 13 C 0.085 3.915 14 C -0.505 4.505 15 H 0.073 0.927 16 C 0.053 3.947 17 N -0.795 5.795 18 Si 0.971 3.029 19 H -0.259 1.259 20 H -0.259 1.259 21 H -0.264 1.264 22 C -0.249 4.249 23 C -0.075 4.075 24 C 0.639 3.361 25 O -0.558 6.558 26 H 0.130 0.870 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.181 0.819 30 H 0.162 0.838 31 H 0.423 0.577 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.295 0.705 35 H 0.088 0.912 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.171 5.486 16.172 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.300 5.300 3 N 0.026 4.974 4 N 0.027 4.973 5 N -0.284 5.284 6 C 0.017 3.983 7 C 0.265 3.735 8 O -0.454 6.454 9 N -0.276 5.276 10 C -0.104 4.104 11 C -0.116 4.116 12 C -0.211 4.211 13 C 0.082 3.918 14 C -0.533 4.533 15 H 0.091 0.909 16 C -0.167 4.167 17 N -0.418 5.418 18 Si 0.791 3.209 19 H -0.183 1.183 20 H -0.183 1.183 21 H -0.188 1.188 22 C -0.269 4.269 23 C -0.095 4.095 24 C 0.336 3.664 25 O -0.430 6.430 26 H 0.149 0.851 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.198 0.802 30 H 0.179 0.821 31 H 0.262 0.738 32 H 0.146 0.854 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.377 5.923 15.639 19.173 hybrid contribution 0.145 -1.152 -0.856 1.443 sum -9.232 4.771 14.783 18.070 Atomic orbital electron populations 1.22288 0.68397 1.07270 1.04889 1.50348 1.09641 1.02075 1.67922 1.79555 0.95301 1.11266 1.11245 1.79609 1.13450 0.92949 1.11250 1.49694 1.07644 1.03254 1.67805 1.21799 0.85067 0.98162 0.93314 1.21592 0.80357 0.78967 0.92552 1.90729 1.54874 1.52160 1.47644 1.42642 1.25620 1.52409 1.06949 1.17056 1.13471 0.95221 0.84616 1.20467 1.00278 0.94205 0.96599 1.20672 1.08188 0.99305 0.92920 1.17911 0.89329 0.90629 0.93929 1.19713 1.22589 1.17754 0.93205 0.90885 1.26709 0.91897 0.96638 1.01453 1.69926 1.08063 1.26042 1.37806 0.85378 0.79882 0.77944 0.77694 1.18330 1.18303 1.18751 1.20708 1.13089 0.97253 0.95821 1.20385 0.98422 0.97649 0.93009 1.17090 0.82624 0.85805 0.80872 1.91124 1.78477 1.14983 1.58381 0.85129 0.89898 0.88079 0.80184 0.82089 0.73834 0.85368 0.88228 0.89357 0.89342 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.39 11.42 127.77 1.46 2.85 16 2 N -0.47 -10.67 4.02 -499.30 -2.01 -12.68 16 3 N 0.02 0.56 13.55 37.02 0.50 1.06 16 4 N 0.03 0.62 13.55 37.02 0.50 1.13 16 5 N -0.45 -11.65 3.11 -481.43 -1.50 -13.15 16 6 C 0.14 2.73 6.87 85.63 0.59 3.32 16 7 C 0.48 15.13 7.71 87.66 0.68 15.81 16 8 O -0.58 -24.92 14.05 -3.04 -0.04 -24.96 16 9 N -0.63 -19.41 5.30 -303.11 -1.61 -21.02 16 10 C -0.01 -0.45 6.25 38.56 0.24 -0.21 16 11 C -0.10 -4.21 9.90 22.13 0.22 -3.99 16 12 C -0.19 -9.85 8.74 22.48 0.20 -9.65 16 13 C 0.08 4.71 5.57 -21.28 -0.12 4.59 16 14 C -0.51 -27.81 8.94 23.39 0.21 -27.60 16 15 H 0.07 3.97 8.02 -2.91 -0.02 3.95 16 16 C 0.05 2.64 4.77 85.24 0.41 3.05 16 17 N -0.80 -40.16 11.78 21.82 0.26 -39.90 16 18 Si 0.97 37.49 29.66 68.60 2.03 39.52 16 19 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 20 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 C -0.25 -13.34 9.74 22.48 0.22 -13.12 16 23 C -0.07 -3.68 8.59 22.14 0.19 -3.49 16 24 C 0.64 18.36 8.77 178.88 1.57 19.93 16 25 O -0.56 -19.15 17.83 -4.75 -0.08 -19.23 16 26 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.18 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.16 2.25 8.12 -2.39 -0.02 2.23 16 31 H 0.42 8.60 8.82 -92.71 -0.82 7.78 16 32 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.10 5.21 6.52 -2.91 -0.02 5.19 16 34 H 0.30 13.18 8.30 -92.70 -0.77 12.41 16 35 H 0.09 4.65 8.06 -2.91 -0.02 4.62 16 36 H 0.10 4.84 6.45 -2.91 -0.02 4.82 16 Total: -1.00 -78.94 326.34 4.24 -74.70 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.33 Total: 23.04 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 5.85 Total: -8.51 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -3.85 Total: -84.56 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.13 Total: -44.19 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Total: -78.94 4.24 -74.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413922931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.089 kcal (2) G-P(sol) polarization free energy of solvation -78.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds